mRNA_H-paniculata_contig11315.846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig11315.846.1
Unique Name	mRNA_H-paniculata_contig11315.846.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.390e-89
Identity = 194/377 (51.46%), Postives = 224/377 (59.42%), Query Frame = 1

Query:    1 ESEAMRLVEGILGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLLALPPPP-GSGAPSRNGMLGGKLHSCLTCGKMFVSDEFLQQHIVRNHAHWDGNWKTSNRESEEKKQTADCDDESSSFPSQLRLFVQTSSGKCLDMAVQSATTVAQLRGYINSAAGFAAASSSKRIVYSRGVHLHDDQTLSDCRIPTESQLVLIDTEATKLQVAEPLVPQGEKE---------VESAALKQMSTLMALVRQQMEWTMRSEESRRGQGIGAAEALEIRMREME 1101
            ++ A RLVEGIL RKSFYFQQRTGKLD+RAIGRVD+  VVK+VD+DTLQ HLEN+ FA V+EDDLRLYSD CFLNLF +SQLLLEYLL+VQDTLATSLE                           RALKRE+RQKRATIARYEQLLALP PP G   P  NG   G LHSCLTCGKMF + EFLQQHI R HA   G+   +  + EEK          +++P+QLRLFVQT                                                   L +C IP ESQLVLIDTE+T    AE     GE++          ESAA KQM+TL+ L+RQQMEW MRSE  RR + +G+AEALE RMR +E
Sbjct:   28 DASAARLVEGILRRKSFYFQQRTGKLDMRAIGRVDIASVVKDVDVDTLQAHLENITFASVSEDDLRLYSDQCFLNLFRLSQLLLEYLLSVQDTLATSLED--------------------------RALKREIRQKRATIARYEQLLALPAPPSGRDVPGGNG---GGLHSCLTCGKMFTTAEFLQQHIARKHARHAGSSADTKVDQEEK----------TAYPTQLRLFVQT---------------------------------------------------LRECSIPPESQLVLIDTESTV--EAENKRTAGEEDNGKAAAVAAQESAAAKQMATLVDLMRQQMEWNMRSESGRREKDLGSAEALETRMRGIE 312

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A024UCD6_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCD6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.490e-28
Identity = 79/189 (41.80%), Postives = 112/189 (59.26%), Query Frame = 1

Query:   34 LGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLL------ALPPPPGSGAPSRNGMLGGKLHSCLTCGKMFVSDEFLQQHIVRNHAH 582
            L  +SF F+QR GKLD RAI ++D++RVV+E DIDT+Q  LEN+ F+D+T  D   YSD  FL LF I+QL +EYLLNVQ++L    E L ++   I+        E      + R LK+E++QK+ TI+ YE +L       +PP  GS  P+ +    G +  C+ C K F+S E+L +H    H H
Sbjct:   79 LPARSFSFRQRRGKLDTRAIAQIDLNRVVRETDIDTIQNQLENLAFSDITLQDFNQYSDEYFLKLFQIAQLTVEYLLNVQESLVVHAEELESQCDQIQHECAVLAEENESVDAELRHLKQEIKQKQNTISTYELMLLTRQHQTMPPSQGSTLPTTSP--SGPVE-CILCNKRFLSTEYLLKHQRNKHVH 264

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: W4FDC5_9STRA (C2H2-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDC5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.840e-26
Identity = 79/193 (40.93%), Postives = 113/193 (58.55%), Query Frame = 1

Query:   34 LGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIR----LMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLL------ALPPPPGSGAPSRNGMLGGKLH--SCLTCGKMFVSDEFLQQHIVRNH 576
            L  +SF F+QR GKLD RAI ++D++RVV+E DIDT+Q  LEN+ F+D+T  D   YSD  FL LF I+QL +EYLLNVQ++L    E L ++   ++     + DE  +       + R LK+E++QK+ TI+ YE +L      A P PP    PS+  +    L    C+ C K F+S E+L +H    H
Sbjct:   75 LPARSFSFRQRRGKLDTRAIAQIDLNRVVRETDIDTIQNQLENLAFSDITLQDFNQYSDEYFLKLFQIAQLTVEYLLNVQESLVMHTEELESQCEQVQHDCAALADENES----VDAELRLLKQEIKQKQNTISTYELMLLTRQHQAPPVPP----PSQGHLPPSTLPPVECILCNKKFLSTEYLIKHQRHKH 259

