mRNA_H-paniculata_contig3139.8479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3139.8479.1
Unique NamemRNA_H-paniculata_contig3139.8479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: D7G4C7_ECTSI (ATP/GTP binding protein-like 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C7_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.090e-45
Identity = 77/88 (87.50%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:   22 QVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            QVLLNIVNFSKTKSLYREGLAPVVCSR RP WNRIPS+QVLYYR+P+GPGNRMAYVMSFLF+FD +A APY+FAY+FPYTYTDLQRYL
Sbjct:   36 QVLLNIVNFSKTKSLYREGLAPVVCSRGRPHWNRIPSSQVLYYRSPKGPGNRMAYVMSFLFKFDVAAAAPYFFAYAFPYTYTDLQRYL 123
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BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: A0A7S3G4H3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4H3_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 2.440e-25
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:   25 VLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            VL N+VNFSKTKSLYR+G++PVV S  R +W RIPS  V YYR+PR   ++M YVMSFLFQFD  A+  Y FAY +PY+Y+DLQRYL
Sbjct:   81 VLFNVVNFSKTKSLYRDGMSPVVRSESRQKWERIPSKSVFYYRSPR---HKMNYVMSFLFQFD-QADEIYSFAYCYPYSYSDLQRYL 163
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BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: A0A7S1KVG6_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KVG6_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 1.360e-24
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:   22 QVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +VLLNI NFSKTKSLYR G+ P+V S+ RPQW  IP  Q  YYR PR   +R +YVMSF+F FD   +  YYFAY FPYTY+DLQ++L
Sbjct:  200 RVLLNICNFSKTKSLYRNGMTPLVSSKQRPQWENIPERQCFYYRCPR---HRRSYVMSFMFVFDRDDDV-YYFAYCFPYTYSDLQKFL 283
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BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: UPI0007AC8E52 (cytosolic carboxypeptidase 6-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AC8E52)

HSP 1 Score: 96.7 bits (239), Expect = 6.570e-24
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 VDVGDFP---QVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +D+G+F    +V+ NIVNFSKTKSLYR+G++PVV S  RP+W R+P+  V YYR P    +R  YVMSF F FD   +  Y FAY +PYTY+ LQ YL
Sbjct:    1 MDIGEFVPKRRVIFNIVNFSKTKSLYRDGMSPVVKSTSRPKWQRLPAKNVYYYRCP---DHRRNYVMSFAFCFDREDDI-YQFAYCYPYTYSRLQHYL 94
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BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: UPI0011AE59BF (cytosolic carboxypeptidase 6-like n=1 Tax=Serinus canaria TaxID=9135 RepID=UPI0011AE59BF)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-23
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   22 QVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +V+ N+VNFSKTKSLYR+G+AP+V S  RP+W RIPS  V YYR P    +R  YVMSF F FD   +  Y FAY +PYTYT LQ YL
Sbjct:   17 RVIFNVVNFSKTKSLYRDGMAPMVKSTSRPKWQRIPSKNVYYYRCP---DHRKNYVMSFAFCFDREDDT-YQFAYCYPYTYTRLQHYL 100
[Close]
BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: A0A183KUH5_9TREM (Pepdidase_M14_N domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KUH5_9TREM)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-23
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   22 QVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +V+ N+VNFSKTKSLYREG++PVV S  RP W+RIP   V YYR+P     +  YVMSF F FDC  +  Y FAY +PYTY+ LQ YL
Sbjct:  111 RVIFNVVNFSKTKSLYREGMSPVVKSSSRPSWSRIPQKCVFYYRSPE---QKKKYVMSFAFSFDCEEDV-YQFAYCYPYTYSRLQTYL 194
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BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: A0A183MYQ4_9TREM (Uncharacterized protein n=1 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183MYQ4_9TREM)

HSP 1 Score: 99.4 bits (246), Expect = 1.750e-23
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   22 QVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +V+ N+VNFSKTKSLYREG++PVV S  RP W+RIP   V YYR+P     +  YVMSF F FDC  +  Y FAY +PYTY+ LQ YL
Sbjct:  111 RVIFNVVNFSKTKSLYREGMSPVVKSSSRPSWSRIPQKCVFYYRSPE---QKKKYVMSFAFSFDCEEDV-YQFAYCYPYTYSRLQTYL 194
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BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: A0A8C3MXJ8_GEOPR (ATP/GTP binding protein like 4 n=2 Tax=Aves TaxID=8782 RepID=A0A8C3MXJ8_GEOPR)

