mRNA_H-paniculata_contig3138.8473.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3138.8473.1
Unique NamemRNA_H-paniculata_contig3138.8473.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3138.8473.1 vs. uniprot
Match: D7FVR7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR7_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.930e-7
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    4 QVENILNRASRRGQFQTLVYHSAIDPKQVISS 99
            QVEN+L+RASR GQF+TLVYHSAIDPKQ  S+
Sbjct:  489 QVENMLSRASRGGQFETLVYHSAIDPKQAASN 520
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3138.8473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVR7_ECTSI2.930e-778.13DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3138contigH-paniculata_contig3138:518..619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.818559-CDS-H-paniculata_contig3138:517..6191622929966.818559-CDS-H-paniculata_contig3138:517..619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3138 518..619 -
1691481090.348205-CDS-H-paniculata_contig3138:517..6191691481090.348205-CDS-H-paniculata_contig3138:517..619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3138 518..619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3138.8473.1prot_H-paniculata_contig3138.8473.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3138 518..619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3138.8473.1

>prot_H-paniculata_contig3138.8473.1 ID=prot_H-paniculata_contig3138.8473.1|Name=mRNA_H-paniculata_contig3138.8473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
MQVENILNRASRRGQFQTLVYHSAIDPKQVISSF
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mRNA from alignment at H-paniculata_contig3138:518..619-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3138.8473.1 ID=mRNA_H-paniculata_contig3138.8473.1|Name=mRNA_H-paniculata_contig3138.8473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at H-paniculata_contig3138:518..619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTGGAGAATATTTTGAATCGTGCCAGCAGGAGAGGTCAGTTCCA
GACCCTCGTATATCACTCGGCAATCGACCCGAAGCAGGTGATTTCGTCCT
TT
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Coding sequence (CDS) from alignment at H-paniculata_contig3138:518..619-

>mRNA_H-paniculata_contig3138.8473.1 ID=mRNA_H-paniculata_contig3138.8473.1|Name=mRNA_H-paniculata_contig3138.8473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig3138:518..619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTGGAGAATATTTTGAATCGTGCCAGCAGGAGAGGTCAGTTCCA
GACCCTCGTATATCACTCGGCAATCGACCCGAAGCAGGTGATTTCGTCCT
TTATGCAGGTGGAGAATATTTTGAATCGTGCCAGCAGGAGAGGTCAGTTC
CAGACCCTCGTATATCACTCGGCAATCGACCCGAAGCAGGTGATTTCGTC
CTTT
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