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A067D7L6_SAPPC (C2H2-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D7L6_SAPPC)

HSP 1 Score: 119 bits (297), Expect = 1.500e-25
Identity = 71/177 (40.11%), Postives = 106/177 (59.89%), Query Frame = 1

Query:   43 KSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLLALPPPPGSGAPSRNGMLGGKLHSCLTCGKMFVSDEFLQQHIVRN 573
            + F F+QR GKLD R I ++D+++VV+E DIDT+Q HLEN+ F+DVT  D+  YSD  FL LF ++QL +EYLLNVQ++L    E L  +   +        AE  +   + + LK+E++QK+ TIA +E +L L     +  PS +         C+ C K F+S E+L +H  +N
Sbjct:   85 RPFSFRQRQGKLDTRTIAQIDLNKVVRETDIDTIQNHLENLAFSDVTLQDVNQYSDEYFLKLFQVAQLTVEYLLNVQESLVLHTEDLETQCDHVAADCKTLEAENQKFDAEVKLLKQEIQQKQNTIATFEMML-LTQQRSASVPSTSPASAPV--DCVFCNKKFLSTEYLVKHQKKN 258

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A2R5FYZ7_9STRA (Zinc finger protein DZIP1L n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYZ7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.880e-25
Identity = 66/147 (44.90%), Postives = 99/147 (67.35%), Query Frame = 1

Query:    1 ESEAMRLVEGILGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLL 441
            ++E   + E +   K+FYFQQR GKLD+R I R+D+++VV++VDI+TLQ +LEN+ F+++ + DL   +D  FL LF ++QL +EYLLNVQ TL      L  + A I    D  +++L   SEQ ++L+RE++QKR T+  YE LL
Sbjct:   51 DAERGPVKENVRPEKNFYFQQRHGKLDLRGIARLDLEQVVEDVDIETLQTYLENLTFSELEDRDLHTCTDETFLKLFRVTQLTIEYLLNVQHTLYAYTSTLEGQLAHIHKEQDLAQSKLGMQSEQLQSLQRELKQKRRTLKTYEFLL 197

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A485LAG3_9STRA (Aste57867_18047 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAG3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.990e-25
Identity = 72/183 (39.34%), Postives = 108/183 (59.02%), Query Frame = 1

Query:   43 KSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLLALP-----PPPGSGAPSRNGMLGGKLHSCLTCGKMFVSDEFLQQHIVRNH 576
            +SF F+QR GK+D RAI ++D++RVV+E DIDT+Q  LEN+ F+DVT  D   YSD  FL LF ++QL +EYLL+VQ++L    + L  +   +R        E  +   +   LK++++QK+ TI+ YE +L        PPP S +P     +   L  C+ C K F+S E+L +H  + H
Sbjct:   63 RSFSFRQRRGKIDSRAIAQIDLNRVVRETDIDTIQCQLENLAFSDVTLQDFNQYSDEYFLKLFQVAQLTVEYLLSVQESLVAHSQDLERQCGEVRTECKMLADENDKIDSEVCLLKQDIKQKQNTISTYEMMLLTQQYKSTPPPRSTSPDTP--VSPAL--CILCNKKFLSTEYLLKHQKKKH 241

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A1V9YBD5_9STRA (C2H2-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBD5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.670e-25
Identity = 72/190 (37.89%), Postives = 109/190 (57.37%), Query Frame = 1

Query:    7 EAMRLVEGILGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLLALPPPPGSGAPSRNGMLGGKLHSCLTCGKMFVSDEFLQQHIVRNH 576
            +A R ++  L  + F F+QR GKLD R I ++D+++VV+E DIDT+Q HLEN+ F+DVT  D+  YSD  FL LF ++QL +EYLLNVQ++L    E L  +   +         E  +   +   LK+E++QK+ TIA +E +L       + AP +          C+ C K F+S E+L +H  + H
Sbjct:   67 QARRAIQ--LPPRPFSFRQRQGKLDTRTIAQIDLNKVVRETDIDTIQNHLENLAFSDVTLQDVNQYSDEYFLKLFQVAQLTVEYLLNVQESLVLHTEDLETQCDRVASECKTLEEENGKFDAEIALLKQEIKQKQNTIATFEMMLLSQQ---AKAPGQTPAPANAPVDCVFCNKKFLSTEYLLKHQKKKH 251

