prot_H-paniculata_contig3134.8464.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3134.8464.1
Unique Nameprot_H-paniculata_contig3134.8464.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length351
Homology
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: D8LJ02_ECTSI (Polyadenylate binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ02_ECTSI)

HSP 1 Score: 466 bits (1199), Expect = 2.660e-162
Identity = 261/350 (74.57%), Postives = 292/350 (83.43%), Query Frame = 0
Query:    1 MAEVASCTIYIKGVPSTTTEADVREACAQYGNITEVAIPEGKDFCFVEFAEETQAQAAAETGGFEVAGLHASAEMRKPRRGRRERATVPEGTSTSIYIPSLPDLADKESIRHVFTEVCEAQRVDLRQRQDQTRYAFVEFGSPENVKAILAAGSFTLDGQSLELEERTSVARVRSHRERNENGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEVEEAREGVRGRRVPPVVDNSVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTVEARKSTPTPRSEYSQGGRSRRYGGRRPRGGGMGGDRKRENY 350
            MAE+ASCTIYIKG+ +T TEADVR+AC+QYGNIT+VAIPEGKDFCFVEFAEE QAQAAAETGGF+V G HA+ EMRKPRRGRRERATVPEGTSTSIYIP LPD ADKE+IR++FT + EAQRVDLRQRQD +RYAFVEFG   +V+ I+A+G FTLD Q+LELEERTSVARVR+ R++NE G             XXXXXXXX      XXXXX     E R    GRRVPPV +NSVYIKGFP+TT+EDDIRAEFSQYGDI SVILRVKHIG++IRTWAFVEY +PE+V+PAIAGS+SLELGGVPCTVEARKSTPTPRSEY  GGR+RRYGGRRPRG    GDRKRE Y
Sbjct:    1 MAELASCTIYIKGIATTATEADVRDACSQYGNITDVAIPEGKDFCFVEFAEEAQAQAAAETGGFDVCGAHATVEMRKPRRGRRERATVPEGTSTSIYIPGLPDSADKEAIRNLFTGLFEAQRVDLRQRQDGSRYAFVEFGDCTHVQEIMASGPFTLDDQTLELEERTSVARVRAPRKQNEGGGEANGGGRTRNRGXXXXXXXXGEGGEYXXXXXXXXXXEGR----GRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDITSVILRVKHIGDDIRTWAFVEYGAPEMVEPAIAGSESLELGGVPCTVEARKSTPTPRSEYGGGGRNRRYGGRRPRG--DRGDRKREEY 344          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A7S1TZM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZM3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.910e-25
Identity = 98/340 (28.82%), Postives = 147/340 (43.24%), Query Frame = 0
Query:    2 AEVASCTIYIKGVPSTTTEADVREACAQYGNITEVAIPEGKDFCFVEFAEETQAQAAAETGGFEVAGLHASAEMR-----KPRRGRRERATVPEG-TSTSIYIPSLPDLADKESIRHVFTEVCEAQRVDLRQRQDQTRYAFVEFGSPENVKAILAAG-SFTLDGQSLELEERTSVARVRSHRERNENGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEVEEAREGVRGRRVPPVVDNSVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNE-------IRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTVEARKSTPTPRSEYSQGGR 327
            AE    TI++  +   TT   ++EAC Q+G +T V     + F +V+FAE +  +AA   G   V G  A+   +     +P  G      VP+   +TSI +  +     +E I   F       +V++R R+    YAFV+F + + +KA LA+  S  + G+++ +EER                                                       R  V GR   PVV+NS+YI+ F + T +D IR  F ++G+I S+I RVK   +E        RTWAFVEY + E    A+  + +  L GV  TVE R S P   S  +  GR
Sbjct:   22 AEGPILTIFVAKMSRDTTPEALKEACGQFGEVTGVTKRVPRSFGYVDFAERSSVEAAVAAGTVTVDGEEATIAEKDLTKARPPPGATAAPAVPKDYVNTSIIVRDIDPETKREDITEFFGTFGSVTKVEVR-RRPYVVYAFVKFETADEMKAALASSDSLEIGGKAVTIEER----------------------------------------------------RPPRAAVPGRE-GPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQPIALSRRAGRGR 307          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A7S1TZR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZR2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.500e-18
Identity = 85/300 (28.33%), Postives = 127/300 (42.33%), Query Frame = 0
