mRNA_H-paniculata_contig31396.8481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31396.8481.1
Unique NamemRNA_H-paniculata_contig31396.8481.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: D8LLP6_ECTSI (Glutamine cyclotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP6_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 5.200e-37
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 QVMTEDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            +V  +DGR L K+NELE +KGYVFANVWFDD+LYKIDPATG+VVD YNF ELYP  L+K+EL SREA LNGIAWDP EDV+YLTG+
Sbjct:  318 EVKLKDGRPLKKLNELEVVKGYVFANVWFDDNLYKIDPATGEVVDAYNFSELYPKALQKKELTSREAVLNGIAWDPEEDVLYLTGK 403          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: A0A835Z6R5_9STRA (Glutamine cyclotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.460e-21
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    7 MTEDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            +T  G+ + ++NELE++KG V ANVWF D +  IDP +G+VV+  +F  LYP   R  EL S EA LNGIA+D  EDV+YLTG+
Sbjct:  216 VTLRGQPVARLNELEYVKGRVLANVWFSDEILAIDPLSGRVVEVLDFAALYPRAQRAHELTSHEAVLNGIAYDAQEDVLYLTGK 299          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: A0A835Z8N0_9STRA (Glutamine cyclotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.850e-18
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   19 GRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            GR +  ++ELEF  G+V AN+W  D + +IDP TG+V+   +F  +YP  +R  EL S +A LNGIA+DP EDV+Y+TG+
Sbjct:  169 GRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGK 248          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: A0A2G9XLR4_9DELT (Glutamine cyclotransferase n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2G9XLR4_9DELT)

HSP 1 Score: 80.9 bits (198), Expect = 2.230e-16
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   34 KINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            KINELEF+KGY++AN+W+ DH+ KI P TG+VV  Y+   L    ++K +L   EA LNGIA+D  +D +++TG+
Sbjct:  191 KINELEFVKGYIYANIWYTDHIVKISPETGRVVARYDLSGL----VQKNQLEDPEAVLNGIAYDEKKDRLFVTGK 261          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: A0A1H7QL08_9SPHI (Glutamine cyclotransferase n=1 Tax=Olivibacter domesticus TaxID=407022 RepID=A0A1H7QL08_9SPHI)

HSP 1 Score: 79.0 bits (193), Expect = 9.000e-16
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 MTEDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNF---VELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            +  +G  + K+NELEFI G+++AN W+DD +YKIDP TG ++   +F   +E + P  +K E    E  LNGIAW+    ++Y+TG+
Sbjct:  180 VNRNGEEMDKLNELEFIDGFIYANRWYDDKIYKIDPKTGNIIGEMHFEGLLEHFSPRFQKNE----EDVLNGIAWNEKAKLMYVTGK 262          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: A0A1P8WRL4_9PLAN (Glutamine cyclotransferase n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WRL4_9PLAN)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-15
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    7 MTEDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            +T+  R++ K+NELEF+ G +FANVW+ D + +IDP TG+V+    ++EL P  LR + L SREA LNGIAWD     +++TG+
Sbjct:  170 VTDGRRAVSKLNELEFVNGEIFANVWYSDRIARIDPETGRVI---GWLELKP--LRPRGL-SREAALNGIAWDAASKRLFVTGK 247          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: A0A539D1Q5_9BACT (Glutamine cyclotransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A539D1Q5_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.540e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 MTEDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            +T DGR + +INELE+I+G VFANVW  D++ +I+PATG +    +  EL P    +  L   +A LNGIAWDP+   +++TG+
Sbjct:  169 VTLDGRPVRQINELEWIEGEVFANVWQTDYILRINPATGAITGIIDLTELMPD---RSGLDPTDAVLNGIAWDPVGRRLFVTGK 249          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: UPI000785CBD7 (glutaminyl-peptide cyclotransferase n=1 Tax=Cellvibrio sp. OA-2007 TaxID=529823 RepID=UPI000785CBD7)