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A7S2S367_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S367_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.620e-25
Identity = 66/150 (44.00%), Postives = 105/150 (70.00%), Query Frame = 1

Query:    1 ESEAMRLVEGILGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTL---ATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLL 441
            + E + L   I+ +KSFYFQQR GK+D+RAI RVD++ +V++VDI+TLQ HLEN+ F+++ + D++ Y+D  F+ LF ++QL +EYLLNVQ TL   AT+LE  A      +++ ++   ++   +EQ  +L+RE++QK+ T+  YE LL
Sbjct:   77 DKENVGLNARIVPQKSFYFQQRHGKIDLRAISRVDLEALVEQVDIETLQTHLENITFSELDDADMKTYTDDNFMKLFRLTQLTVEYLLNVQHTLYSYATTLERQAQGIQNEQVVAEQ---KMDMQNEQLTSLRRELKQKKRTLKTYEFLL 223

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A7S3HAZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAZ7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 9.610e-25
Identity = 57/138 (41.30%), Postives = 91/138 (65.94%), Query Frame = 1

Query:   28 GILGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLL 441
            G+ G + F+FQQR G LD+R+I  ++++++V+EVD+D LQ+H+EN+ F ++ E+DLR  +D   + LF ISQL+LEYLL  QD L  +L  L+ K++  +  + + R EL    E  + L+ +V+ K+  IA  E LL
Sbjct:   55 GLFGSEGFFFQQRRGHLDLRSIAAINLEKLVREVDVDVLQIHIENITFCNLREEDLRYLTDPQIVKLFRISQLMLEYLLYSQDKLVDNLNHLSHKYSEKKRGLSKKRRELVELEESTKLLRNQVKAKKQNIATLEDLL 192

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BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Match: A0A329SK93_9STRA (C2H2-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SK93_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.680e-24
Identity = 76/207 (36.71%), Postives = 106/207 (51.21%), Query Frame = 1

Query:   34 LGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLENVVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAKHATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLLA--------------------------LPPPPGSGAPSRNGMLGGKLHSCLTCGKMFVSDEFLQQHIVRNH 576
            L  ++F F+QR GKLD RAI R+D++++    DI+T+Q HLEN+ F+DVT DD++ YSDA FL LF I+QL LEYL++VQD+L    E L  +                       +LKRE+RQK+ T+A  E +L                           L       A +  G +   + SC+ CGK FVS E+L +H  R H
Sbjct:  118 LPSRNFAFRQRAGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFSDVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSLVDHSEGLEKQXXXXXXXXXXXXXXXXXXXADIASLKREIRQKQRTMATLELMLLNVSASSRINNSAEENAAREANNLVDELLANQADSAATEEGSITNAV-SCVLCGKRFVSAEYLLRHQQRRH 323

