mRNA_H-paniculata_contig31382.8476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31382.8476.1
Unique NamemRNA_H-paniculata_contig31382.8476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: UPI0003F08179 (neurogenic locus Notch protein-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08179)

HSP 1 Score: 55.1 bits (131), Expect = 2.180e-7
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   13 KSNVIVPFLLTDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSCQTST 162
            KS ++ P + TDPCSPNPC NGG C +  G G+ CTC   + G +C+TST
Sbjct:  161 KSPILSP-ISTDPCSPNPCLNGGVCDL-YGSGYSCTCDSAWVGANCETST 208          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: A0A820PC48_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820PC48_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-6
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 1
Query:   40 LTDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSCQT 156
            L D CSPNPCQNGG+C    G G+ C C  G  G +C+T
Sbjct:    2 LGDACSPNPCQNGGTCRTVNGNGYQCICAAGTTGTNCET 40          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: A0A1M3NHD5_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NHD5_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   52 CSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSCQTS 159
            C+PNPCQNGG+C  D  G H C C PGF G +C+T+
Sbjct:   96 CTPNPCQNGGTCDDDANG-HTCKCAPGFSGANCETN 130          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: A0A3B3SUX1_9TELE (EGF-like repeat and discoidin I-like domain-containing protein 3 n=5 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SUX1_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 4.940e-6
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 1
Query:   49 PCSPNPCQNGGSCVV------DIGGGHMCTCTPGFGGMSCQ 153
            PC PNPC NGG CV+      D   G++CTC PGF G+ CQ
Sbjct:   58 PCQPNPCHNGGVCVISETYRGDTFIGYVCTCPPGFNGIHCQ 98          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: A0A821P194_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821P194_9BILA)

HSP 1 Score: 49.3 bits (116), Expect = 5.240e-6
Identity = 20/38 (52.63%), Postives = 21/38 (55.26%), Query Frame = 1
Query:   40 LTDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSCQ 153
            L DPCS NPC NGG C     GG  C C  GF G  C+
Sbjct:    5 LGDPCSQNPCMNGGQCYPTNAGGFSCQCPSGFNGQQCE 42          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: A0A8B7ZG15_ACAPL (uncharacterized protein LOC110986398 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZG15_ACAPL)

HSP 1 Score: 50.8 bits (120), Expect = 6.820e-6
Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = 1
Query:   34 FLLTDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSC 150
            F   DPCSPNPCQNGG+C    G   +C C PGF G +C
Sbjct:   93 FECHDPCSPNPCQNGGTC-SQYGESFLCQCAPGFEGNNC 130          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: K1PV07_CRAGI (Peptidase inhibitor 16 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1PV07_CRAGI)

HSP 1 Score: 50.4 bits (119), Expect = 9.250e-6
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:   43 TDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSCQT 156
            T+PCS NPC+NGGSC VD G   +C CT G+ G +C+T
Sbjct:  263 TNPCSTNPCKNGGSCSVD-GDKAVCQCTSGWSGSTCET 299          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: A0A0L0FFK1_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FFK1_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 9.350e-6
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 1
Query:   40 LTDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSC 150
            + DPCSPNPC+NGGSC  D G G  C C  GF G +C
Sbjct:  244 VVDPCSPNPCENGGSCSPD-GSGFSCDCGDGFEGPTC 279          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: UPI001939E87E (uncharacterized protein LOC120337321 isoform X1 n=6 Tax=Styela clava TaxID=7725 RepID=UPI001939E87E)

HSP 1 Score: 50.4 bits (119), Expect = 9.420e-6
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   37 LLTDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSCQTS 159
            + TDPCS NPC NGG+C++ + GG+ C C  G+ G  CQ +
Sbjct:  669 IATDPCSKNPCGNGGNCLI-VPGGYQCQCRVGYTGNKCQNA 708          
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Match: UPI00138FF519 (uncharacterized protein LOC5520382 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FF519)

HSP 1 Score: 50.4 bits (119), Expect = 9.440e-6
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 1
Query:   46 DPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSCQT 156
            +PC+ NPCQNGG+C+      + CTCTPG  G +C+T
Sbjct: 4822 EPCTKNPCQNGGTCIPSGPSVYTCTCTPGVTGANCET 4858          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31382.8476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003F081792.180e-752.00neurogenic locus Notch protein-like n=1 Tax=Saccog... [more]
A0A820PC48_9BILA1.270e-653.85Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
A0A1M3NHD5_9DELT1.420e-658.33Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A3B3SUX1_9TELE4.940e-653.66EGF-like repeat and discoidin I-like domain-contai... [more]
A0A821P194_9BILA5.240e-652.63Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]
A0A8B7ZG15_ACAPL6.820e-656.41uncharacterized protein LOC110986398 n=1 Tax=Acant... [more]
K1PV07_CRAGI9.250e-657.89Peptidase inhibitor 16 n=3 Tax=Crassostrea gigas T... [more]
A0A0L0FFK1_9EUKA9.350e-659.46Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
UPI001939E87E9.420e-648.78uncharacterized protein LOC120337321 isoform X1 n=... [more]
UPI00138FF5199.440e-651.35uncharacterized protein LOC5520382 n=1 Tax=Nematos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31382contigH-paniculata_contig31382:659..823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.1334345-CDS-H-paniculata_contig31382:658..8231622929967.1334345-CDS-H-paniculata_contig31382:658..823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31382 659..823 +
1691481090.444463-CDS-H-paniculata_contig31382:658..8231691481090.444463-CDS-H-paniculata_contig31382:658..823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31382 659..823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31382.8476.1prot_H-paniculata_contig31382.8476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31382 659..823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31382.8476.1

>prot_H-paniculata_contig31382.8476.1 ID=prot_H-paniculata_contig31382.8476.1|Name=mRNA_H-paniculata_contig31382.8476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
SHLHKSNVIVPFLLTDPCSPNPCQNGGSCVVDIGGGHMCTCTPGFGGMSC
QTSTQ
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mRNA from alignment at H-paniculata_contig31382:659..823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31382.8476.1 ID=mRNA_H-paniculata_contig31382.8476.1|Name=mRNA_H-paniculata_contig31382.8476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig31382:659..823+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACATCTCCACAAGTCGAACGTGATTGTCCCTTTCCTACTTACAGATCC TTGCAGCCCGAATCCTTGCCAAAATGGAGGTAGCTGTGTCGTGGACATTG GCGGGGGGCATATGTGCACATGCACTCCTGGCTTCGGAGGAATGTCCTGC CAAACCTCCACCCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig31382:659..823+

>mRNA_H-paniculata_contig31382.8476.1 ID=mRNA_H-paniculata_contig31382.8476.1|Name=mRNA_H-paniculata_contig31382.8476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig31382:659..823+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACATCTCCACAAGTCGAACGTGATTGTCCCTTTCCTACTTACAGATCC
TTGCAGCCCGAATCCTTGCCAAAATGGAGGTAGCTGTGTCGTGGACATTG
GCGGGGGGCATATGTGCACATGCACTCCTGGCTTCGGAGGAATGTCCTGC
CAAACCTCCACCCAATCACATCTCCACAAGTCGAACGTGATTGTCCCTTT
CCTACTTACAGATCCTTGCAGCCCGAATCCTTGCCAAAATGGAGGTAGCT
GTGTCGTGGACATTGGCGGGGGGCATATGTGCACATGCACTCCTGGCTTC
GGAGGAATGTCCTGCCAAACCTCCACCCAA
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