prot_H-paniculata_contig3139.8480.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3139.8480.1
Unique Nameprot_H-paniculata_contig3139.8480.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length895
Homology
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 566 bits (1460), Expect = 2.000e-185
Identity = 401/962 (41.68%), Postives = 518/962 (53.85%), Query Frame = 0
Query:    1 MENLLPAVANIDVTSNDFREAALPYQQWEAKRTQCLLSTPSDIGHLLPPISKTSIKCGHAGT--PPPAPPPRTSNASLSHPAPVDRNLSGLYDPALDPSPIGMEERGATQPVRITRIVPSSNPSGYRNQISREESERDG-NLTINVTIINRYRGENGKQREDRFDDE----NDTNRQENEQQVAGVSAVDVFVQGFSNDIQHATLLPSETFRRSLHQRRSMRSPPPHSDLGLFSNVDPEKLVYADCEEEGRDGDPGLTILLASTGDWFGC------SEEIAPQHERKIENNHHGDCQSNGTHNKATRIIFQGESRDGEPVLARNAFRVQFEPGPLGMELEEDPLQRGIVQVRRILQASQAEQDGRLSPGFLLVAVGDWDQHPTDSWPSSQERFGTVPGSIVN--------------RNRYTDTSASSDRPGPAPIRSLTDFEKAALHRDSDHLFVVWALDRLAPEAIAALGEPPTMALNGTPRSFEIGPHLVSREWSAPSSHNYAIGKGGAKT-----DSREKCHIYSNDTA----GSERMIIGGRGRRDMSSLEKEGRDEHSFSRADEGPTTMSS-------ALAQGVMQNTHGKSGSPRSTDYFLG-KRSSDNMPLSQQKSRRGSSIQRREKGA-------------WEFETGGGMFDENDQGLAARRRPHQGDEG-SSCNGTREEIEGKRSVLPLGLQASAVDEIAVFIWFCNNHESSVLQKVSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQHHAAMNPNFPPKEPLGRKAGSQQKSEKRGNRGFGVMAPATVSPLPPLIALYTHYLGDRD---CCVVRLGDAMAVARMTGSVLWSPSNMTLSLIRQAKVGIAGPSICRLSDAGKTAMERAGVAQGKKRLCMAGRERETEETRSTKERARVRGEKLRILDEMRAWRTHP------PVDSTAEHGATGGLGKGAPNLRVVMTGSS 895
            MENLLP VA IDVTSN FRE +LPYQQWE KRT    +TPS++GHLLPPI     +   +G+  PP +P       SL  PAPVDRN SGLYDPALDPSPIG EERG  QPVRI+RIVP  +      ++       +G ++   VT++N +R ++ + R      +     D   ++ E+       +DVFV+GFS  I H TLLPSE F R+L  +   + PP  S L     +  +   Y D     R+G  GLT+ LA T +W G        E+     E  I +    D +   T  + T +IFQ E  DG P  +RNAFRVQFEPGPLG+ELEE P +RGIV+VRR+LQA QAE DGRLS G L+VAVG WD+   +         G   G +                R+   D  + +     A IRSL DFE+A   R+ D LFV+WALDR APEA+AALG P    +   PR            WS  S ++    +GG +         E+   +   T+    G E  +  G    + ++    GRD   +S + + P   SS       A   G +Q       +  +T  F   K  + +  L+    R G   +  E GA             WEFETGGG+FD++DQGLAAR+ P +     +      +E E K    PLGL++SAVD++AVFIWFCNNHES+V+ KVSWINYDGR +PRR L PG  YFERSFATHPWV++H    + N      L   AG QQ+ EKR + G G  APA + P PP  A      GD D    CVVRLGDAMA+A+ TGS++W+P+  TLS+ +QA+VG+ G S    +  G    +  G+  G KR CMAG+ RE EE R+   RA VR EK R+L+EM+AWRTHP              G  G LG+G PNLRVVM G S