Query:   42 KDFCFVEFAEETQAQAAAETGGFEVAGLHASAEMR-----KPRRGRRERATVPEG-TSTSIYIPSLPDLADKESIRHVFTEVCEAQRVDLRQRQDQTRYAFVEFGSPENVKAILAAG-SFTLDGQSLELEERTSVARVRSHRERNENGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEVEEAREGVRGRRVPPVVDNSVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNE-------IRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTVEARKSTPTPRSEYSQGGR 327
            + F +V+FAE +  +AA   G   V G  A+   +     +P  G      VP+   +TSI +  +     +E I   F       +V++R R+    YAFV+F + + +KA LA+  S  + G+++ +EER                                                       R  V GR   PVV+NS+YI+ F + T +D IR  F ++G+I S+I RVK   +E        RTWAFVEY + E    A+  + +  L GV  TVE R S P   S  +  GR
Sbjct:   55 RSFGYVDFAERSSVEAAVAAGTVTVDGEEATIAEKDLTKARPPPGATAAPAVPKDYVNTSIIVRDIDPETKREDITEFFGTFGSVTKVEVR-RRPYVVYAFVKFETADEMKAALASSDSLEIGGKAVTIEER----------------------------------------------------RPPRAAVPGRE-GPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQPIALSRRAGRGR 300          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A2G4F9K6_9BACT (RNA-binding protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4F9K6_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 4.180e-7
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 0
Query:  234 VDNSVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTVEARKSTPTPRSEYSQGGRSRRYGGRRPRGGGMG 342
            ++N +++   P   +E DIRA FSQ G++VSV + +       R +AFV  AS +  + AIA +++++  G P  V   +    PR E         +GG RPR GG G
Sbjct:    1 MENKLFVGNLPWAATESDIRAHFSQGGEVVSVEVMMDKFTGRPRGFAFVTMASAQAAQDAIAKTENIDFMGRPLKVNVAR----PREERPS------FGGDRPRSGGFG 99          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A072PTR8_9EURO (Uncharacterized protein n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072PTR8_9EURO)

HSP 1 Score: 62.8 bits (151), Expect = 5.170e-7
Identity = 71/306 (23.20%), Postives = 117/306 (38.24%), Query Frame = 0
Query:    8 TIYIKGVPSTTTEADVREACAQYGNITEVAIPEGKD-----FCFVEFAEETQAQAAAETGGFEVAGLHASAEMRKPRRGRRERATVPEGTSTSIYIPSLPDLADKESIRHVFTEVCEAQRVDLRQ----RQDQTRYAFVEFGSPENVKAILAAGSFTLDGQSLELEERTSVARVRSHRERNENGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEVEEAREGVRGRRVPPVVDNSVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGG 304
            T+Y+    +   E  +R     YG I  +  P  K      FC+VEF + ++AQAA E    ++ GL    ++  P    R  A    G + ++++  +P  A  + I   F    + +++ L Q    +      AFV + +PE+ KA LA    +  G+++ +    +VA         E G                                V ++E+ R              +V I   P+T +E  IRA   + G +  VIL+  H G      A +E+        A AG  S+EL G
Sbjct:  920 TLYVTNYIAAADETYIRNLMRPYGEIVSIRFPSLKKNKRRRFCYVEFKQRSEAQAATELDNRDIDGLEIVVKISDP---TRRHARTENGEARTLFVGHIPFKATSKDIETAFAVYGKLEQIKLPQDAKAKSRNRGIAFVTYVNPEDAKAALALDKTSFQGRNITV----NVAA--------EGGSRANRSVNSRSMSPSTQPDPHSTPMSKDLNADVVQLEDRRL------------RTVAISDVPDTVNESRIRAIAEKTGPVRKVILKTNHQG------AVIEFEGV-----ADAGKASIELDG 1187          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A388PF75_9BACT (31 kDa ribonucleoprotein, chloroplastic n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A388PF75_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 7.080e-7
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  234 VDNSVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTVEARKSTPTPRSEYSQGGRSRRYGGRRPRGGGMGG 343
