mRNA_H-paniculata_contig31263.8449.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31263.8449.1
Unique NamemRNA_H-paniculata_contig31263.8449.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A7S2WBD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBD4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.410e-34
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYE 243
            QDE G+AAYKT+ELDDSLGGA VQ+RE Q  ES LFLSYFK+TGIEYLPGGV SGFNK+E+DVYRTRLL  KGKR VR  E
Sbjct:   67 QDEAGVAAYKTIELDDSLGGAPVQHREVQNHESDLFLSYFKQTGIEYLPGGVDSGFNKVERDVYRTRLLHCKGKRAVRCTE 147          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A7S3MB93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB93_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.810e-33
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    4 DEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTG-IEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            DEQGIAAYKTVELDDSLGG  VQYRE QG ES LFLSYFK +G IEYLPGGV SGFNK+E+DVY TRLL +KGKR VR  EV
Sbjct:   26 DEQGIAAYKTVELDDSLGGGPVQYREVQGAESALFLSYFKASGGIEYLPGGVESGFNKVERDVYPTRLLHLKGKRTVRVSEV 107          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A7S2RPG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPG3_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.340e-33
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYE 243
            QDE G+AAYKT+ELDDSLGGA VQ+RE Q  ES LFLSYFK+TGIEYLPGGV SGFNK+E+DVYRTRLL  KGKR VR  E
Sbjct:   67 QDEAGVAAYKTIELDDSLGGAPVQHREVQNHESDLFLSYFKQTGIEYLPGGVDSGFNKVERDVYRTRLLHCKGKRAVRCTE 147          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A835YLA3_9STRA (Villin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.250e-31
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            QDE G+AAYKTVELDD+LGG AVQ+RE QG ES  F+SYFK  G+EYLPGGVASGF K+E D YRTRLL+VKGKRV R  EV
Sbjct:   65 QDEAGVAAYKTVELDDALGGGAVQFREVQGHESSQFMSYFKAKGVEYLPGGVASGFVKVEPDTYRTRLLRVKGKRVARISEV 146          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A024UB42_9STRA (HP domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UB42_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.680e-31
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            QDE G+AAYKTVELD++LGG  VQYRE QG ES LFLSYFK TG+EYLPGGV SGFNK+ +D Y T+LLQVKGKR VR  +V
Sbjct:   67 QDESGVAAYKTVELDEALGGGPVQYRECQGFESDLFLSYFKNTGVEYLPGGVDSGFNKVVRDQYETKLLQVKGKRTVRVNQV 148          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: W4FXZ0_9STRA (HP domain-containing protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXZ0_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.760e-31
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            QDE G+AAYKTVELD+SLGG  VQYRE QG ES LFLSYFK TGIEYL GGVASGFNK+ +D Y T+LLQVKGKR VR  +V
Sbjct:   67 QDESGVAAYKTVELDESLGGGPVQYRECQGFESDLFLSYFKSTGIEYLTGGVASGFNKVVRDQYDTKLLQVKGKRTVRVNQV 148          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A6G0XN38_9STRA (HP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XN38_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.060e-30
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            QDE G+AAYKTVELD+SLGG  VQYRE QG ES LFLSYFK TGIEYL GGV SGFNK+ +D Y T+LLQVKGKR VR  EV
Sbjct:   67 QDESGVAAYKTVELDESLGGGPVQYRECQGYESELFLSYFKNTGIEYLAGGVDSGFNKVVRDQYDTKLLQVKGKRTVRVNEV 148          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A662XFT4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XFT4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.120e-29
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1
Query:    4 DEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            DE G+AAYKTVELDD+L GA VQ+RE QG ES LFLSYFK+TG++YL GGVASGFN++++D Y TRL QVKGKR VR  +V
Sbjct:   72 DESGVAAYKTVELDDALSGAPVQHRECQGHESDLFLSYFKQTGLQYLEGGVASGFNEVKRDEYETRLYQVKGKRTVRVAQV 152          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A1V9Z593_9STRA (Villin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z593_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.270e-29
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            QDE G+AAYKTVELD+SLGG  +QYRE QG ES LF+SYFK TG+EYL GGVASGFN + +D Y T+L QVKGKR VR  EV
Sbjct:   67 QDESGVAAYKTVELDESLGGGPIQYRECQGHESELFMSYFKATGLEYLSGGVASGFNTVVRDQYDTKLFQVKGKRTVRVNEV 148          
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Match: A0A8K1CGN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGN4_PYTOL)