Sbjct:    1 MENLLPVVAGIDVTSNHFRETSLPYQQWETKRTHHTPTTPSEVGHLLPPIGGRKPRRDESGSSLPPISP---YVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRIVPRQDSGLGALELQGAARSAEGPHIPTAVTVLNGHRTQHMRDRTSAPAGDCASAADVLSEDEER------CIDVFVEGFSRGIDHETLLPSEMFCRAL--QHGSQGPPKPSSL-----IPEDSRHYLDV----REGYLGLTVFLARTSEWSGTIDGGVQGEKQDEPIEPGIGDESDRDDRKLATETEITHMIFQRE--DGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDEASANGALRPNTASGAGAGHVALDGVDIYGNLDVPALRSSAMDGGSGAKSHESAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPRG-----------WSPASLYSRRRNEGGGRARGAFPPGSERQRPFEASTSPKWQGYEETVPAGAPGWETATSLARGRDSLGYSLSSDRPKLASSPRNQASHAAGGGQLQAXXXXREADLATSAFGSPKEVTGSERLAAGIDRLGWPSRESEGGAPRFGEGGARSAQGWEFETGGGIFDDSDQGLAARKHPGRSQATLAPAAAPADETEKKLPTFPLGLESSAVDDLAVFIWFCNNHESAVM-KVSWINYDGRRVPRRSLAPGACYFERSFATHPWVIEH---SDSNHYGNRSLH--AGGQQE-EKRESTGSG--APAPLQPSPPREA------GDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEDGGGLDPGMKRQCMAGQRREAEEARARAARAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGLS 914          
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 504 bits (1298), Expect = 5.640e-161
Identity = 379/960 (39.48%), Postives = 488/960 (50.83%), Query Frame = 0
Query:   29 EAKRTQCLLSTPSDIGHLLPPIS-KTSIKCGHAGTPPPAPPPRTSNASLSHPAPVDRNLSGLYDPALDPSPIGMEERGATQPVRITRIVPSSNPSGYRNQISREESERDG-NLTINVTIINRYRGENGKQREDRF-----DDENDTNRQENEQQVAGVSAVDVFVQGFSNDIQHATLLPSETFRRSLHQRRSMRSPPPHSDLGLFSNVDPEKLVYADCEEEGRDGDPGLTILLASTGDWFGCSEEIAPQHERKIENNHHGDCQSNGTHNKA-TRIIFQGESRDGEPVLARNAFRVQFEPGPLGMELEEDPLQRGIVQVRRILQASQAEQDGRLSPGFLLVAVGDWDQHPTDSWPSSQERFGTVPGSIVN--------------RNRYTDTSASSDRPGPAPIRSLTDFEKAALHRDSDHLFVVWALDRLAPEAIAALGEPPTMALNGTPRSFEIGPHLVSREWSAPSSHNYAIGKGGAKTDSREKCHIYSNDTAGSERMIIGGRGRRDMSSLEKEGRDEHSFSRADEGPTTMSSALAQ-------GVMQNTHGKS---------GSPRSTDYFLGKRSSDNMPLSQQKSRRGSSIQRREKGA-----WEFETGGGMFDENDQGLAARRRPHQGDEGSSCNGT-REEIEGKRSVLPLGLQASAVDEIAVFIWFCNNHESSVLQK-----------------------------------------VSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQHHAAMNPNFPPKEPLGRKAGSQQKSEKRGNRGFGVMAPATVSPLPPLIALYTHYLGDRD---CCVVRLGDAMAVARMTGSVLWSPSNMTLSLIRQAKVGIAGPSICRLSDAGKTAMERAGVAQGKKRLCMAGRERETEETRSTKERARVRGEKLRILDEMRAWRTHP------PVDSTAEHGATGGLGKGAPNLRVVMTGS 894
            + KRT    +TPSD+GHLLPPI  +   + G   + PP PP      SL  PAPVDRN SGLYDPALDPSPIG EERG  QPVRI+R+VP  +      ++  E    +G  +   VT++N Y   N + R DR      D  + T+    +++    S +DVFV+GFS  + H TLLPSE F R+L  +   + PP  S L     +  +   Y D     R+G  GLT+ LA T +W G  +    Q E++ E    G          A TR+IFQ E  DG P  +RNAFRVQFEPGPLG+ELEE P  RGIV+VRR+LQA QAE DGRLS G L+VAVG WD+   +         G   G +V               R+   D  + ++    A IRSL DFE+A   R+ D LFV+WALDR APEA+AALG P    +   PR +        R              G  +    E     S  + G E     G   R+ +++    RD   +S + + P   S A  Q       G +Q   G+          GSP+         +  N      +  +G + +  E GA     WEFETGGG+FD++DQGLAAR+ P +     +   T  +E E K    PLGL++SAVD++AVFIWFCNNHES+V++                                          VSWI+YDGR +PRR L PG  YFERSFATHPWV+QH    + N          AG QQ+ EK    G G  AP  + P PP  A      GD D    CVVRLGD MAVA+ TGS++W+P+  TLS+ +QA+VG+ G S    +  G    E  G+  G KRLCMAG+ RE EE R+   RA VR EK R+L+E++AWRTHP              G  G LG+G PNLRVVM GS