            ++N +++   P   +E DIRA FSQ G++VSV + +       R +AFV  A+ +  + AIA +++++  G P  V   +    PR E         +GG RPR GG GG
Sbjct:   50 MENKLFVGNLPWAATESDIRAHFSQGGEVVSVEVMMDKFTGRPRGFAFVTMANAQAAQDAIAKTENIDFMGRPLKVNVAR----PREERPS------FGGDRPRSGGFGG 149          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A3N5LCG7_9BACT (RNA-binding protein n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A3N5LCG7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.720e-6
Identity = 33/98 (33.67%), Postives = 47/98 (47.96%), Query Frame = 0
Query:  237 SVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTVEARKSTPTPRSEYSQGGRSRRYGGR 334
            ++Y+   P   +E+ +R EF QYG++ SV L      N ++ + FVE       + AI   D   L G P TV   K    P++E S    SRRY  R
Sbjct:    2 NIYVGNIPREATENAVREEFEQYGEVSSVSLIKDKYTNMLKGFGFVEMPKTAEAQKAIENLDGSMLNGRPLTVNPAK----PKTENSNNNSSRRYNSR 95          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A0D1YMB2_9EURO (Uncharacterized protein n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1YMB2_9EURO)

HSP 1 Score: 60.1 bits (144), Expect = 3.790e-6
Identity = 69/310 (22.26%), Postives = 123/310 (39.68%), Query Frame = 0
Query:    8 TIYIKGVPSTTTEADVREACAQYGNITEVAIP-----EGKDFCFVEFAEETQAQAAAETGGFEVAGLHASAEMRKPRRGRRERATVPEGTSTSIYIPSLPDLADKESIRHVFTEVCEAQRV----DLRQRQDQTRYAFVEFGSPENVKAILAAGSFTLDGQSLELEERTSVARVRSHRERNENGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEVEEAREGVRGRRVPPVVDN----SVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGG 304
            T+Y+   P+   E  +R+   +YG I  V  P     + + FC+VEF E   AQAA E    E+ GL    ++  P   R+ RA   +  S  I++  LP  A  + I  +F++  + + V    D + +      AF+ + + E  +A LA       G+ + ++  T  +   ++  +N +G                                V+         + +R P  +++    +V +   P+T +E  I+A     G +  V+L+  H G      A +E+      K   AG   +EL G
Sbjct:  925 TLYVTNYPAVADETYIRDLMGKYGEIINVRFPSLQRNKRRRFCYVEFKEPVDAQAATELDNKEIQGLPLVVKISNPT-ARKPRAEDKD-ESRKIFVGHLPFKAKNDDIEKLFSQYGKLENVRVPPDAKNQSRNRGIAFLTYATSEQAQAALAMNEHEFMGRQITVQLNTEGS---NNARKNGSGHSRSPS--------------------------VQTDGGVDPRFKPQRDPAAIEDRKQRTVALSDVPDTVNESRIKAMAENIGPVRKVVLKTNHQG------AIIEFD-----KVPDAGRAMIELDG 1192          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A2A2RQ55_9BACT (RRM domain-containing protein n=5 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2A2RQ55_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-6
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = 0
Query:  234 VDNSVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTVEARKSTPTPRSEYSQGGRSRRYGGRRPRGGGMG 342
            ++N +++   P   +E DIRA FSQ G++VSV + +       R +AFV   + +  + AIA +++++  G P  V   +    PR E         +GG RPR GG G
Sbjct:    1 MENKLFVGNLPWAATESDIRAHFSQAGEVVSVEVMMDKFTGRPRGFAFVTMGNAQQAQDAIAKTENIDFMGRPLKVNVAR----PREERPS------FGGDRPRSGGFG 99          
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Match: A0A7C0WDH0_9BACT (RNA-binding protein n=3 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A7C0WDH0_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.050e-5
Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:  237 SVYIKGFPETTSEDDIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSLELGGVPCTV-EARKSTPTPRSEYSQGGRSRRYGGRR 335