HSP 1 Score: 77.8 bits (190), Expect = 2.150e-15
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 MTEDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            +++ GR + ++NELEF  G+++AN+W+ D + KIDPATG V+   +  EL     +K EL++ E  LNGIAWD  +   ++TG+
Sbjct:  172 VSDAGRPISQLNELEFAGGFIWANIWYQDRIIKIDPATGDVMGEMDLSELK----QKLELNNSEQVLNGIAWDEKQQAFWITGK 251          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: UPI001303FDC3 (glutaminyl-peptide cyclotransferase n=1 Tax=Agaribacterium haliotis TaxID=2013869 RepID=UPI001303FDC3)

HSP 1 Score: 76.6 bits (187), Expect = 5.200e-15
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   19 GRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            G++L  INELE++ GY++ANVW D H+Y+ID    + ++ ++   L P     Q+ H+REA LNGIAWD      +LTG+
Sbjct:  166 GKALPNINELEWVNGYLWANVWHDPHIYQIDVERAEAIERWDMSALTPA----QQSHNREAVLNGIAWDKQRRAFWLTGK 241          
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Match: A0A4Q5U8K5_9BACT (Glutaminyl-peptide cyclotransferase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q5U8K5_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 5.360e-15
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   13 EDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVELYPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE 258
            + G  L K+NELE++KGY++ANVW +D++ K+DP TG VV   +   L    L  + L+     LNGIA+D  +D VY+TG+
Sbjct:  193 DKGSPLDKLNELEYVKGYIYANVWEEDYIVKVDPVTGAVVGRIDLTSLV---LEAKSLNPAADVLNGIAYDESKDQVYITGK 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31396.8481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP6_ECTSI5.200e-3774.42Glutamine cyclotransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z6R5_9STRA4.460e-2152.38Glutamine cyclotransferase n=1 Tax=Tribonema minus... [more]
A0A835Z8N0_9STRA1.850e-1848.75Glutamine cyclotransferase n=1 Tax=Tribonema minus... [more]
A0A2G9XLR4_9DELT2.230e-1649.33Glutamine cyclotransferase n=2 Tax=Deltaproteobact... [more]
A0A1H7QL08_9SPHI9.000e-1641.38Glutamine cyclotransferase n=1 Tax=Olivibacter dom... [more]
A0A1P8WRL4_9PLAN1.010e-1547.62Glutamine cyclotransferase n=2 Tax=Fuerstiella mar... [more]
A0A539D1Q5_9BACT1.540e-1545.24Glutamine cyclotransferase n=1 Tax=bacterium TaxID... [more]
UPI000785CBD72.150e-1541.67glutaminyl-peptide cyclotransferase n=1 Tax=Cellvi... [more]
UPI001303FDC35.200e-1543.75glutaminyl-peptide cyclotransferase n=1 Tax=Agarib... [more]
A0A4Q5U8K5_9BACT5.360e-1543.90Glutaminyl-peptide cyclotransferase n=1 Tax=Chitin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31396contigH-paniculata_contig31396:339..1349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2880.D8LLP6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutamine cyclotransferase
EggNOG OGs2QUQC@2759,COG3823@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31396.8481.1prot_H-paniculata_contig31396.8481.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31396 339..1343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.7316413-CDS-H-paniculata_contig31396:338..4311622929967.7316413-CDS-H-paniculata_contig31396:338..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31396 339..431 -
1691481090.611027-CDS-H-paniculata_contig31396:338..4311691481090.611027-CDS-H-paniculata_contig31396:338..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31396 339..431 -
1622929967.7513318-CDS-H-paniculata_contig31396:1184..13431622929967.7513318-CDS-H-paniculata_contig31396:1184..1343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31396 1185..1343 -
1691481090.620129-CDS-H-paniculata_contig31396:1184..13431691481090.620129-CDS-H-paniculata_contig31396:1184..1343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31396 1185..1343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.7716637-UTR-H-paniculata_contig31396:1343..13491622929967.7716637-UTR-H-paniculata_contig31396:1343..1349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31396 1344..1349 -
1691481090.627701-UTR-H-paniculata_contig31396:1343..13491691481090.627701-UTR-H-paniculata_contig31396:1343..1349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31396 1344..1349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31396.8481.1

