mRNA_H-paniculata_contig313.8455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig313.8455.1
Unique NamemRNA_H-paniculata_contig313.8455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig313.8455.1 vs. uniprot
Match: D8LQQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 5.500e-19
Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:   37 IVIRLKGKGQLKLEACTTVERDLWVSALEAAVHRRRAPSLAAEVEQQRWARREKAELHAQQRRSAQRRRENEASRSRMAEKYGLDPKKYA 306
            +VI+L+G  QL+LEA +  ERD WVSAL  AV R RAP L  EVE++RW RRE+A+    + R+A++R+ENE  R+RMAEKYGLDP+KYA
Sbjct:  203 LVIKLRGNEQLRLEARSAAERDRWVSALGEAVRRLRAPRLEDEVEEERWRRREEADAAXXRLRNARKRQENEGLRARMAEKYGLDPEKYA 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig313.8455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQQ8_ECTSI5.500e-1958.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig313contigH-paniculata_contig313:34074..38018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size476
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.1509192-CDS-H-paniculata_contig313:34073..341391622929964.1509192-CDS-H-paniculata_contig313:34073..34139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig313 34074..34139 +
1691481089.1394658-CDS-H-paniculata_contig313:34073..341391691481089.1394658-CDS-H-paniculata_contig313:34073..34139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig313 34074..34139 +
1622929964.1615078-CDS-H-paniculata_contig313:37610..380181622929964.1615078-CDS-H-paniculata_contig313:37610..38018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig313 37611..38018 +
1691481089.151291-CDS-H-paniculata_contig313:37610..380181691481089.151291-CDS-H-paniculata_contig313:37610..38018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig313 37611..38018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig313.8455.1prot_H-paniculata_contig313.8455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig313 34074..38018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig313.8455.1

>prot_H-paniculata_contig313.8455.1 ID=prot_H-paniculata_contig313.8455.1|Name=mRNA_H-paniculata_contig313.8455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
GGHDVGGGVPPVIVIRLKGKGQLKLEACTTVERDLWVSALEAAVHRRRAP
SLAAEVEQQRWARREKAELHAQQRRSAQRRRENEASRSRMAEKYGLDPKK
YASRPAPRYDDRNFREERGGSGGGSGGFGGVFSGLSGGGGGFGSGGGGDG
GVVTSGAG
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mRNA from alignment at H-paniculata_contig313:34074..38018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig313.8455.1 ID=mRNA_H-paniculata_contig313.8455.1|Name=mRNA_H-paniculata_contig313.8455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3945bp|location=Sequence derived from alignment at H-paniculata_contig313:34074..38018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGCATGACGTTGGAGGCGGTGTGCCACCTGTGATCGTTATTCGGCT