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig11315.846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LJD7_ECTSI	1.390e-89	51.46	C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu...	[more]
A0A024UCD6_9STRA	1.490e-28	41.80	C2H2-type domain-containing protein n=1 Tax=Aphano...	[more]
W4FDC5_9STRA	1.840e-26	40.93	C2H2-type domain-containing protein n=3 Tax=Aphano...	[more]
A0A067D7L6_SAPPC	1.500e-25	40.11	C2H2-type domain-containing protein n=1 Tax=Saprol...	[more]
A0A2R5FYZ7_9STRA	1.880e-25	44.90	Zinc finger protein DZIP1L n=1 Tax=Hondaea ferment...	[more]
A0A485LAG3_9STRA	1.990e-25	39.34	Aste57867_18047 protein n=1 Tax=Aphanomyces stella...	[more]
A0A1V9YBD5_9STRA	3.670e-25	37.89	C2H2-type domain-containing protein n=1 Tax=Achlya...	[more]
A0A7S2S367_9STRA	8.620e-25	44.00	Hypothetical protein n=1 Tax=labyrinthulid quahog ...	[more]
A0A7S3HAZ7_9STRA	9.610e-25	41.30	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
A0A329SK93_9STRA	5.680e-24	36.71	C2H2-type domain-containing protein n=1 Tax=Phytop...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig11315	contig	H-paniculata_contig11315:4151..7894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	294.7
Seed ortholog evalue	6.1e-77
Seed eggNOG ortholog	2880.D8LJD7
Preferred name	DZIP1
KEGG ko	ko:K16470
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
EggNOG free text desc.	Zinc finger protein
EggNOG OGs	28IYV@1,2QRAI@2759
Ec32 ortholog description	C2H2 zinc finger protein
Ec32 ortholog	Ec-17_001930.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036
Exons	9
Model size	1101
Cds size	1089
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11315.846.1	prot_H-paniculata_contig11315.846.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig11315 4163..7894 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928839.6006572-UTR-H-paniculata_contig11315:4150..4162	1622928839.6006572-UTR-H-paniculata_contig11315:4150..4162	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11315 4151..4162 +
1691480639.9764369-UTR-H-paniculata_contig11315:4150..4162	1691480639.9764369-UTR-H-paniculata_contig11315:4150..4162	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11315 4151..4162 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig11315:4151..7894+
coding sequence from alignment at H-paniculata_contig11315:4151..7894+

protein sequence of mRNA_H-paniculata_contig11315.846.1

>prot_H-paniculata_contig11315.846.1 ID=prot_H-paniculata_contig11315.846.1|Name=mRNA_H-paniculata_contig11315.846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=363bp
MRLVEGILGRKSFYFQQRTGKLDIRAIGRVDVDRVVKEVDIDTLQVHLEN
VVFADVTEDDLRLYSDACFLNLFHISQLLLEYLLNVQDTLATSLEALAAK
HATIRLMVDEGRAELHRTSEQARALKREVRQKRATIARYEQLLALPPPPG
SGAPSRNGMLGGKLHSCLTCGKMFVSDEFLQQHIVRNHAHWDGNWKTSNR
ESEEKKQTADCDDESSSFPSQLRLFVQTSSGKCLDMAVQSATTVAQLRGY
INSAAGFAAASSSKRIVYSRGVHLHDDQTLSDCRIPTESQLVLIDTEATK
LQVAEPLVPQGEKEVESAALKQMSTLMALVRQQMEWTMRSEESRRGQGIG
AAEALEIRMREME