HSP 1 Score: 97.8 bits (242), Expect = 1.840e-23
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    4 DVGDFPQVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +V +  +V+ N+VNFSKTKSLYR+G+AP+V S  RP+W RIPS  V YYR P    +R  YVMSF F FD   +  Y FAY +PYTYT LQ YL
Sbjct:   75 NVKESQRVIFNVVNFSKTKSLYRDGMAPMVKSTSRPKWQRIPSKNVYYYRCP---DHRKNYVMSFAFCFDREDDT-YQFAYCYPYTYTRLQHYL 164
[Close]
BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: A0A8C3MQG2_GEOPR (ATP/GTP binding protein like 4 n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3MQG2_GEOPR)

HSP 1 Score: 97.8 bits (242), Expect = 2.320e-23
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    4 DVGDFPQVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +V +  +V+ N+VNFSKTKSLYR+G+AP+V S  RP+W RIPS  V YYR P    +R  YVMSF F FD   +  Y FAY +PYTYT LQ YL
Sbjct:   75 NVKESQRVIFNVVNFSKTKSLYRDGMAPMVKSTSRPKWQRIPSKNVYYYRCP---DHRKNYVMSFAFCFDREDDT-YQFAYCYPYTYTRLQHYL 164
[Close]
BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Match: A0A8C8B054_9STRI (ATP/GTP binding protein like 4 n=2 Tax=Neognathae TaxID=8825 RepID=A0A8C8B054_9STRI)

HSP 1 Score: 97.8 bits (242), Expect = 2.650e-23
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    4 DVGDFPQVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYYRAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL 285
            +V +  +V+ N+VNFSKTKSLYR+G+AP+V S  RP+W RIPS  V YYR P    +R  YVMSF F FD   +  Y FAY +PYTYT LQ YL
Sbjct:   88 NVKESQRVIFNVVNFSKTKSLYRDGMAPMVKSTSRPKWQRIPSKNVYYYRCP---DHRKNYVMSFAFCFDREDDT-YQFAYCYPYTYTRLQHYL 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3139.8479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4C7_ECTSI2.090e-4587.50ATP/GTP binding protein-like 4 n=1 Tax=Ectocarpus ... [more]
A0A7S3G4H3_9EUKA2.440e-2564.37Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S1KVG6_9EUKA1.360e-2461.36Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
UPI0007AC8E526.570e-2454.08cytosolic carboxypeptidase 6-like n=1 Tax=Sinocycl... [more]
UPI0011AE59BF1.270e-2359.09cytosolic carboxypeptidase 6-like n=1 Tax=Serinus ... [more]
A0A183KUH5_9TREM1.530e-2357.95Pepdidase_M14_N domain-containing protein n=1 Tax=... [more]
A0A183MYQ4_9TREM1.750e-2357.95Uncharacterized protein n=1 Tax=Schistosoma margre... [more]
A0A8C3MXJ8_GEOPR1.840e-2356.38ATP/GTP binding protein like 4 n=2 Tax=Aves TaxID=... [more]
A0A8C3MQG2_GEOPR2.320e-2356.38ATP/GTP binding protein like 4 n=1 Tax=Geospiza pa... [more]
A0A8C8B054_9STRI2.650e-2356.38ATP/GTP binding protein like 4 n=2 Tax=Neognathae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3139contigH-paniculata_contig3139:8468..9116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5.5e-38
Seed eggNOG ortholog2880.D7G4C7
Preferred nameAGBL4
KEGG koko:K05840
KEGG Pathwayko04020,ko04024,ko04080,ko04728,map04020,map04024,map04080,map04728
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0007610,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0012505,GO:0015630,GO:0015631,GO:0016787,GO:0018193,GO:0018200,GO:0018410,GO:0018991,GO:0019098,GO:0019538,GO:0022414,GO:0032501,GO:0032504,GO:0035608,GO:0035609,GO:0035610,GO:0036064,GO:0036211,GO:0042995,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0048609,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0070011,GO:0071704,GO:0098542,GO:0120025,GO:0120038,GO:0140096,GO:1901564
EggNOG free text desc.protein deglutamylation
EggNOG OGsCOG2866@1,KOG3641@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.44423-CDS-H-paniculata_contig3139:8467..86321622929967.44423-CDS-H-paniculata_contig3139:8467..8632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3139 8468..8632 -
1691481090.5195656-CDS-H-paniculata_contig3139:8467..86321691481090.5195656-CDS-H-paniculata_contig3139:8467..8632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3139 8468..8632 -
1622929967.4646604-CDS-H-paniculata_contig3139:8996..91161622929967.4646604-CDS-H-paniculata_contig3139:8996..9116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3139 8997..9116 -
1691481090.5295112-CDS-H-paniculata_contig3139:8996..91161691481090.5295112-CDS-H-paniculata_contig3139:8996..9116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3139 8997..9116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3139.8479.1prot_H-paniculata_contig3139.8479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3139 8468..9116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3139.8479.1