AAAAGGAAAAGGGCAGGTGAGCAGCAGAGTGGTCGTTAACGTGGAGCAAG
AGGTCCGGGCCTATAGAGAAAGCGATCCGGGTTTATGACCCCGACTGGTC
TTTAGAGGGCTGGTTTATGATCCCCACGCGTGAAGCAGTTGGAGAGCGAT
TTATGTTGGACCGAATGAAGTCAGTACTTACGTCTGTCAGTGGTCCGATG
GTTGGGGGCGCCTTCTGTACCATAAATGTAGAGGCTGGTCAATAGACGTG
TAAACGAAGTGGTCTGGGTGGCAAGGGTTTTGTTTGGTAAATGGAAGCCG
CTCGGGTGGTTCCTCAACAAGGCAGTCGTGTGACAGACGATTTTGAGCGC
CTTATTCTGGGGCCCCTCCTTATATCGATATAAGGCGGTTACTGCGCTGT
AGAGGAAGCCTATCTAGTGCGGTACCGCACTTTACAGGGCCTTACGCCAC
CCGTGTTACTGCAGATTTTTTTCCATGGTGGATATGTAGGGGACCCAAGG
CGAGAATGGCATTTAAATAGCAAAAGAACCTGGTTACAGCATTGATATTT
CTGGTAGCGCAAATAATTGGCATTGAGCCTGAGCATATGATGTCGTTAGA
CGTTGAGGTTTTTGTTGATAGCCTAAGTTTCTCAGGATACTTCGCCTCGA
AGCCCATCCGTCGTCACGTATGGTGCCAACACTGTACTGTACGTGTACCT
GGAACTGCGCCAAGAGGCCCCGATGTGTTTTAATCCCATACAGACATGGG
TTACCTGAGTTGCACTGGAACCAGTGAAAAACATGGTACTACTGTACTGT
ATACCCCCACGTCGAAAGCTCCACCACAGCCGCTGTGGTTCATGACAGGT
TGCTTCTACCTCACTGTACCCCACTATCCTTGCGCAAATTCCCTCATGTC
TGCCTGCTGCGTTGGTTTACGCTCGTGCTCAGCGATAAGCGATGTGCTGG
CCTTGCGCAAAAGTGTCCGGTTACCGCACTATTGAGAGACTGGTCCCTGT
ATAAAGCGGTGACCACACTATTATAGGTCGAAGGTGTGACAAGCTATTTT
GAACGTCGTATTACGGTACTTCTCTTTATTGAGTACCGCCTTATTGCGGG
ACCCCCACTGTATGTGTCTGATATGTGCATACATCGAATGAGGTGAGCAG
AATACAGTCTTGTCAGCGGGGCGTAACGGCTGACAAAAGCTTTGATTTTC
GTGCTAATAAAGGCAAGTAAGATGGCTGTCATCGGAGCTTTATTGGTTGT
GACAAAAGCAGTGATGCCATACACTAACAGCGAGCAACCATATGCGGAAA
GTTGACATTGTACGGTGTCCTTGTGTCTTCAATCGTTTTTATCCATGTAC
CTTCATGGTAAAGTTTTCGAAAAATGGATTTGGAGGAATTATTTTCCATG
AGAAGAAACGCGTTGTACTTTCGTATTGATGTAAACTGTTAGGGATGTGC
CTAATCCCGATTTGCAGCCAAATTCTGGCGACAGCGACCACATCGATAAA
GCGCCGAATAAAGTTTTTTTTTATCCTCTGATAGTATTTGTATTCAGTGT
TGGGTTTCTTCGAACTTATAAGCTGAACTACTCGATACAGGTTAGGAGTT
GGCTCGTGAGACTCGACACACACTGGGGTATGTCCTAATCTAGAGCTTGA
TCTTATGGGACGTTTATTCCGCGTTATAAGAATTCCAAACGGCCGAATAA
TTAGTGTGATTTTTTGCTACTTTCTCTGTGAAGATGCTTCTTCGTCATGA
CTTCATAAAGTCATAAAATAAACCCATAGCTGTGGTTTTCGCGCAGACGA
CGCAAAAAACCGCATCCCAATCAACGTCCTTGCTGAGGGTTGTATTTATT
GACAACATAGCCTATCAACACAAACAAGTACCTAGAATACTTGAATTTAA
AGTGGTCAATCAACACCAAAAACGCATCCAAAACTACTCGAATTTAGAGT
GCGGGAGAGGGCATCCTTTTCGATTGTAAATATTCTTCTCACATCTGGTC
GTTAGGGTTATGTTGGGTAGTCGTAGGGGCATATTCCGCGTGGCATAATG
CAATGGTTGTAGCTCGTTGTTGTAAACAGCATTCTTAGGGTCCCAAAGCA
CTAGAAACTTAGCTTGCTCGGCCTTTTTACCGTGTAGCTGTGAGCTGCAC
CAGTACATGATAAAAGGGGATAACGTGGTTAACACAAAACCAGCAGCAGC
AGCAGTAGTGCTTCTTCGCGCATCCTACGCCAAACCACCCTTCAATATTA
TCAGGTGACGTTGTGTCTCTCCATCGTTGTGTGTGTGTTTTTTTGGGGGG
TGACGTCAACTATATATTTTTTCTTATATGGCCCAAACCCTCTAAAAAGC
CGGCAAAATACGTGGTCGATGCGAAATTTTAGGACACAATTACCGCCTTA
TTCAGGGCAATTTAGGACTTAGGCGCACCCCTAACTGTAACCTGTGGCGA
TAGCAATAACATTTCTATTTTCCAGACTGTAGCACATCGACGCGTCACTA
ATTGTCGTCGTCTATAAAGTGATTTTTTTGCATTCATGAAGAGCGTTCAC
