mRNA_H-paniculata_contig31301.8458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31301.8458.1
Unique NamemRNA_H-paniculata_contig31301.8458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31301.8458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31301contigH-paniculata_contig31301:145..820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size381
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31301.8458.1prot_H-paniculata_contig31301.8458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31301 196..811 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.694945-UTR-H-paniculata_contig31301:144..1951622929964.694945-UTR-H-paniculata_contig31301:144..195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31301 145..195 +
1691481089.3475254-UTR-H-paniculata_contig31301:144..1951691481089.3475254-UTR-H-paniculata_contig31301:144..195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31301 145..195 +
1622929964.733515-UTR-H-paniculata_contig31301:811..8201622929964.733515-UTR-H-paniculata_contig31301:811..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31301 812..820 +
1691481089.3818917-UTR-H-paniculata_contig31301:811..8201691481089.3818917-UTR-H-paniculata_contig31301:811..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31301 812..820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.7068038-CDS-H-paniculata_contig31301:195..3301622929964.7068038-CDS-H-paniculata_contig31301:195..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31301 196..330 +
1691481089.3557568-CDS-H-paniculata_contig31301:195..3301691481089.3557568-CDS-H-paniculata_contig31301:195..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31301 196..330 +
1622929964.7210782-CDS-H-paniculata_contig31301:625..8111622929964.7210782-CDS-H-paniculata_contig31301:625..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31301 626..811 +
1691481089.373809-CDS-H-paniculata_contig31301:625..8111691481089.373809-CDS-H-paniculata_contig31301:625..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31301 626..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31301.8458.1

>prot_H-paniculata_contig31301.8458.1 ID=prot_H-paniculata_contig31301.8458.1|Name=mRNA_H-paniculata_contig31301.8458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MSFGSAWVRARWRGWLSGCSIVGVRTIDRGGAEWKRVVRSGNPGKHKHRC
MGDQLRHSVDEPSGKGEPRDPDECAGLVPARYATNGTGTRASARPYSARP
SASGNC*
back to top

mRNA from alignment at H-paniculata_contig31301:145..820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31301.8458.1 ID=mRNA_H-paniculata_contig31301.8458.1|Name=mRNA_H-paniculata_contig31301.8458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=676bp|location=Sequence derived from alignment at H-paniculata_contig31301:145..820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGGCCGGGAGGGCCGACGCGCGTCCCGAGTGCCGGCGAGCGTGTGAA
AATGTCGTTCGGCAGTGCATGGGTAAGGGCCCGCTGGAGGGGGTGGCTCA
GCGGGTGCTCGATTGTGGGCGTCAGGACGATCGACAGAGGAGGGGCGGAG
TGGAAGCGAGTAGTTCGCAGCGGCAACCCGGGGAAGGTGGGGGTGCGTTT
TGTTTTTGTTGCTTGGTCGGTGCATCAGTAGTCCGGAGAGACCAAACCAT
GCCTGTTTCTGCACTATTTTGCGTGGTTTTATATAGGCCACACCTGAAAC
CCTTGTGCTGGAGCTGTTTTTACCTACATTCGGCGGGAAAGGCGTGTTTT
CTCCTCCCTTAATCCTCCGCCCGTCTCTTTGCCTCCATTATGTATTTACA
CGTTTCAATATTAGTTTGTTTTTTTGTGTGTGTTTTTACAAGAGACGTTT
GAACAGTAATGTGATTTTTAATTGAAAACAGCACAAACATAGGTGCATGG
GAGACCAACTTCGGCATTCTGTTGACGAGCCTAGTGGGAAAGGAGAACCT
CGCGACCCTGACGAGTGCGCGGGCCTAGTACCAGCGAGATACGCCACCAA
CGGCACCGGCACCCGCGCCTCCGCAAGACCGTATTCTGCTCGACCGTCAG
CTTCGGGAAATTGTTGACACCCTCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31301:145..820+

>mRNA_H-paniculata_contig31301.8458.1 ID=mRNA_H-paniculata_contig31301.8458.1|Name=mRNA_H-paniculata_contig31301.8458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig31301:145..820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTCGGCAGTGCATGGGTAAGGGCCCGCTGGAGGGGGTGGCTCAG
CGGGTGCTCGATTGTGGGCGTCAGGACGATCGACAGAGGAGGGGCGGAGT
GGAAGCGAGTAGTTCGCAGCGGCAACCCGGGGAAGATGTCGTTCGGCAGT
GCATGGGTAAGGGCCCGCTGGAGGGGGTGGCTCAGCGGGTGCTCGATTGT
GGGCGTCAGGACGATCGACAGAGGAGGGGCGGAGTGGAAGCGAGTAGTTC
GCAGCGGCAACCCGGGGAAGCACAAACATAGGTGCATGGGAGACCAACTT
CGGCATTCTGTTGACGAGCCTAGTGGGAAAGGAGAACCTCGCGACCCTGA
CGAGTGCGCGGGCCTAGTACCAGCGAGATACGCCACCAACGGCACCGGCA
CCCGCGCCTCCGCAAGACCGTATTCTGCTCGACCGTCAGCTTCGGGAAAT
TGTTGACACAAACATAGGTGCATGGGAGACCAACTTCGGCATTCTGTTGA
CGAGCCTAGTGGGAAAGGAGAACCTCGCGACCCTGACGAGTGCGCGGGCC
TAGTACCAGCGAGATACGCCACCAACGGCACCGGCACCCGCGCCTCCGCA
AGACCGTATTCTGCTCGACCGTCAGCTTCGGGAAATTGTTGA
back to top