mRNA_H-paniculata_contig31370.8470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31370.8470.1
Unique NamemRNA_H-paniculata_contig31370.8470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31370.8470.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.050e-20
Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   28 SATTNIVAQRAWKQANQALWSVLLLTTSGSANNVVKRFKGKRPDDGMGDGQTAWNALVNKYNSHTKDARRECHEKLVNTRMKPGQDSDEFLFVLDECRQTLENMGQTVHDERYEDIILQAFPADYERVR 414
            SAT   VA+  W++AN   +S++   T GSA+  VK F G + + G  DG  AW  L + ++  TK+ARR C  KL +T MK G+D  +FL  +D+ R  LE+MG+ + DE YED++L+A   +Y  +R
Sbjct:   15 SATPAEVAK--WQRANFQQFSIIFFGTEGSAHITVKPFTGTKGNPG--DGAGAWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIR 139
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BLAST of mRNA_H-paniculata_contig31370.8470.1 vs. uniprot
Match: A0A6H5KRA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.640e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:   40 NIVAQRAWKQANQALWSVLLLTTSGSANNVVKRFKGKRPDDGMGDGQTAWNALVNKYNSHTKDARRECHEKLVNTRMKPGQDSDEFLFVLDECRQTLENMGQ 345
            N  AQ  W  AN  L+S+L   TSGSA   V+  +G   +  MG+G  AWNAL +++++ T++ARR CH +L N R  PG D  +F     + +  L  +G+
Sbjct:  142 NSTAQADWDNANGRLYSLLFFVTSGSAQLTVRAHEGTAANT-MGNGAEAWNALNDRFDAQTQEARRACHNELFNLRHLPGGDPIDFFTKSWDLKLRLRGLGE 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31370.8470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.050e-2041.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRA6_9PHAE1.640e-1238.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31370contigH-paniculata_contig31370:2342..2755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.4228258-CDS-H-paniculata_contig31370:2341..27551622929966.4228258-CDS-H-paniculata_contig31370:2341..2755Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31370 2342..2755 -
1691481090.2178001-CDS-H-paniculata_contig31370:2341..27551691481090.2178001-CDS-H-paniculata_contig31370:2341..2755Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31370 2342..2755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31370.8470.1prot_H-paniculata_contig31370.8470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31370 2342..2755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31370.8470.1

>prot_H-paniculata_contig31370.8470.1 ID=prot_H-paniculata_contig31370.8470.1|Name=mRNA_H-paniculata_contig31370.8470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
PSSSLGTDESATTNIVAQRAWKQANQALWSVLLLTTSGSANNVVKRFKGK
RPDDGMGDGQTAWNALVNKYNSHTKDARRECHEKLVNTRMKPGQDSDEFL
FVLDECRQTLENMGQTVHDERYEDIILQAFPADYERVR
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mRNA from alignment at H-paniculata_contig31370:2342..2755-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31370.8470.1 ID=mRNA_H-paniculata_contig31370.8470.1|Name=mRNA_H-paniculata_contig31370.8470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at H-paniculata_contig31370:2342..2755- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCGTCTTCCTTGGGCACCGATGAATCTGCGACAACCAACATCGTTGC
CCAACGGGCGTGGAAACAAGCCAATCAAGCACTCTGGAGCGTGCTACTTC
TTACAACGTCTGGTTCCGCCAACAATGTCGTCAAGAGATTCAAAGGCAAG
CGGCCCGACGACGGAATGGGAGACGGACAGACCGCTTGGAATGCCCTGGT
GAATAAGTATAACAGCCACACAAAAGACGCTAGGAGGGAATGCCACGAAA
AGCTGGTCAATACGAGGATGAAGCCCGGCCAGGATTCCGACGAATTTTTA
TTCGTCTTGGACGAATGCCGTCAAACTCTCGAAAACATGGGGCAGACAGT
GCACGACGAGCGCTACGAGGACATTATTCTCCAAGCTTTTCCTGCCGATT
ATGAAAGGGTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31370:2342..2755-

>mRNA_H-paniculata_contig31370.8470.1 ID=mRNA_H-paniculata_contig31370.8470.1|Name=mRNA_H-paniculata_contig31370.8470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig31370:2342..2755- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCGTCTTCCTTGGGCACCGATGAATCTGCGACAACCAACATCGTTGC
CCAACGGGCGTGGAAACAAGCCAATCAAGCACTCTGGAGCGTGCTACTTC
TTACAACGTCTGGTTCCGCCAACAATGTCGTCAAGAGATTCAAAGGCAAG
CGGCCCGACGACGGAATGGGAGACGGACAGACCGCTTGGAATGCCCTGGT
GAATAAGTATAACAGCCACACAAAAGACGCTAGGAGGGAATGCCACGAAA
AGCTGGTCAATACGAGGATGAAGCCCGGCCAGGATTCCGACGAATTTTTA
TTCGTCTTGGACGAATGCCGTCAAACTCTCGAAAACATGGGGCAGACAGT
GCACGACGAGCGCTACGAGGACATTATTCTCCAAGCTTTTCCTGCCGATT
ATGAAAGGGTGAGACCGTCGTCTTCCTTGGGCACCGATGAATCTGCGACA
ACCAACATCGTTGCCCAACGGGCGTGGAAACAAGCCAATCAAGCACTCTG
GAGCGTGCTACTTCTTACAACGTCTGGTTCCGCCAACAATGTCGTCAAGA
GATTCAAAGGCAAGCGGCCCGACGACGGAATGGGAGACGGACAGACCGCT
TGGAATGCCCTGGTGAATAAGTATAACAGCCACACAAAAGACGCTAGGAG
GGAATGCCACGAAAAGCTGGTCAATACGAGGATGAAGCCCGGCCAGGATT
CCGACGAATTTTTATTCGTCTTGGACGAATGCCGTCAAACTCTCGAAAAC
ATGGGGCAGACAGTGCACGACGAGCGCTACGAGGACATTATTCTCCAAGC
TTTTCCTGCCGATTATGAAAGGGTGAGA
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