            ++Y+       SE D++A F++YG+++S  +       + R + FVE  S E  + AIAG +  ELGG    V +AR   P  RS      RSRR  GRR
Sbjct:    2 NIYVGNLSRDISEQDLKARFAEYGEVLSCRIIKDRFSGQSRGFGFVEMPSQEEAEKAIAGLNGKELGGRSLVVNQARPRQPKRRSGNF---RSRRPRGRR 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3134.8464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LJ02_ECTSI2.660e-16274.57Polyadenylate binding protein n=2 Tax=Ectocarpus T... [more]
A0A7S1TZM3_9STRA9.910e-2528.82Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1TZR2_9STRA4.500e-1828.33Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2G4F9K6_9BACT4.180e-733.94RNA-binding protein n=1 Tax=Opitutae bacterium Tax... [more]
A0A072PTR8_9EURO5.170e-723.20Uncharacterized protein n=1 Tax=Exophiala aquamari... [more]
A0A388PF75_9BACT7.080e-733.6431 kDa ribonucleoprotein, chloroplastic n=1 Tax=Ve... [more]
A0A3N5LCG7_9BACT2.720e-633.67RNA-binding protein n=1 Tax=Ignavibacteriae bacter... [more]
A0A0D1YMB2_9EURO3.790e-622.26Uncharacterized protein n=1 Tax=Exophiala sideris ... [more]
A0A2A2RQ55_9BACT4.340e-632.11RRM domain-containing protein n=5 Tax=Verrucomicro... [more]
A0A7C0WDH0_9BACT1.050e-536.00RNA-binding protein n=3 Tax=unclassified Candidatu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..74
e-value: 1.1E-13
score: 61.5
coord: 95..164
e-value: 7.1E-4
score: 28.9
coord: 237..310
e-value: 3.5E-13
score: 59.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..62
e-value: 5.1E-11
score: 42.2
coord: 238..304
e-value: 5.7E-11
score: 42.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..78
score: 11.725
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 94..174
score: 10.616
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 236..314
score: 12.936
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 84..179
e-value: 2.7E-9
score: 39.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 233..349
e-value: 4.0E-17
score: 64.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..83
e-value: 1.8E-15
score: 58.9
IPR039539Ras GTPase-activating protein-binding proteinPANTHERPTHR10693RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEINcoord: 233..342
coord: 82..222
coord: 7..82
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 89..204
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..83
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 235..344

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3134contigH-paniculata_contig3134:3436..14608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3134.8464.1mRNA_H-paniculata_contig3134.8464.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3134 1692..14778 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3134.8464.1 ID=prot_H-paniculata_contig3134.8464.1|Name=mRNA_H-paniculata_contig3134.8464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=351bp
MAEVASCTIYIKGVPSTTTEADVREACAQYGNITEVAIPEGKDFCFVEFA
EETQAQAAAETGGFEVAGLHASAEMRKPRRGRRERATVPEGTSTSIYIPS
LPDLADKESIRHVFTEVCEAQRVDLRQRQDQTRYAFVEFGSPENVKAILA
AGSFTLDGQSLELEERTSVARVRSHRERNENGEVNGGGGGGRSRARGRRG
AGGGGGGGGGGGGGVEEVEEAREGVRGRRVPPVVDNSVYIKGFPETTSED
DIRAEFSQYGDIVSVILRVKHIGNEIRTWAFVEYASPEVVKPAIAGSDSL
ELGGVPCTVEARKSTPTPRSEYSQGGRSRRYGGRRPRGGGMGGDRKRENY
*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039539Ras_GTPase_bind_prot
IPR035979RBD_domain_sf