mRNA_H-paniculata_contig3139.8480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI) HSP 1 Score: 566 bits (1460), Expect = 2.000e-185 Identity = 401/962 (41.68%), Postives = 518/962 (53.85%), Query Frame = 1
Query: 1 MENLLPAVANIDVTSNDFREAALPYQQWEAKRTQCLLSTPSDIGHLLPPISKTSIKCGHAGT--PPPAPPPRTSNASLSHPAPVDRNLSGLYDPALDPSPIGMEERGATQPVRITRIVPSSNPSGYRNQISREESERDG-NLTINVTIINRYRGENGKQREDRFDDE----NDTNRQENEQQVAGVSAVDVFVQGFSNDIQHATLLPSETFRRSLHQRRSMRSPPPHSDLGLFSNVDPEKLVYADCEEEGRDGDPGLTILLASTGDWFGC------SEEIAPQHERKIENNHHGDCQSNGTHNKATRIIFQGESRDGEPVLARNAFRVQFEPGPLGMELEEDPLQRGIVQVRRILQASQAEQDGRLSPGFLLVAVGDWDQHPTDSWPSSQERFGTVPGSIVN--------------RNRYTDTSASSDRPGPAPIRSLTDFEKAALHRDSDHLFVVWALDRLAPEAIAALGEPPTMALNGTPRSFEIGPHLVSREWSAPSSHNYAIGKGGAKT-----DSREKCHIYSNDTA----GSERMIIGGRGRRDMSSLEKEGRDEHSFSRADEGPTTMSS-------ALAQGVMQNTHGKSGSPRSTDYFLG-KRSSDNMPLSQQKSRRGSSIQRREKGA-------------WEFETGGGMFDENDQGLAARRRPHQGDEG-SSCNGTREEIEGKRSVLPLGLQASAVDEIAVFIWFCNNHESSVLQKVSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQHHAAMNPNFPPKEPLGRKAGSQQKSEKRGNRGFGVMAPATVSPLPPLIALYTHYLGDRD---CCVVRLGDAMAVARMTGSVLWSPSNMTLSLIRQAKVGIAGPSICRLSDAGKTAMERAGVAQGKKRLCMAGRERETEETRSTKERARVRGEKLRILDEMRAWRTHP------PVDSTAEHGATGGLGKGAPNLRVVMTGSS 2685
MENLLP VA IDVTSN FRE +LPYQQWE KRT +TPS++GHLLPPI + +G+ PP +P SL PAPVDRN SGLYDPALDPSPIG EERG QPVRI+RIVP + ++ +G ++ VT++N +R ++ + R + D ++ E+ +DVFV+GFS I H TLLPSE F R+L + + PP S L + + Y D R+G GLT+ LA T +W G E+ E I + D + T + T +IFQ E DG P +RNAFRVQFEPGPLG+ELEE P +RGIV+VRR+LQA QAE DGRLS G L+VAVG WD+ + G G + R+ D + + A IRSL DFE+A R+ D LFV+WALDR APEA+AALG P + PR WS S ++ +GG + E+ + T+ G E + G + ++ GRD +S + + P SS A G +Q + +T F K + + L+ R G + E GA WEFETGGG+FD++DQGLAAR+ P + + +E E K PLGL++SAVD++AVFIWFCNNHES+V+ KVSWINYDGR +PRR L PG YFERSFATHPWV++H + N L AG QQ+ EKR + G G APA + P PP A GD D CVVRLGDAMA+A+ TGS++W+P+ TLS+ +QA+VG+ G S + G + G+ G KR CMAG+ RE EE R+ RA VR EK R+L+EM+AWRTHP G G LG+G PNLRVVM G S
Sbjct: 1 MENLLPVVAGIDVTSNHFRETSLPYQQWETKRTHHTPTTPSEVGHLLPPIGGRKPRRDESGSSLPPISP---YVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRIVPRQDSGLGALELQGAARSAEGPHIPTAVTVLNGHRTQHMRDRTSAPAGDCASAADVLSEDEER------CIDVFVEGFSRGIDHETLLPSEMFCRAL--QHGSQGPPKPSSL-----IPEDSRHYLDV----REGYLGLTVFLARTSEWSGTIDGGVQGEKQDEPIEPGIGDESDRDDRKLATETEITHMIFQRE--DGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDEASANGALRPNTASGAGAGHVALDGVDIYGNLDVPALRSSAMDGGSGAKSHESAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPRG-----------WSPASLYSRRRNEGGGRARGAFPPGSERQRPFEASTSPKWQGYEETVPAGAPGWETATSLARGRDSLGYSLSSDRPKLASSPRNQASHAAGGGQLQAXXXXREADLATSAFGSPKEVTGSERLAAGIDRLGWPSRESEGGAPRFGEGGARSAQGWEFETGGGIFDDSDQGLAARKHPGRSQATLAPAAAPADETEKKLPTFPLGLESSAVDDLAVFIWFCNNHESAVM-KVSWINYDGRRVPRRSLAPGACYFERSFATHPWVIEH---SDSNHYGNRSLH--AGGQQE-EKRESTGSG--APAPLQPSPPREA------GDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEDGGGLDPGMKRQCMAGQRREAEEARARAARAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGLS 914