>prot_H-paniculata_contig31396.8481.1 ID=prot_H-paniculata_contig31396.8481.1|Name=mRNA_H-paniculata_contig31396.8481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MTEDGRSLGKINELEFIKGYVFANVWFDDHLYKIDPATGQVVDTYNFVEL
YPPHLRKQELHSREACLNGIAWDPIEDVVYLTGE
back to top

mRNA from alignment at H-paniculata_contig31396:339..1349-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31396.8481.1 ID=mRNA_H-paniculata_contig31396.8481.1|Name=mRNA_H-paniculata_contig31396.8481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1011bp|location=Sequence derived from alignment at H-paniculata_contig31396:339..1349- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTATGACGGAGGATGGACGATCGCTGGGTAAGATAAATGAGCTCGA GTTCATCAAGGGCTATGTGTTCGCCAACGTGTGGTTCGATGATCACCTAT ACAAGATCGACCCGGCGACGGGTCAGGTGGTGGACACGTACAATTTTGTG GAACTTTACCCACCTGTGAGTGCGCGCGCGAAAGAGAGTTGAAGCATATA TTGGATCTTTTTCGTTTTGAGACCTTGGTAGTGGCGTGTTTCTATTTTTC ACAAATTGTGTAAAAAAAGAAAAAGAAAAAGAAGGTTGTTCATCTAGCCA TGATCCTCCGAACTTTTCTTTTTCTTTTTTTGATGGATTTGGAATTTTTT GTTCTTGTTGATAATATCCTGTAGTGTGTTTTTTTTATTCACGTGTTTGA AATCATTTTCTTCCCTGTCTTCGCCGTGATCGTGGTTATTTAATATATAT GTATATATATATATATACACACACATGTATACCCTTTTTCAAGAGACCGG CCTGAGTGTCGATACATCTGGTCTGTACAAAGCGTCAAACGTTGAAACCC TTTGTGGACTGCCCAGCTTTGAGTGTGAATTTTCGACATATATATATATA TATATTTCAACTTTTCCCCTGCTGTTGTCTCTTCTGTCTCATGCCCGTGA TTGTCGTTGCTGTCGGCTGTCGATATTTGTGTTCTGGTTTGCACTATTGC TTACATGTACGTCGTCGCTTTCCCCCCCCATATCGGCGCATGTTCGTTCC CCCCCCCCCTCCTCCCTCCCTCCCCCCCTCCCCCCTTGTCATATATTTTT CGTTGGATTTGGTTGCTCTTCCTCTTTTTTTCTTTTTGGTATTTTCTCTT GTCTTTTTCAACGTATTGCCGGATGTTTGTTCGTTTTTGATGGCCAATAT ATATAACCCGCCGACCAGCATTTGAGGAAACAGGAATTGCATTCTCGTGA AGCCTGTCTGAACGGCATTGCTTGGGACCCAATTGAAGACGTGGTATATC TCACGGGTGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31396:339..1349-

>mRNA_H-paniculata_contig31396.8481.1 ID=mRNA_H-paniculata_contig31396.8481.1|Name=mRNA_H-paniculata_contig31396.8481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig31396:339..1349- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGAGGATGGACGATCGCTGGGTAAGATAAATGAGCTCGAGTTCAT
CAAGGGCTATGTGTTCGCCAACGTGTGGTTCGATGATCACCTATACAAGA
TCGACCCGGCGACGGGTCAGGTGGTGGACACGTACAATTTTGTGGAACTT
TACCCACCTATGACGGAGGATGGACGATCGCTGGGTAAGATAAATGAGCT
CGAGTTCATCAAGGGCTATGTGTTCGCCAACGTGTGGTTCGATGATCACC
TATACAAGATCGACCCGGCGACGGGTCAGGTGGTGGACACGTACAATTTT
GTGGAACTTTACCCACCTCATTTGAGGAAACAGGAATTGCATTCTCGTGA
AGCCTGTCTGAACGGCATTGCTTGGGACCCAATTGAAGACGTGGTATATC
TCACGGGTGAGCATTTGAGGAAACAGGAATTGCATTCTCGTGAAGCCTGT
CTGAACGGCATTGCTTGGGACCCAATTGAAGACGTGGTATATCTCACGGG
TGAG
back to top