mRNA_H-paniculata_contig1132.848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1132.848.1 vs. uniprot
Match: D8LJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE2_ECTSI) HSP 1 Score: 379 bits (973), Expect = 1.650e-114 Identity = 312/785 (39.75%), Postives = 393/785 (50.06%), Query Frame = 1
Query: 550 SGHESQVQCMAIDNRGSLLVTGDESGAIFARILHHRNSKSAHQPPQRDRDGTQFGGGRSSSGNTGDGNA-------TAVASAAAHEGGVLAVSHVDDRPSRISGNEDSDSEPKDEEMLFVSGGQGGIVRLWRATYGLAGH----AGQTGSVMRLRLRVLMDMHIGGCQVSSLATCPSYRAPLVVVGCNEGIVFGFAL-----------------EPLVDAPA-------SDGPFTSAG-----------EMGRLLTKLEHTSRRITSVTCSREQELIATADTDGIVRTYRPLSLRGANCSDSVHDVDSVSVVDGLPPWQLELIVECRLGSSPVACEFAMEKENALASKEAKDKGGGIEREVLRTCTRDGVRVRVWPGADLPTRPLRPLPXXXXSSPXXXXXXNPTEHTPVRMPTHDR---PTQTRYMAGSNNMGQPPRSFGAEDRFHXXXXXXXX--------RQSVDPKEAFVGEEGVEGDATGLGRTGNVDEGEE-EEEEPVPRASLPVPGLGPTTPRRVSFASAEQVCYSVDS--GNRKEDDESESSFAMYSNGTQEKGDCNNVLEEEKXXXXXXXXXXXXPQSSGPSYPGR-LRQHWGTNLVRREG-RLPADAATGGQEGA-FVPPSDLQEPSLLSTMMEQAALERRMEEEFDSRATLERLNQPAYRGPAASVVNIHPLAKTFEGLVPVSLDAPPPRPKRMGKQVSRAHLSRVEEGRITEQDLLFDGVEPAVCSIAPEIGIDTSRTVWP--QVEWYGGRPAYSQKEDASFVSDRIWSWSLR 2709
+G +V C++ID RG LLVTGDESGAI AR+LHH ++S DGT G SS G A AH G VLA+SHV+ G D D+ LFVSGG+GG+VRLW+A AG G + + + +L DM +GG QVS LA S P+V+ G EG VF F L P V P S G ++G E+G +L K EHTS + V CS+EQELIA D GIVRTYRPL RG + ++ D + + EL+VECRLG+ PV+CEF + + + +G G E EVLRTCT GV +R+WP A LPTRP+RP P P R+P + P AG++ XXXXXXXX +++ DP + F ++ G G G V GE EEEEP R P+P P PRRVSFA A+QV D G+ +E XXXX ++SG + P R LRQ WGT+ G R ++T + A FV PS +QEPSL ST EQA LERRM EEFD E + P YR AA+ VNIHPLAKTFEGLVPVSLDAPPPRPKR GKQVS++HLS+V+E RITE+DL FDG+EP CS G T+ +WP ++EWYGGR +++ + +S SDR+WS R
Sbjct: 11 TGRRQKVGCLSIDRRGELLVTGDESGAICARLLHHSGNRSG--------DGTACG----SSSVEGXXXXXXXXXXXVAEVVREAHSGEVLAISHVE------GGAGD------DDPALFVSGGKGGVVRLWKAACLERSRETVAAGGGGGDLEVHVELLKDMLVGGFQVSCLAASLSPTVPIVLAGTAEGTVFAFHLLQAQEPSDRRDREAEDDRPTVGRPTVGYGDRGSRGGSVASGRERPDNAVGRTELGAVLMKFEHTSEPVERVCCSQEQELIAATDAAGIVRTYRPLLPRGGSTDNNPSDGAPPTAAAAAEARRFELVVECRLGARPVSCEFGSGPRGVESGGDRR-RGVGGEGEVLRTCTARGV-LRLWPTASLPTRPMRP----------------PPSSAPTRLPDYHEALAPLPHPSNAGTDXXXXXXXXXXXXXXXXXXXXXXXXXAMAAGTEQENRDPSDPFSRWTAIDAKGRGPGLVG-VGGGEGGEEEEPSARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELGAPRXXXXAPTPMRASGATGPPRRLRQTWGTSASSPRGSRARRGSSTDASDDASFVAPSRMQEPSLWSTAAEQAELERRMTEEFDGSGVPEPV-APVYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPKRKGKQVSKSHLSKVQEQRITEEDLAFDGMEPD-CSAIIGFGSSTAGRMWPHEELEWYGGRKMFAELDRSSTASDRVWSLGRR 750
BLAST of mRNA_H-paniculata_contig1132.848.1 vs. uniprot
Match: A0A6H5L2I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I0_9PHAE) HSP 1 Score: 358 bits (919), Expect = 5.430e-107 Identity = 311/768 (40.49%), Postives = 385/768 (50.13%), Query Frame = 1