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE) HSP 1 Score: 504 bits (1298), Expect = 5.640e-161 Identity = 379/960 (39.48%), Postives = 488/960 (50.83%), Query Frame = 1
Query: 85 EAKRTQCLLSTPSDIGHLLPPIS-KTSIKCGHAGTPPPAPPPRTSNASLSHPAPVDRNLSGLYDPALDPSPIGMEERGATQPVRITRIVPSSNPSGYRNQISREESERDG-NLTINVTIINRYRGENGKQREDRF-----DDENDTNRQENEQQVAGVSAVDVFVQGFSNDIQHATLLPSETFRRSLHQRRSMRSPPPHSDLGLFSNVDPEKLVYADCEEEGRDGDPGLTILLASTGDWFGCSEEIAPQHERKIENNHHGDCQSNGTHNKA-TRIIFQGESRDGEPVLARNAFRVQFEPGPLGMELEEDPLQRGIVQVRRILQASQAEQDGRLSPGFLLVAVGDWDQHPTDSWPSSQERFGTVPGSIVN--------------RNRYTDTSASSDRPGPAPIRSLTDFEKAALHRDSDHLFVVWALDRLAPEAIAALGEPPTMALNGTPRSFEIGPHLVSREWSAPSSHNYAIGKGGAKTDSREKCHIYSNDTAGSERMIIGGRGRRDMSSLEKEGRDEHSFSRADEGPTTMSSALAQ-------GVMQNTHGKS---------GSPRSTDYFLGKRSSDNMPLSQQKSRRGSSIQRREKGA-----WEFETGGGMFDENDQGLAARRRPHQGDEGSSCNGT-REEIEGKRSVLPLGLQASAVDEIAVFIWFCNNHESSVLQK-----------------------------------------VSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQHHAAMNPNFPPKEPLGRKAGSQQKSEKRGNRGFGVMAPATVSPLPPLIALYTHYLGDRD---CCVVRLGDAMAVARMTGSVLWSPSNMTLSLIRQAKVGIAGPSICRLSDAGKTAMERAGVAQGKKRLCMAGRERETEETRSTKERARVRGEKLRILDEMRAWRTHP------PVDSTAEHGATGGLGKGAPNLRVVMTGS 2682
+ KRT +TPSD+GHLLPPI + + G + PP PP SL PAPVDRN SGLYDPALDPSPIG EERG QPVRI+R+VP + ++ E +G + VT++N Y N + R DR D + T+ +++ S +DVFV+GFS + H TLLPSE F R+L + + PP S L + + Y D R+G GLT+ LA T +W G + Q E++ E G A TR+IFQ E DG P +RNAFRVQFEPGPLG+ELEE P RGIV+VRR+LQA QAE DGRLS G L+VAVG WD+ + G G +V R+ D + ++ A IRSL DFE+A R+ D LFV+WALDR APEA+AALG P + PR + R G + E S + G E G R+ +++ RD +S + + P S A Q G +Q G+ GSP+ + N + +G + + E GA WEFETGGG+FD++DQGLAAR+ P + + T +E E K PLGL++SAVD++AVFIWFCNNHES+V++ VSWI+YDGR +PRR L PG YFERSFATHPWV+QH + N AG QQ+ EK G G AP + P PP A GD D CVVRLGD MAVA+ TGS++W+P+ TLS+ +QA+VG+ G S + G E G+ G KRLCMAG+ RE EE R+ RA VR EK R+L+E++AWRTHP G G LG+G PNLRVVM GS
Sbjct: 23 QTKRTHHTPTTPSDVGHLLPPIGGRKPRRDGSGSSLPPIPP--CVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRVVPRQDSGLGAQELQGEARSAEGLPIPTVVTVLNGY---NTQHRRDRTSAPAGDYASATHVLSEDEE----SCIDVFVEGFSRGVDHETLLPSEMFCRAL--QHGSQGPPKPSSL-----ISEDSRHYLDV----REGYLGLTVFLARTSEWSGTIDG-GVQGEKQDECIEPGIGDGKLAAEMAITRMIFQRE--DGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDESSANGTLRPSTASGAGTGHVVLDGVDIYGNLDVPALRSSAMDGGSGAEAHKSAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPRGWSPASVYSRRRNEGRGRVRGTFPSGSERQRPFEASK--SPKSQGYEESEPEGALGRETTTILARSRDSLRYSLSSDRPKLASFARNQASHAAGGGQLQTGGGQPEADLAMSAFGSPKEVTGSERLAAGINRLGWPSREGKGGAPRFGEGGARNAIGWEFETGGGIFDDDDQGLAARKHPARRQATLAPAATPADEAEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVEQPHEGVGNPVRGFGFCWEKEHFVLTPRDTHGVPLIQRWHVVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQH---SDSNQAGSNDRSLHAGGQQE-EKCEPTGSG--APVPLKPSPPREA------GDDDDAELCVVRLGDTMAVAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEEGGGLDPGMKRLCMAGQRREAEEARARAARAVVREEKARVLEEIKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS 945
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: A0A835ZGW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW3_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.010e-16 Identity = 118/438 (26.94%), Postives = 173/438 (39.50%), Query Frame = 1