ACCCCAGACGACTAATATTACTGAGTAATTGACGATTTTATCGATTGTTT
CAGTTTTTCAGGCGATGGTTGATTGGTCAACTTGTTGCGCAACTTTTGCA
GCCGGTCATTACGCGCAGATTTAGTTGCGAGGTAGCTATCTCAGCTGGTA
GTATTTGTTCGAGTCGGTAGTATTTGTAGGCAACTAATTGTCGCAATAGC
TATCTTAACTGACAGTTGTTTGCAGGTAACTACTGGATAGTTTTCCTGTG
TATCAAAAGTTGGAATATAATACATATATAGGAGAGTGATGCATGCCACT
AGAATTGCGCTGAGACCTGCTGCCCTTGACTCGCTACTGCGCTTGCATCA
TTATTCAATCACTCTTCCCATCCACGTATTTTGTAAAAGCAAATCAACCA
CACTGTTGCATTGTGTGGCTTAACCTTGAGACGACAGCACTTGCACTCTG
TCTATCCTCTGCCCAAGCACTTACTAAATCAACATCGGCCAATTCTACAA
CCCTTGAAAACCCGTGGATTTCCAATCCCGGTTTCTCTTGTGCTGGTGCC
AAGTATTTCACCCACGTGTTATTAGTCACTCAAACGACACACGGAAGCAA
TGAGAACACCTCCTGGAAACATCAATCTTTGTAATCCAATCATCCAATAT
AAACTGTATCAAAATGCTCATCAAAAGGAGTAAGAGTACAAACAGAGGCC
ATCTCTGATGTATGATGCCGTCTGTCTGTCTGTACTGCGCTACAACATCC
TTCAACTTGCAATTAATTCTGCGGCTCAAACGGGCTGGAGACACTACATA
CTATTAGTACAGTCAATAGCACCCACACCCCTGTCCATCATCCTCTGCCC
CCGCAGACATTATCACACTAAACCGAACTAAACCAATTTTTTTCACAACC
AATAAAAAAACTCCAATTCTTTACTTTCATCCTGCAGCTTAAGCTAGAGG
CGTGCACGACGGTCGAGCGAGATCTGTGGGTCTCCGCCCTAGAGGCGGCC
GTCCACCGTCGCCGGGCCCCGTCGCTCGCCGCAGAGGTAGAGCAGCAGCG
GTGGGCGCGCAGGGAGAAGGCCGAGCTCCACGCGCAGCAGCGACGGAGCG
CTCAGCGACGCCGTGAGAACGAAGCGTCTCGCTCTCGAATGGCAGAAAAA
TACGGACTCGATCCGAAAAAGTATGCTTCGCGGCCCGCCCCGCGTTACGA
CGATCGGAACTTTCGGGAAGAAAGAGGCGGTAGCGGCGGCGGAAGTGGGG
GATTCGGTGGAGTATTTAGTGGTCTGAGCGGCGGAGGCGGGGGATTTGGT
AGTGGCGGTGGGGGTGATGGCGGCGTGGTTACGAGCGGTGCAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig313:34074..38018+

>mRNA_H-paniculata_contig313.8455.1 ID=mRNA_H-paniculata_contig313.8455.1|Name=mRNA_H-paniculata_contig313.8455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig313:34074..38018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGCATGACGTTGGAGGCGGTGTGCCACCTGTGATCGTTATTCGGCT
AAAAGGAAAAGGGCAGGGCGGGCATGACGTTGGAGGCGGTGTGCCACCTG
TGATCGTTATTCGGCTAAAAGGAAAAGGGCAGCTTAAGCTAGAGGCGTGC
ACGACGGTCGAGCGAGATCTGTGGGTCTCCGCCCTAGAGGCGGCCGTCCA
CCGTCGCCGGGCCCCGTCGCTCGCCGCAGAGGTAGAGCAGCAGCGGTGGG
CGCGCAGGGAGAAGGCCGAGCTCCACGCGCAGCAGCGACGGAGCGCTCAG
CGACGCCGTGAGAACGAAGCGTCTCGCTCTCGAATGGCAGAAAAATACGG
ACTCGATCCGAAAAAGTATGCTTCGCGGCCCGCCCCGCGTTACGACGATC
GGAACTTTCGGGAAGAAAGAGGCGGTAGCGGCGGCGGAAGTGGGGGATTC
GGTGGAGTATTTAGTGGTCTGAGCGGCGGAGGCGGGGGATTTGGTAGTGG
CGGTGGGGGTGATGGCGGCGTGGTTACGAGCGGTGCAGGCCTTAAGCTAG
AGGCGTGCACGACGGTCGAGCGAGATCTGTGGGTCTCCGCCCTAGAGGCG
GCCGTCCACCGTCGCCGGGCCCCGTCGCTCGCCGCAGAGGTAGAGCAGCA
GCGGTGGGCGCGCAGGGAGAAGGCCGAGCTCCACGCGCAGCAGCGACGGA
GCGCTCAGCGACGCCGTGAGAACGAAGCGTCTCGCTCTCGAATGGCAGAA
AAATACGGACTCGATCCGAAAAAGTATGCTTCGCGGCCCGCCCCGCGTTA
CGACGATCGGAACTTTCGGGAAGAAAGAGGCGGTAGCGGCGGCGGAAGTG
GGGGATTCGGTGGAGTATTTAGTGGTCTGAGCGGCGGAGGCGGGGGATTT
GGTAGTGGCGGTGGGGGTGATGGCGGCGTGGTTACGAGCGGTGCAGGC
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