mRNA from alignment at H-paniculata_contig11315:4151..7894+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig11315.846.1 ID=mRNA_H-paniculata_contig11315.846.1|Name=mRNA_H-paniculata_contig11315.846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3744bp|location=Sequence derived from alignment at H-paniculata_contig11315:4151..7894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGCGAGGCCATGAGACTGGTGGAAGGTATCTTGGGGAGAAAATCTTT
CTACTTTCAACAGAGGACTGGAAAGCTCGACATACGAGCCATCGGCCGCG
TGGACGTGGATAGAGTTGTCAAGGAGGTTGACATCGACACCTTGCAGGTC
GGTACTTTTTCACCAGATGCGGGAGTGATGTCCACGTTCGTGTTCAAGTG
GCGGTATTTGTGTCTTTTATCTTTCTTGTCTGGAGGTAGGACATTTTAGG
ATATCGCCACATCGTGCATGGCAGAGCTCGTTGACGATCGCCATTGCTAG
AGGCCCTACATTATGTGCAGGTAGGTAACTGGCACCTTTAGGCAGAGGGG
AATATATACACAACAGACAACATGAACGAGGCCGCGCACATTCTAGACCG
TGATAATGAACGGCTTCTTGACATAGAATAGCCGATTATGGAAGTTTAGG
ACCAATTTCGTCTTTAGAATCCCCGACATCTCGAGATTAACAAATCCAAA
TTTATTCAAAGTAGGTACGTTCGACAGGTATTCAAGAGAACAGGTGCTCA
CGTCCCTCGGCCCCTTGCGATCAGAGATATTGCGGAGTCTTTGGCCGAAC
GATTTTCATCTCAAGGCGAAAGCGGTCCTAACTTCCATAATCGACTGTTA
TAGGTAGCGTGTAGTGAGGAAGGATTGCACAGACATTTAATCGGACATTG
TGTTACACTTGCGTTTGAAGACGAGACGAAATGTCGAGCATAGGTAGCGT
GCAGTGAGGAAAGGTTGCACAGACATTCAATCGGACATTGTTTTACACTT
GCTTTTGAAGACGAAACGAAATATCAAGCAAATTCGCCCGTCTGCCCCCG
TTCGTGCCCGTACGCAAACCCGCTGCGGTTTCCTCTCCAAAACGCCAGGT
TCATCTGGAAAACGTGGTATTTGCCGACGTTACTGAAGACGACCTGCGTC
TCTATTCAGACGCGTGCTTTCTCAACCTCTTCCACATAAGTCAGCTACTT
CTCGAGTACCTTTTAAATGTGCAGGATACCCTTGCCACCAGTCTTGAGGT
GGGATTTCAGCACAACCAATAACTTGCCCTGCGTACGAAAATTAAGTCAC
AGTTGGGATGACCTGTTCATTCCTCCCCTCCCAGCTCCTCAACCGTCCCT
TCTTGAACCACCGTAGCGCAGTCTACCTTCCTCGCCATGGATCCCCCCAC
GTGTTGTTAGATGTTTCGACGACTGCGCCCTTGCTTCACGTCGCGTGTCG
CACCTCAGGCGTTGGCTGCTAAGCACGCTACTATCCGACTTATGGTAGAC
GAAGGAAGGGCTGAGCTTCACCGAACGTCCGAACAGGTGATACGCTGTTG
ATCGATACTCGTGCCGCAACCACGCTCTCTGCATGTCGGAAGGACGGCTC
GTCCTCTCCGGACATAGTGCTTGGCCTGTGGTGCTTGATACTCATGGATG
GAATACACTTTATGCCGTGTATTTCTTGATTTCTGTAGGCACTCTCATAA
ATAACCACAGGGCAACTCTTGGATCAAACACATCCACATATGTATAATGT
CATGTTTCCCCCCTCTTGCAGGCACGCGCTCTGAAGAGGGAAGTTCGTCA
AAAACGAGCTACCATCGCCAGGTAGGCGATGACAAGGTCAACAGTATTAA
TGGTAGAAGTACACCCACGCGCTGTTATAACCAAGAGAACAAGTAGTATC