HSP 1 Score: 119 bits (298), Expect = 1.740e-29
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 DEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPGGVASGFNKMEKDVYRTRLLQVKGKRVVRSYEV 246
            DE G+AAYK+VELD+SLGG+ VQYRE QG ES LFLSYFK TG+EYL GGVASGFN + +D Y TRL QVKGKR VR  +V
Sbjct:   70 DESGVAAYKSVELDESLGGSPVQYRECQGHESELFLSYFKATGLEYLDGGVASGFNTVNRDEYETRLFQVKGKRTVRVTQV 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31263.8449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WBD4_9STRA2.410e-3477.78Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3MB93_9STRA1.810e-3379.27Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RPG3_9STRA5.340e-3377.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YLA3_9STRA2.250e-3174.39Villin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A024UB42_9STRA5.680e-3173.17HP domain-containing protein n=2 Tax=Aphanomyces i... [more]
W4FXZ0_9STRA7.760e-3175.61HP domain-containing protein n=12 Tax=Aphanomyces ... [more]
A0A6G0XN38_9STRA1.060e-3075.61HP domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A662XFT4_9STRA1.120e-2970.37Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A1V9Z593_9STRA1.270e-2970.73Villin-like protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A8K1CGN4_PYTOL1.740e-2971.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31263contigH-paniculata_contig31263:1205..2253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue5.5e-26
Seed eggNOG ortholog157072.XP_008867870.1
KEGG koko:K05761
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin filament capping
EggNOG OGsKOG0443@1,KOG0443@2759
COG Functional cat.S
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.8132305-CDS-H-paniculata_contig31263:1204..13301622929962.8132305-CDS-H-paniculata_contig31263:1204..1330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31263 1205..1330 -
1691481088.3999488-CDS-H-paniculata_contig31263:1204..13301691481088.3999488-CDS-H-paniculata_contig31263:1204..1330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31263 1205..1330 -
1622929962.830801-CDS-H-paniculata_contig31263:2130..22531622929962.830801-CDS-H-paniculata_contig31263:2130..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31263 2131..2253 -
1691481088.4116495-CDS-H-paniculata_contig31263:2130..22531691481088.4116495-CDS-H-paniculata_contig31263:2130..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31263 2131..2253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31263.8449.1prot_H-paniculata_contig31263.8449.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31263 1205..2253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31263.8449.1

>prot_H-paniculata_contig31263.8449.1 ID=prot_H-paniculata_contig31263.8449.1|Name=mRNA_H-paniculata_contig31263.8449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
QDEQGIAAYKTVELDDSLGGAAVQYRETQGRESPLFLSYFKRTGIEYLPG
GVASGFNKMEKDVYRTRLLQVKGKRVVRSYEVQ
back to top

mRNA from alignment at H-paniculata_contig31263:1205..2253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31263.8449.1 ID=mRNA_H-paniculata_contig31263.8449.1|Name=mRNA_H-paniculata_contig31263.8449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-paniculata_contig31263:1205..2253- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGAGCAAGGGATCGCGGCGTACAAGACGGTGGAATTAGATGATTC TCTTGGAGGTGCTGCGGTGCAGTACCGGGAAACGCAAGGGCGTGAGTCTC CGCTTTTCCTGTCGTACTTCAAGGTGATGGTGATGGTGATGTCATTGGAG CTAGACAACATAGTTACAATATGTACCCGTGAAATGGAAAAATCACTTGA AAGATGTAATGACTGTCGGGCAGGAGGGGAAGGGAAAGGAGGGGGGGGGG CTACCCATGTTTTGCATGCAATTATTGTTGGACCATTGGTCACTTGTCTT AGAGAGGACGGAGCTTTGTTCCCATCAGAGCGATTTCCGATGGGCTAATC GTGGGGGAGTGGCTTCACAAGTTCTTCGATGTCGAGAGGTGGTCAATAAT AAAATGAAGTAATGGTGACAAGTTAAACAGCATTCCACTACAAACAAGTA GTTCATTGTGCTGATGGTTGTCGATGATTGTATTATATAGTAGTACTGAA GTATGTGAACCCGCGTTTTCCCCGTATTATCACGTTCTAGTAAGAATACG ATCCTACCAGGCGAGAGCCTGGCTCAGGTGGGAACACCGCTCGCTTGGGG GATTGTTTCGGAGTTTTGGGGTTTACTGAAGTATGGGGCAGGCCCTTGGG TTTGGTTGTGTGATGCGTCCAGGGTCGGACGCTGTATGAAAACTGTTCCG ATTGTGCGATAAAATGGCACTGGTTTTCTTGTGGAAGACTCGGCGTGAGG AACTCCAGCGTCAGGAACGTTTCTCCTCTTGGACATTAGCTTGGGAAATA TCGTTCATGTTCTCGAGGGAGTTACTTCATTTGCAAAAAAAGCAAAAAAA GCTGTTTTTGAAATGTTTTATGGTATAATAAAATATGTTTTGTTTTATGA TTTGTTTTTGCAACATAAAACAGAGGACCGGCATCGAATATCTCCCCGGA GGCGTTGCGTCTGGGTTCAACAAGATGGAGAAGGATGTATACCGCACTCG TCTGCTGCAAGTGAAGGGAAAGCGTGTCGTCCGTAGCTATGAGGTACAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31263:1205..2253-

>mRNA_H-paniculata_contig31263.8449.1 ID=mRNA_H-paniculata_contig31263.8449.1|Name=mRNA_H-paniculata_contig31263.8449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig31263:1205..2253- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGAGCAAGGGATCGCGGCGTACAAGACGGTGGAATTAGATGATTC
TCTTGGAGGTGCTGCGGTGCAGTACCGGGAAACGCAAGGGCGTGAGTCTC
CGCTTTTCCTGTCGTACTTCAAGCAGGACGAGCAAGGGATCGCGGCGTAC
AAGACGGTGGAATTAGATGATTCTCTTGGAGGTGCTGCGGTGCAGTACCG
GGAAACGCAAGGGCGTGAGTCTCCGCTTTTCCTGTCGTACTTCAAGAGGA
CCGGCATCGAATATCTCCCCGGAGGCGTTGCGTCTGGGTTCAACAAGATG
GAGAAGGATGTATACCGCACTCGTCTGCTGCAAGTGAAGGGAAAGCGTGT
CGTCCGTAGCTATGAGGTACAGAGGACCGGCATCGAATATCTCCCCGGAG
GCGTTGCGTCTGGGTTCAACAAGATGGAGAAGGATGTATACCGCACTCGT
CTGCTGCAAGTGAAGGGAAAGCGTGTCGTCCGTAGCTATGAGGTACAG
back to top