Sbjct:   23 QTKRTHHTPTTPSDVGHLLPPIGGRKPRRDGSGSSLPPIPP--CVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRVVPRQDSGLGAQELQGEARSAEGLPIPTVVTVLNGY---NTQHRRDRTSAPAGDYASATHVLSEDEE----SCIDVFVEGFSRGVDHETLLPSEMFCRAL--QHGSQGPPKPSSL-----ISEDSRHYLDV----REGYLGLTVFLARTSEWSGTIDG-GVQGEKQDECIEPGIGDGKLAAEMAITRMIFQRE--DGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDESSANGTLRPSTASGAGTGHVVLDGVDIYGNLDVPALRSSAMDGGSGAEAHKSAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPRGWSPASVYSRRRNEGRGRVRGTFPSGSERQRPFEASK--SPKSQGYEESEPEGALGRETTTILARSRDSLRYSLSSDRPKLASFARNQASHAAGGGQLQTGGGQPEADLAMSAFGSPKEVTGSERLAAGINRLGWPSREGKGGAPRFGEGGARNAIGWEFETGGGIFDDDDQGLAARKHPARRQATLAPAATPADEAEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVEQPHEGVGNPVRGFGFCWEKEHFVLTPRDTHGVPLIQRWHVVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQH---SDSNQAGSNDRSLHAGGQQE-EKCEPTGSG--APVPLKPSPPREA------GDDDDAELCVVRLGDTMAVAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEEGGGLDPGMKRLCMAGQRREAEEARARAARAVVREEKARVLEEIKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS 945          
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: A0A835ZGW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.010e-16
Identity = 118/438 (26.94%), Postives = 173/438 (39.50%), Query Frame = 0
Query:  301 SRDGEPVLARNAFRVQFEPGPLGMELEEDPLQRGIVQVRRILQASQAEQDGRLSPGFLLVAVGDWDQHPT----DSWPSSQERFGTVPGSIVNRNRYTDTSASSDRPGPAPIRSLTDFEKAALHRDSDHLFVVWALDRLAPEAIAALGEPPTMALNGTPRSFEIGPHLVSREWSAPSSHNYAIGKGGAKTDSREKCHIYSNDTAGSERMIIGGRGRRDMSSLEKEGRDEHSFSRADEGPTTMSSALAQGVMQNTH--GKSGSPRST-DYFLGKRSSDNMPLSQQKSRRGSSIQRREKG-AWEFETGGGMFDENDQGL--------------------AARRRPHQGDEGSSCNGTREEIEGKRSVLPLGLQASAVDEIAVFIWFCNNHESSVLQKVSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQHHAAMNPN 710
            S DG   + R+ +RV F  GP+GMEL+ D   RG+V        SQ      L P  LL+ +G   Q        +  + + R G +   I+    +  ++  ++R     +RSL DFE  A+ RD D    ++ LD  +PEA+ A                          W   + H     +GG +   +      +     ++ MI+    R          RD     R+D+G    +      V       G  GS  +  D F  +   D                  E+G  W F TGGG+ + +D  L                    AAR R  +G   +S            S LPL + AS  D   VF+ F N H +  L +V W++Y G+ +PRR L PG+ YFERSFA+HPW+LQ   AM P+
Sbjct:  241 SEDGTIPIPRSVYRVDFAAGPMGMELQCDA-HRGLV--------SQCLMPTYL-PVLLLIVIGRTQQRGVLRGGQAAANGRVRAGHL---ILAAGGWRASARPANR---VVVRSLADFEGIAVGRDPDVPLSIFFLDPDSPEAVQAF-------------------------WEEDALHC----EGGYRAQRQRSAEAVAASMRRADSMIVRRHAR---------ARD---IMRSDDGSAASAGGCDSSVSXXXXXDGNCGSXEAXGDGFNEEHEED-----------------AEQGNGWGFATGGGILESHDAVLSPPPRDAPAGDIDSDDDGQVAARVRRSEGAVPASSQSPXXXXXXXLS-LPLSMGASKADVAPVFLCFSNAHATMKL-RVGWLDYGGQNVPRRVLLPGQTYFERSFASHPWLLQ---AMGPS 599          