>prot_H-paniculata_contig3139.8479.1 ID=prot_H-paniculata_contig3139.8479.1|Name=mRNA_H-paniculata_contig3139.8479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
VDVGDFPQVLLNIVNFSKTKSLYREGLAPVVCSRHRPQWNRIPSNQVLYY
RAPRGPGNRMAYVMSFLFQFDCSAEAPYYFAYSFPYTYTDLQRYL
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mRNA from alignment at H-paniculata_contig3139:8468..9116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3139.8479.1 ID=mRNA_H-paniculata_contig3139.8479.1|Name=mRNA_H-paniculata_contig3139.8479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=649bp|location=Sequence derived from alignment at H-paniculata_contig3139:8468..9116- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACGTTGGTGATTTCCCACAGGTTCTGTTGAATATCGTGAACTTCTC
GAAGACCAAAAGCTTGTACAGGGAAGGTCTGGCTCCGGTCGTGTGCTCTA
GACATCGACCACAATGGAATGTGAGAAATACCAGCCTGACTAGCAAACAC
TTACTCCGTGTTCCGAATGCAGCACGAATTACTTTGTTGAAATGTTCGCA
TTCCTCAAGCTGATTCAAAGCGTGGTTCGCGCAGAGACGATTACGCGGCA
TTTTTTGCCATTATGTAAGAGATGTATATTGTGGGAGAACGCACGGTGCT
ATTGCACACGTATACAATAAGAAAATATGCATTGGTGATTGTTGGTGACA
AATCACGCAGTTGATTGTAAAATCTCAAAGAAACGTTAACTGCGGTAGGA
GAGAGTTTCTGCTTGTTTCTCGCGATGCGGATAAAGAATCATTTATTGCA
TCGCTCGCTTACTTCTCTCTCCATTGCCTTGCAGCGGATTCCTTCTAATC
AGGTTCTCTATTACCGCGCGCCGCGAGGACCCGGAAACCGGATGGCATAT
GTGATGTCGTTTCTTTTTCAATTTGACTGCTCTGCTGAAGCCCCGTACTA
CTTCGCTTATTCATTTCCGTACACCTACACGGATCTGCAGCGGTACTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3139:8468..9116-

>mRNA_H-paniculata_contig3139.8479.1 ID=mRNA_H-paniculata_contig3139.8479.1|Name=mRNA_H-paniculata_contig3139.8479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig3139:8468..9116- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACGTTGGTGATTTCCCACAGGTTCTGTTGAATATCGTGAACTTCTC
GAAGACCAAAAGCTTGTACAGGGAAGGTCTGGCTCCGGTCGTGTGCTCTA
GACATCGACCACAATGGAATGTAGACGTTGGTGATTTCCCACAGGTTCTG
TTGAATATCGTGAACTTCTCGAAGACCAAAAGCTTGTACAGGGAAGGTCT
GGCTCCGGTCGTGTGCTCTAGACATCGACCACAATGGAATCGGATTCCTT
CTAATCAGGTTCTCTATTACCGCGCGCCGCGAGGACCCGGAAACCGGATG
GCATATGTGATGTCGTTTCTTTTTCAATTTGACTGCTCTGCTGAAGCCCC
GTACTACTTCGCTTATTCATTTCCGTACACCTACACGGATCTGCAGCGGT
ACTTGCGGATTCCTTCTAATCAGGTTCTCTATTACCGCGCGCCGCGAGGA
CCCGGAAACCGGATGGCATATGTGATGTCGTTTCTTTTTCAATTTGACTG
CTCTGCTGAAGCCCCGTACTACTTCGCTTATTCATTTCCGTACACCTACA
CGGATCTGCAGCGGTACTTG
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