TTTGAGGTGTGCAAATGTAAGTTCGTCCTCGATGAACGCCGTTGTGACGA
ACGTTTACTTCGTTGTGTGCTGGCAGATACGAGCAGCTTCTGGCTCTCCC
TCCGCCACCGGGGAGTGGTGCGCCATCGCGCAATGGTATGCTCGGCGGGA
AATTGCACTCATGTCTAACCTGCGGCAAGATGTTCGTATCGGATGAGTTT
CTCCAGCAGCACATTGTCAGAAACCACGCTCACTGGGATGGGAACTGGAA
AACTTCAAATCGGTGAATATCAACTGCTGCGCAGCGACAACATCAGTAAT
TTTAGATCCTGTAGTCAAGCAGACAGTTCAGCACTACACCAGTCATTTGT
CGTGTTGTATTTTCTACATTACACACAACTGACAATCGTGGCTGCTTGAT
GCAAGTCCCACACTCTCTCCGGGCTCATTCTTCAAAGCATAGACTTGCCC
TCGACCAGCTTTATCATTCTCCTTCAATGCATTAGTAATATTCTGATTCA
CGATATATCTAAGGGTGCGCACTCTCATGCGGTCTCTCCACTTCACGTGC
TCAGTCGTTTTGGTCAGCTTTAAGCCTCGCTTATATGACATTCATCGGCG
CCTTGTGAAACCACGAAAACAGAGAATCGGAAGAAAAAAAACAGACGGCG
GATTGCGATGATGAAAGCAGCTCATTCCCGTCCCAGCTCAGACTCTTCGT
ACAGGTGGGTCAGGATTGGTGATTCGCCTTGTCGCTGCAACTTTCCTACC
ACCCAACCTCAGACATCTGGTATGTGAGAAATTCCGTGCATTTCGGAGAC
ATCCGTGCTTCTTCCCTACTTTCCGCTTGAGAGAGTGCACTCCACCCCAC
GTGTCTGTATTCCGGTAAGAAGTGCACTACTCTGATTTGACCTTTGTTTT
CTGAAAAGCTTTGATTGAATTATTATGTTCTCCTGGATGTCACATCACGG
TTGAGAGCGATGTACACCGAGAATGGGTCTATACGCCTGAAACCCGTGCT
CCTCCTCGTGCATTGTACATGTCTCCGGTGTAGACGAGCTCGGGCAAGTG
CCTCGATATGGCAGTGCAAAGCGCGACAACAGTTGCGCAGCTTCGGGGGT
ATATAAACTCAGCTGCTGGATTCGCCGCAGCCAGCTCTAGCAAGCGGATA
GTTTATAGGTAAGAGGTCGAACATTTTGCTTGAGGCGAAGACGGTTCCTG
CACCTTAGTTTATAGCTTGCTCGTTGAACATACTGCAAGAAAAATTGGGC
AGACGTAGAATTATTGACTGACGTTGGTCATAGTTTATTTTTTCAGAATC
TTGCCGTACACATAAATTTGCTGCAGCACGTAAGCTGTATCCATCCATAG
GTTCACGGTAGTAAACTCCCGCAAGAGCAACATGCGTGTGGTCGCGAAGT
AGATTAGGTTGGAACTGGAATTTTTTCTACCTTGAACGATCACCCTAACT
TGTTACATTCTAATTCTAATTCATCTGATTCGTTGGTCGCAAGCAGAGGA
GTGCATCTTCATGACGACCAGACTCTCAGCGACTGCCGCATACCCACGGA
GAGTCAGCTGGTGCTCATTGATACCGAGGCGAGTGCATGGAACGTGCCCA
TAGTCTTTCATATCATCCGGGTACACAAGTGTGACGAGCTAGAGGGTAAA
CAATAACGTCAAGGGAGTACCGATCAGCTGTTCCTACATCGTGTGAGGTC
GCTGCTGCCTAGTCGTGGGGATCCCATCCTTCACTAGTATTGTTCGATTC
TGTGGCCAAATACATATAATAATGACCTGATAAAACAACGATTCATCATG
CCGTGCCCGTCCATTGATTCGACAGGTGTCGGATGCAATTGGCGCCCAAG
CCAAACTGCAAGTGGCGGAACCATTAGTCCCCCAGGGAGAAAAGGAAGTA
GAGTCCGCTGCGCTCAAGCAGATGTCGACGCTAATGGCCCTTGTGCGCCA
GCAGATGGAATGGACGATGCGTAGCGAGGAGTCCCGAAGGGGGCAAGGAA
TAGGTGCTGCCGAAGCATTGGAGATACGAATGCGAGAAATGGAG

Coding sequence (CDS) from alignment at H-paniculata_contig11315:4151..7894+

>mRNA_H-paniculata_contig11315.846.1 ID=mRNA_H-paniculata_contig11315.846.1|Name=mRNA_H-paniculata_contig11315.846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2178bp|location=Sequence derived from alignment at H-paniculata_contig11315:4151..7894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACTGGTGGAAGGTATCTTGGGGAGAAAATCTTTCTACTTTCAACA
GAGGACTGGAAAGCTCGACATACGAGCCATCGGCCGCGTGGACGTGGATA
GAGTTGTCAAGGAGGTTGACATCGACACCTTGCAGATGAGACTGGTGGAA
GGTATCTTGGGGAGAAAATCTTTCTACTTTCAACAGAGGACTGGAAAGCT
CGACATACGAGCCATCGGCCGCGTGGACGTGGATAGAGTTGTCAAGGAGG
TTGACATCGACACCTTGCAGGTTCATCTGGAAAACGTGGTATTTGCCGAC
GTTACTGAAGACGACCTGCGTCTCTATTCAGACGCGTGCTTTCTCAACCT
CTTCCACATAAGTCAGCTACTTCTCGAGTACCTTTTAAATGTGCAGGATA
CCCTTGCCACCAGTCTTGAGGTTCATCTGGAAAACGTGGTATTTGCCGAC
GTTACTGAAGACGACCTGCGTCTCTATTCAGACGCGTGCTTTCTCAACCT
CTTCCACATAAGTCAGCTACTTCTCGAGTACCTTTTAAATGTGCAGGATA
CCCTTGCCACCAGTCTTGAGGCGTTGGCTGCTAAGCACGCTACTATCCGA
CTTATGGTAGACGAAGGAAGGGCTGAGCTTCACCGAACGTCCGAACAGGC
GTTGGCTGCTAAGCACGCTACTATCCGACTTATGGTAGACGAAGGAAGGG
CTGAGCTTCACCGAACGTCCGAACAGGCACGCGCTCTGAAGAGGGAAGTT
CGTCAAAAACGAGCTACCATCGCCAGGCACGCGCTCTGAAGAGGGAAGTT
CGTCAAAAACGAGCTACCATCGCCAGATACGAGCAGCTTCTGGCTCTCCC
TCCGCCACCGGGGAGTGGTGCGCCATCGCGCAATGGTATGCTCGGCGGGA
AATTGCACTCATGTCTAACCTGCGGCAAGATGTTCGTATCGGATGAGTTT
CTCCAGCAGCACATTGTCAGAAACCACGCTCACTGGGATGGGAACTGGAA
AACTTCAAATCGATACGAGCAGCTTCTGGCTCTCCCTCCGCCACCGGGGA
GTGGTGCGCCATCGCGCAATGGTATGCTCGGCGGGAAATTGCACTCATGT
CTAACCTGCGGCAAGATGTTCGTATCGGATGAGTTTCTCCAGCAGCACAT
TGTCAGAAACCACGCTCACTGGGATGGGAACTGGAAAACTTCAAATCGAG
AATCGGAAGAAAAAAAACAGACGGCGGATTGCGATGATGAAAGCAGCTCA
TTCCCGTCCCAGCTCAGACTCTTCGTACAGAGAATCGGAAGAAAAAAAAC
AGACGGCGGATTGCGATGATGAAAGCAGCTCATTCCCGTCCCAGCTCAGA
CTCTTCGTACAGACGAGCTCGGGCAAGTGCCTCGATATGGCAGTGCAAAG
CGCGACAACAGTTGCGCAGCTTCGGGGGTATATAAACTCAGCTGCTGGAT
TCGCCGCAGCCAGCTCTAGCAAGCGGATAGTTTATAGACGAGCTCGGGCA
AGTGCCTCGATATGGCAGTGCAAAGCGCGACAACAGTTGCGCAGCTTCGG
GGGTATATAAACTCAGCTGCTGGATTCGCCGCAGCCAGCTCTAGCAAGCG
GATAGTTTATAGCAGAGGAGTGCATCTTCATGACGACCAGACTCTCAGCG
ACTGCCGCATACCCACGGAGAGTCAGCTGGTGCTCATTGATACCGAGGCG
ACAGAGGAGTGCATCTTCATGACGACCAGACTCTCAGCGACTGCCGCATA
CCCACGGAGAGTCAGCTGGTGCTCATTGATACCGAGGCGACCAAACTGCA
AGTGGCGGAACCATTAGTCCCCCAGGGAGAAAAGGAAGTAGAGTCCGCTG
CGCTCAAGCAGATGTCGACGCTAATGGCCCTTGTGCGCCAGCAGATGGAA
TGGACGATGCGTAGCGAGGAGTCCCGAAGGGGGCAAGGAATAGGTGCTGC
CGAAGCATTGGAGATACGAATGCGAGAAATGGAGCCAAACTGCAAGTGGC
GGAACCATTAGTCCCCCAGGGAGAAAAGGAAGTAGAGTCCGCTGCGCTCA
AGCAGATGTCGACGCTAATGGCCCTTGTGCGCCAGCAGATGGAATGGACG
ATGCGTAGCGAGGAGTCCCGAAGGGGGCAAGGAATAGGTGCTGCCGAAGC
ATTGGAGATACGAATGCGAGAAATGGAG