Query: 568 VQCMAIDNRGSLLVTGDESGAIFARILHHRNSKSAHQPPQRDRDGTQFGGGRSSSGNTGDGNATAVASAA--AHEGGVLAVSHVDDRPSRISGNEDSDSEPKDEEMLFVSGGQGGIVRLWRATY----GLAGHAGQTGSVMRLRLRVLMDMHIGGCQVSSLATCPSYRAPLVVVGCNEGIVFGFAL------------EPLVDAPA----------------SDGPFTSAG--EMGRLLTKLEHTSRRITSVTCSREQELIATADTDGIVRTYRPLSLRGANCSDSVHDVDSVSVVDGLPPWQLELIVECRLGSSPVACEFAMEKENALASKEAKDKGGGIEREVLRTCTRDGVRVRVWPGADLPTRPLRPLPXXXXSSPXXXXXXNPTEHTPVRMPT-HDR--PTQTRYMAGSNNMGQPPRSFGAEDRFHXXXXXXXX---RQSVDPKEAFVGEEGVEGDATGLGRTGNVDEGEEEEE-EPVPRASLPVPGLGPTTPRRVSFASAEQVCYSVD----SGNRKEDDESESSFAMYSNGTQEKGDCNNVLEEEKXXXXXXXXXXXXPQSSGPS-YPGRLRQHWGTNLVR-REGRLPADAATGGQEGAFVPPSDLQEPSLLSTMMEQAALERRMEE---EFDSRATLERLNQPAYRGPAASVVNIHPLAKTFEGLVPVSLDAPPPRPKRMGKQVSRAHLSRVEEGRITEQDLLFDGVEPAVCSIAPEIGIDTSRTVWP--QVEWYGGRPAYSQKEDASFVSDRIWSWSLR 2709
V C++ID RG LLVTGDESGAI AR+LHH ++S DGT +G G + VA AH G VLA+SHV+ G D D+ LFVSGG+GG+VRLW+A AG +G + +++ +L DM +GG QVS LA S P+V+ G EG VF F L E D PA + P + G E+G +L K EHTS I V CS+EQELIA D GIVRTYRPL R + ++ D + + EL+VECRLG+ PV GG E EVLRTCT G+ +R+W A LPTRP+RP P P R+P H+ P AG+++ XXXXXXX +++ DP + F ++ +G G G V GE EE E R P+P P PRRVSFA A+QV D SGN XXXXXXXXXXXX ++SG + PGRLRQ WGT+ R R + + AFV PS +QEPSL ST EQ LERRM E EFD A E P YR AA+ VNIHPLAKTFEGLVPVSLDAPPPRP R GKQVS+ HLS+V+E RITE+DL FDG+EP CS+ G T +WP ++EWYGGR ++ + +S SDR+WS R
Sbjct: 5 VGCLSIDRRGELLVTGDESGAICARLLHHSGNRSG--------DGTAYGSSSFEGGPSXXXXXXXVAEVLREAHSGEVLAISHVE------GGAGD------DDPALFVSGGKGGVVRLWKAACLERSRETAAAGGSGGDLEVQVELLKDMLVGGFQVSCLAASLSPTVPIVLAGTAEGTVFAFHLLQAQEPSDRRDGEAEDDRPAVGYGDRGGRGGSAASGREPPDDAVGRTELGAVLMKFEHTSEPIEGVCCSQEQELIAATDAAGIVRTYRPLLPRRVSTDNNPGDGAPPTTAAAAEARRFELVVECRLGARPVXXXXXXXXXXXXXXXXXXXVGG--EGEVLRTCTARGI-LRLWLTASLPTRPMRP----------------PXXSAPTRLPDDHEALAPLPHTSNAGTDSSXXXXXXXXXXXXXXXXXXXXXVGAEQENRDPSDPFSRSTAIDATGSGSGVVG-VGGGERGEEVELTARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSGNNXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRASGANGTPGRLRQTWGTSTSSPRSNRARRGCSMDASDDAFVAPSRMQEPSLWSTAAEQVELERRMTEATHEFDGGAVPEPA-APTYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPMRKGKQVSKRHLSKVQEQRITEEDLAFDGMEPD-CSVIMGFGSSTVGRMWPYEELEWYGGRKMSAELDHSSTASDRVWSLGRR 723 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1132.848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1132.848.1 >prot_H-paniculata_contig1132.848.1 ID=prot_H-paniculata_contig1132.848.1|Name=mRNA_H-paniculata_contig1132.848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=902bp MEETGLRLCPEDPIKVYTDTMEVTACCWHPSNPDTIGVCSNDGSFVLVPNback to top mRNA from alignment at H-paniculata_contig1132:5897..14985+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1132.848.1 ID=mRNA_H-paniculata_contig1132.848.1|Name=mRNA_H-paniculata_contig1132.848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9089bp|location=Sequence derived from alignment at H-paniculata_contig1132:5897..14985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1132:5897..14985+ >mRNA_H-paniculata_contig1132.848.1 ID=mRNA_H-paniculata_contig1132.848.1|Name=mRNA_H-paniculata_contig1132.848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5412bp|location=Sequence derived from alignment at H-paniculata_contig1132:5897..14985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |