mRNA_H-paniculata_contig31336.8463.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31336.8463.1
Unique NamemRNA_H-paniculata_contig31336.8463.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A6H5KJ27_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ27_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.680e-11
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEV 111
            GV APLE FKTATKGWGVRA  TI++G YIC+YAGE+
Sbjct:  360 GVTAPLEAFKTATKGWGVRARGTIQEGQYICSYAGEM 396
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: D7G1M9_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M9_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.680e-11
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEV 111
            GV APLE FKTATKGWGVRA  TI++G YIC+YAGE+
Sbjct:  534 GVTAPLEAFKTATKGWGVRARGTIQEGQYICSYAGEM 570
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A1S4DNT3_TOBAC (histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S4DNT3_TOBAC)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEVRAD 120
            G++ PLE+FKT T+GWGVRA  +I  GT+IC YAGE+  D
Sbjct:  857 GIKIPLEIFKTDTRGWGVRAVTSISSGTFICEYAGEILED 896
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A1S4DQX0_TOBAC (histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4DQX0_TOBAC)

HSP 1 Score: 60.1 bits (144), Expect = 2.730e-9
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEVRAD 120
            G++ PLE+FKT T+GWGVRA  +I  GT+IC Y GE+  D
Sbjct:  845 GIKIPLEIFKTDTRGWGVRAVTSISSGTFICEYVGEILED 884
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A5K0YY98_9MAGN (Uncharacterized protein (Fragment) n=3 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0YY98_9MAGN)

HSP 1 Score: 58.5 bits (140), Expect = 9.400e-9
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEVRAD 120
            G+R PLEVFKT T+GWGVR+  +I  GT+IC Y GE+  D
Sbjct:  214 GMRYPLEVFKTETRGWGVRSLSSIASGTFICEYVGELLRD 253
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A1J6IBN7_NICAT (Histone-lysine n-methyltransferase, h3 lysine-9 specific suvh5 n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1J6IBN7_NICAT)

HSP 1 Score: 58.5 bits (140), Expect = 9.540e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEVRAD 120
            G++ PLE+FKT ++GWGVRA  +I  GT+IC YAGE+  D
Sbjct:  916 GIKIPLEIFKTNSRGWGVRALTSIPSGTFICEYAGELLED 955
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A3Q2UL69_CHICK (Uncharacterized protein n=4 Tax=Phasianidae TaxID=9005 RepID=A0A3Q2UL69_CHICK)

HSP 1 Score: 58.2 bits (139), Expect = 1.130e-8
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEV 111
            G++  LEVFKTA KGWGVRA + I +GT++C YAGEV
Sbjct:  115 GLQVRLEVFKTAKKGWGVRALEAIAEGTFVCEYAGEV 151
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: UPI00168D3C5A (histone-lysine N-methyltransferase SETMAR isoform X1 n=3 Tax=Pteropodinae TaxID=77225 RepID=UPI00168D3C5A)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEV 111
            G+RAPL+VF+TA KGWGVRA   + +G ++C YAGEV
Sbjct:  123 GLRAPLQVFRTAAKGWGVRALARVPRGRFVCQYAGEV 159
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A1U8GHF7_CAPAN (uncharacterized protein LOC107868389 n=4 Tax=Capsicum TaxID=4071 RepID=A0A1U8GHF7_CAPAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-8
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEVRAD 120
            G++ PLE+FKT T+GWGVRA   I  GT+IC YAG++  D
Sbjct:  877 GIKIPLEIFKTDTRGWGVRALTYISSGTFICEYAGQLLED 916
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BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Match: A0A3B4U5P5_SERDU (Uncharacterized protein n=2 Tax=Seriola TaxID=8160 RepID=A0A3B4U5P5_SERDU)

HSP 1 Score: 57.8 bits (138), Expect = 1.660e-8
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEVRAD 120
            G+RA L++F+T T GWGVRA Q I QGT+IC Y GE+  D
Sbjct:  170 GLRARLQLFRTQTMGWGVRAMQDIPQGTFICEYVGEIITD 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31336.8463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ27_9PHAE4.680e-1175.68SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1M9_ECTSI4.680e-1175.68SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1S4DNT3_TOBAC7.810e-1060.00histone-lysine N-methyltransferase, H3 lysine-9 sp... [more]
A0A1S4DQX0_TOBAC2.730e-957.50histone-lysine N-methyltransferase, H3 lysine-9 sp... [more]
A0A5K0YY98_9MAGN9.400e-960.00Uncharacterized protein (Fragment) n=3 Tax=Nymphae... [more]
A0A1J6IBN7_NICAT9.540e-957.50Histone-lysine n-methyltransferase, h3 lysine-9 sp... [more]
A0A3Q2UL69_CHICK1.130e-864.86Uncharacterized protein n=4 Tax=Phasianidae TaxID=... [more]
UPI00168D3C5A1.140e-862.16histone-lysine N-methyltransferase SETMAR isoform ... [more]
A0A1U8GHF7_CAPAN1.300e-857.50uncharacterized protein LOC107868389 n=4 Tax=Capsi... [more]
A0A3B4U5P5_SERDU1.660e-860.00Uncharacterized protein n=2 Tax=Seriola TaxID=8160... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31336contigH-paniculata_contig31336:849..992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7G1M9
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11420,ko:K11433
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04211,map00310,map04211
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929965.3841078-CDS-H-paniculata_contig31336:848..9921622929965.3841078-CDS-H-paniculata_contig31336:848..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31336 849..992 -
1691481089.6920834-CDS-H-paniculata_contig31336:848..9921691481089.6920834-CDS-H-paniculata_contig31336:848..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31336 849..992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31336.8463.1prot_H-paniculata_contig31336.8463.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31336 849..992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31336.8463.1

>prot_H-paniculata_contig31336.8463.1 ID=prot_H-paniculata_contig31336.8463.1|Name=mRNA_H-paniculata_contig31336.8463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
GVRAPLEVFKTATKGWGVRATQTIEQGTYICTYAGEVRADFCMIIHI*
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mRNA from alignment at H-paniculata_contig31336:849..992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31336.8463.1 ID=mRNA_H-paniculata_contig31336.8463.1|Name=mRNA_H-paniculata_contig31336.8463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig31336:849..992- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTGCGGGCCCCGCTTGAGGTGTTCAAGACAGCCACCAAAGGATGGGG
AGTACGCGCTACGCAGACGATAGAACAGGGCACCTACATCTGCACCTACG
CTGGGGAGGTGCGGGCTGATTTTTGCATGATCATTCATATTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31336:849..992-

>mRNA_H-paniculata_contig31336.8463.1 ID=mRNA_H-paniculata_contig31336.8463.1|Name=mRNA_H-paniculata_contig31336.8463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig31336:849..992- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTGCGGGCCCCGCTTGAGGTGTTCAAGACAGCCACCAAAGGATGGGG
AGTACGCGCTACGCAGACGATAGAACAGGGCACCTACATCTGCACCTACG
CTGGGGAGGTGCGGGCTGATTTTTGCATGATCATTCATATTTAGGGCGTG
CGGGCCCCGCTTGAGGTGTTCAAGACAGCCACCAAAGGATGGGGAGTACG
CGCTACGCAGACGATAGAACAGGGCACCTACATCTGCACCTACGCTGGGG
AGGTGCGGGCTGATTTTTGCATGATCATTCATATTTAG
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