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: A0A6U3WMY5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3WMY5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.710e-5
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 0
Query:  593 WEFETGGGMFDENDQ----GLAARRRPHQGDEGSSCNGTREEIEGKRSVL----------PLGL--QASAVDEIAVFIWFCNNHESSVLQKVSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQ 702
            W+F TG  + D +D+    GL A+R  H        NG    +    +V+          P+G   + S  D IAV ++  N+   + L+ +SW+NY+G L+PR  LE G  + E+++++HPW LQ
Sbjct:   24 WQFATGANLPDFDDESDALGLVAQRTGHV------SNGKMPHLMENDAVVLGEQMMPHSSPVGYPPKRSDRDAIAVTLYVVNHCTKTKLE-LSWMNYEGTLVPRAVLEAGTSHMEQTWSSHPWRLQ 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7E5_ECTSI2.000e-18541.68VHL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVY5_9PHAE5.640e-16139.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGW3_9STRA2.010e-1626.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U3WMY5_9STRA5.710e-531.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024053von Hippel-Lindau disease tumour suppressor, beta domainPFAMPF01847VHLcoord: 647..702
e-value: 6.3E-5
score: 22.8
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyGENE3D2.60.40.780coord: 636..715
e-value: 3.7E-9
score: 38.6
IPR036208VHL superfamilySUPERFAMILY49468VHLcoord: 644..704

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3139contigH-paniculata_contig3139:11125..15975 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3139.8480.1mRNA_H-paniculata_contig3139.8480.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3139 11125..15975 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3139.8480.1 ID=prot_H-paniculata_contig3139.8480.1|Name=mRNA_H-paniculata_contig3139.8480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=895bp
MENLLPAVANIDVTSNDFREAALPYQQWEAKRTQCLLSTPSDIGHLLPPI
SKTSIKCGHAGTPPPAPPPRTSNASLSHPAPVDRNLSGLYDPALDPSPIG
MEERGATQPVRITRIVPSSNPSGYRNQISREESERDGNLTINVTIINRYR
GENGKQREDRFDDENDTNRQENEQQVAGVSAVDVFVQGFSNDIQHATLLP
SETFRRSLHQRRSMRSPPPHSDLGLFSNVDPEKLVYADCEEEGRDGDPGL
TILLASTGDWFGCSEEIAPQHERKIENNHHGDCQSNGTHNKATRIIFQGE
SRDGEPVLARNAFRVQFEPGPLGMELEEDPLQRGIVQVRRILQASQAEQD
GRLSPGFLLVAVGDWDQHPTDSWPSSQERFGTVPGSIVNRNRYTDTSASS
DRPGPAPIRSLTDFEKAALHRDSDHLFVVWALDRLAPEAIAALGEPPTMA
LNGTPRSFEIGPHLVSREWSAPSSHNYAIGKGGAKTDSREKCHIYSNDTA
GSERMIIGGRGRRDMSSLEKEGRDEHSFSRADEGPTTMSSALAQGVMQNT
HGKSGSPRSTDYFLGKRSSDNMPLSQQKSRRGSSIQRREKGAWEFETGGG
MFDENDQGLAARRRPHQGDEGSSCNGTREEIEGKRSVLPLGLQASAVDEI
AVFIWFCNNHESSVLQKVSWINYDGRLIPRRYLEPGEFYFERSFATHPWV
LQHHAAMNPNFPPKEPLGRKAGSQQKSEKRGNRGFGVMAPATVSPLPPLI
ALYTHYLGDRDCCVVRLGDAMAVARMTGSVLWSPSNMTLSLIRQAKVGIA
GPSICRLSDAGKTAMERAGVAQGKKRLCMAGRERETEETRSTKERARVRG
EKLRILDEMRAWRTHPPVDSTAEHGATGGLGKGAPNLRVVMTGSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024053VHL_beta_dom
IPR037140VHL_beta_dom_sf
IPR036208VHL_sf