Query: 901 SRDGEPVLARNAFRVQFEPGPLGMELEEDPLQRGIVQVRRILQASQAEQDGRLSPGFLLVAVGDWDQHPT----DSWPSSQERFGTVPGSIVNRNRYTDTSASSDRPGPAPIRSLTDFEKAALHRDSDHLFVVWALDRLAPEAIAALGEPPTMALNGTPRSFEIGPHLVSREWSAPSSHNYAIGKGGAKTDSREKCHIYSNDTAGSERMIIGGRGRRDMSSLEKEGRDEHSFSRADEGPTTMSSALAQGVMQNTH--GKSGSPRST-DYFLGKRSSDNMPLSQQKSRRGSSIQRREKG-AWEFETGGGMFDENDQGL--------------------AARRRPHQGDEGSSCNGTREEIEGKRSVLPLGLQASAVDEIAVFIWFCNNHESSVLQKVSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQHHAAMNPN 2130
S DG + R+ +RV F GP+GMEL+ D RG+V SQ L P LL+ +G Q + + + R G + I+ + ++ ++R +RSL DFE A+ RD D ++ LD +PEA+ A W + H +GG + + + ++ MI+ R RD R+D+G + V G GS + D F + D E+G W F TGGG+ + +D L AAR R +G +S S LPL + AS D VF+ F N H + L +V W++Y G+ +PRR L PG+ YFERSFA+HPW+LQ AM P+
Sbjct: 241 SEDGTIPIPRSVYRVDFAAGPMGMELQCDA-HRGLV--------SQCLMPTYL-PVLLLIVIGRTQQRGVLRGGQAAANGRVRAGHL---ILAAGGWRASARPANR---VVVRSLADFEGIAVGRDPDVPLSIFFLDPDSPEAVQAF-------------------------WEEDALHC----EGGYRAQRQRSAEAVAASMRRADSMIVRRHAR---------ARD---IMRSDDGSAASAGGCDSSVSXXXXXDGNCGSXEAXGDGFNEEHEED-----------------AEQGNGWGFATGGGILESHDAVLSPPPRDAPAGDIDSDDDGQVAARVRRSEGAVPASSQSPXXXXXXXLS-LPLSMGASKADVAPVFLCFSNAHATMKL-RVGWLDYGGQNVPRRVLLPGQTYFERSFASHPWLLQ---AMGPS 599
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Match: A0A6U3WMY5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3WMY5_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 5.710e-5 Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 1
Query: 1777 WEFETGGGMFDENDQ----GLAARRRPHQGDEGSSCNGTREEIEGKRSVL----------PLGL--QASAVDEIAVFIWFCNNHESSVLQKVSWINYDGRLIPRRYLEPGEFYFERSFATHPWVLQ 2106
W+F TG + D +D+ GL A+R H NG + +V+ P+G + S D IAV ++ N+ + L+ +SW+NY+G L+PR LE G + E+++++HPW LQ
Sbjct: 24 WQFATGANLPDFDDESDALGLVAQRTGHV------SNGKMPHLMENDAVVLGEQMMPHSSPVGYPPKRSDRDAIAVTLYVVNHCTKTKLE-LSWMNYEGTLVPRAVLEAGTSHMEQTWSSHPWRLQ 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3139.8480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3139.8480.1 >prot_H-paniculata_contig3139.8480.1 ID=prot_H-paniculata_contig3139.8480.1|Name=mRNA_H-paniculata_contig3139.8480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=895bp MENLLPAVANIDVTSNDFREAALPYQQWEAKRTQCLLSTPSDIGHLLPPIback to top mRNA from alignment at H-paniculata_contig3139:11125..15975+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3139.8480.1 ID=mRNA_H-paniculata_contig3139.8480.1|Name=mRNA_H-paniculata_contig3139.8480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4851bp|location=Sequence derived from alignment at H-paniculata_contig3139:11125..15975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3139:11125..15975+ >mRNA_H-paniculata_contig3139.8480.1 ID=mRNA_H-paniculata_contig3139.8480.1|Name=mRNA_H-paniculata_contig3139.8480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5370bp|location=Sequence derived from alignment at H-paniculata_contig3139:11125..15975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |