mRNA_H-paniculata_contig3129.8452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3129.8452.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.350e-42 Identity = 108/304 (35.53%), Postives = 145/304 (47.70%), Query Frame = 2
Query: 296 MNTLPRSVLSKIGAFTNSNSLSGASNATLAAAPEMSYKIDIRKTARQVSSWLLPENMATTGLQC---------GSLPTGRVIAHITITNCGREIQP-WEDSVKLVVWRAIPTLKSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----------------------------------SAVKVAGQAIASGLWPALEVLEMRHCRGKASHFQELAHGLKTGRAPNLRVLNWDDQASNRTIPLDNLILSALAAGKCPRIERLSFTDNYRCPEARIDQLKCALRACPGLMELRMDCS 1075
++ LP VL +I +FT +SLSG TL E+ YK+D+ K A L + L+ G+L TGR + ITIT+ P E +++ VV +IPTL+ +T G + V AG+A+A+GLWPALEVL HCR A HF++LA GL++G AP LRVL WDDQ+S R + +D++IL+AL+ G+CP +E LSFT N CPE RI L+ L CP L ELRMDCS
Sbjct: 79 LDVLPGVVLREIVSFTTDSSLSGVCRTTLGGIRELHYKVDMAKVASAYFFGRLAAAYCSKTLELTDHMGIDASGALATGRAVVRITITHVHETQDPALEQAIRRVVQHSIPTLREITIRGYPTWTGRARPSGGSCSIQYPPCARSPSAGAPHGPDAPGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNRFCPEHRITYLEEMLWVCPRLRELRMDCS 382
BLAST of mRNA_H-paniculata_contig3129.8452.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI) HSP 1 Score: 150 bits (378), Expect = 4.880e-39 Identity = 88/204 (43.14%), Postives = 113/204 (55.39%), Query Frame = 2
Query: 488 GSLPTGRVIAHITITNCGREIQP-WEDSVKLVVWRAIPTLKSV------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSA-VKVAGQAIASGLWPALEVLEMRHCRGKASHFQELAHGLKTGRAPNLRVLNWDDQASNRTIPLDNLILSALAAGKCPRIERLSFTDNYRCPEARIDQLKCALRACPGLMELRMDCS 1075
G+L TGR + ITIT P E +++ VV +IPTL+ + T G+ V AG+A+A+GLWPALEVL HCR A HF++LA GL++G AP LRVL WDDQ+S R + +D++IL AL+ G+CP +ERLSFT N CPE RI L+ L CP L ELRMDCS
Sbjct: 32 GALATGRAVVRITITYVHHFQDPALEQAIRRVVQHSIPTLREIAIRGYPTWTGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCS 235
BLAST of mRNA_H-paniculata_contig3129.8452.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI) HSP 1 Score: 147 bits (371), Expect = 5.550e-38 Identity = 89/212 (41.98%), Postives = 110/212 (51.89%), Query Frame = 2
Query: 488 GSLPTGRVIAHITITNCGREI---------QPWEDSVKLVVWRAIPTLKSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GSAVKVAGQAIASGLWPALEVLEMRHCRGKASHFQELAHGLKTGRAPNLRVLNWDDQASNRTIPLDNLILSALAAGKCPRIERLSFTDNYRCPEARIDQLKCALRACPGLMELRMDCS 1075
G+L TGR I ITIT + E +V VV +IPTL+ +T + V AG+A+A+GLWPALEVL HCR A HF++LA GL++G AP LRVL WDDQ+S R +D++IL AL+ GKCP +ERLSFT N CPE I L+ AL CP L ELRMDCS
Sbjct: 28 GALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCS 239
BLAST of mRNA_H-paniculata_contig3129.8452.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI) HSP 1 Score: 144 bits (362), Expect = 5.710e-35 Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 2
Query: 725 SAVKVAGQAIASGLWPALEVLEMRHCRGKASHFQELAHGLKTGRAPNLRVLNWDDQASNRTIPLDNLILSALAAGKCPRIERLSFTDNYRCPEARIDQLKCALRACPGLMELRMDCS 1075
+ V AG+A+A+GLWPALEVL HCR A HF++LA GL++G AP LRVL WDDQ+S R + +D++IL AL+ G+CP +ERLSFT N CPE RI L+ L CP L ELRMDCS
Sbjct: 340 TGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCS 456
BLAST of mRNA_H-paniculata_contig3129.8452.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE) HSP 1 Score: 126 bits (317), Expect = 6.120e-31 Identity = 63/112 (56.25%), Postives = 77/112 (68.75%), Query Frame = 2
Query: 740 AGQAIASGLWPALEVLEMRHCRGKASHFQELAHGLKTGRAPNLRVLNWDDQASNRTIPLDNLILSALAAGKCPRIERLSFTDNYRCPEARIDQLKCALRACPGLMELRMDCS 1075
AG+A+A+GL PALEV HCR A HF++LA GL++G AP LRVL WDDQ++ R LD++IL AL+ G CP +ERLSFT CPE I L+ CP L ELRMDCS
Sbjct: 50 AGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTRFCPEHSIRYLEEMFWVCPRLRELRMDCS 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3129.8452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3129.8452.1 >prot_H-paniculata_contig3129.8452.1 ID=prot_H-paniculata_contig3129.8452.1|Name=mRNA_H-paniculata_contig3129.8452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp METVSNPPFCEPIANRPLRTVSNKRMHSNTMSNVDSDENSASVRSAVAMNback to top mRNA from alignment at H-paniculata_contig3129:5092..7795+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3129.8452.1 ID=mRNA_H-paniculata_contig3129.8452.1|Name=mRNA_H-paniculata_contig3129.8452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2704bp|location=Sequence derived from alignment at H-paniculata_contig3129:5092..7795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3129:5092..7795+ >mRNA_H-paniculata_contig3129.8452.1 ID=mRNA_H-paniculata_contig3129.8452.1|Name=mRNA_H-paniculata_contig3129.8452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at H-paniculata_contig3129:5092..7795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |