mRNA_H-paniculata_contig31257.8447.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31257.8447.1
Unique NamemRNA_H-paniculata_contig31257.8447.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: A0A2N5SCW9_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5SCW9_9BASI)

HSP 1 Score: 63.5 bits (153), Expect = 3.950e-8
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:  394 KNHREAQASPEWEHWQRGEKVEMQGLIDNGVWTQGECPKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHFQE 639
            K +R A +SPE   W    K+E+  ++  GVWT    P N  +  TI ++++K   + N+ KFK RL A G  Q +G+ F E
Sbjct:  857 KTYRSAMSSPEAAEWSSAIKLELDAMVQLGVWTVVPIPSNHHLLGTIWVFRKKYDANGNLMKFKARLCAQGSAQQEGIDFNE 938
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BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: UPI000900F32D (uncharacterized protein LOC109147109 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900F32D)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-6
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  433 HWQRGEKVEMQGLIDNGVWTQGEC-PKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHFQE 639
            HW+   + E+Q L D+G W   +  P +K + +   +YK K   D ++E++K RL   GDRQIKGV + E
Sbjct:   92 HWREAMRQELQSLEDDGTWILEDLLPGHKAIDNK-WVYKVKYNADGSIERYKARLVVQGDRQIKGVDYNE 160
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BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: A0A146IJ40_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IJ40_MYCCL)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-5
Identity = 25/83 (30.12%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:  385 VELKNHREAQASPEWEHWQRGEKVEMQGLIDNGVWTQGECPKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHF 633
            +E +N  EA+ SP+W HW++  + E++ L  NG W   + P +  +     +++ K      V ++K RL A G  Q++GV +
Sbjct:  189 LEPRNLAEAKRSPDWPHWEKAIREELEMLEKNGTWELADAPHHANIVGNKWVFRIKRDAAGRVVRYKARLVAQGFSQVEGVDY 271
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BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: A0A151SIJ2_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SIJ2_CAJCA)

HSP 1 Score: 51.2 bits (121), Expect = 4.860e-5
Identity = 23/70 (32.86%), Postives = 36/70 (51.43%), Query Frame = 1 
Query:  430 EHWQRGEKVEMQGLIDNGVWTQGECPKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHFQE 639
            E W++   VE+Q +  NG W   + PK +       +YK K+ E   ++KFK RL   G  Q  GV +++
Sbjct:   37 EKWKKAMDVEIQAIEKNGTWELTDLPKGQKTIGVKWVYKTKLNEKGEIDKFKARLVVKGYNQEHGVDYRK 106
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BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: A0A151SQX0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SQX0_CAJCA)

HSP 1 Score: 54.3 bits (129), Expect = 5.000e-5
Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 1 
Query:  430 EHWQRGEKVEMQGLIDNGVWTQGECPKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHFQE 639
            E W++   VE+Q +  NG W   + PK +       +YK K+ E   ++KFK RL   G  Q  GV +QE
Sbjct:  808 EKWKKAMDVEIQAIEKNGTWELTDLPKGQKTIGVKWVYKTKLNEKGEIDKFKARLVVKGYNQEHGVDYQE 877
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BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: UPI00158C6C02 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Populus alba TaxID=43335 RepID=UPI00158C6C02)

HSP 1 Score: 51.6 bits (122), Expect = 5.240e-5
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 1 
Query:  436 WQRGEKVEMQGLIDNGVWTQGECPKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHFQE 639
            W+R    E+Q L  N  W   + P+ K +     +YK K+ E   ++KFK RL   G  Q  GV +QE
Sbjct:   39 WKRAMDAEIQALEKNETWELTDLPEGKKIIGVKWIYKTKLNEKGEIDKFKARLVVKGYNQKYGVDYQE 106
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BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: A0A2N5S3L2_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5S3L2_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 7.850e-5
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:  430 EHWQRGEKVEMQGLIDNGVWTQGEC-PKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHFQ 636
            E W++ E+VE+  +I + VW+     P +  + ST   YK+K+G D+ V KFK R+ A G RQ  G++F+
Sbjct:    7 EEWKKAEQVEIDNMIKHNVWSIIPLLPTHHTIPST-WAYKKKLGADNQVTKFKARICAQGFRQTYGLNFE 75
[Close]
BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU)

HSP 1 Score: 50.8 bits (120), Expect = 8.570e-5
Identity = 24/78 (30.77%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:  406 EAQASPEWEHWQRGEKVEMQGLIDNGVWTQGECPKNKLVGSTIMLYKRKIGEDSNVEKFKCRLAAHGDRQIKGVHFQE 639
            EAQASP+W HW+     E+  L  +  +   E P N  +  +  +++ K   + ++ ++K RL A G  Q+ G+ F E
Sbjct:   18 EAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNE 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31257.8447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2N5SCW9_9BASI3.950e-836.59Integrase catalytic domain-containing protein n=2 ... [more]
UPI000900F32D1.840e-638.57uncharacterized protein LOC109147109 n=1 Tax=Ipomo... [more]
A0A146IJ40_MYCCL1.450e-530.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SIJ2_CAJCA4.860e-532.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SQX0_CAJCA5.000e-535.71Retrovirus-related Pol polyprotein from transposon... [more]
UPI00158C6C025.240e-535.29uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A2N5S3L2_9BASI7.850e-538.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VH23_TRAPU8.570e-530.77Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31257contigH-paniculata_contig31257:215..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31257.8447.1prot_H-paniculata_contig31257.8447.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31257 325..807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.6388085-UTR-H-paniculata_contig31257:214..3241622929962.6388085-UTR-H-paniculata_contig31257:214..324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31257 215..324 -
1691481088.333397-UTR-H-paniculata_contig31257:214..3241691481088.333397-UTR-H-paniculata_contig31257:214..324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31257 215..324 -
1622929962.6834354-UTR-H-paniculata_contig31257:807..9371622929962.6834354-UTR-H-paniculata_contig31257:807..937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31257 808..937 -
1691481088.3623881-UTR-H-paniculata_contig31257:807..9371691481088.3623881-UTR-H-paniculata_contig31257:807..937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31257 808..937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.6509342-CDS-H-paniculata_contig31257:324..7181622929962.6509342-CDS-H-paniculata_contig31257:324..718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31257 325..718 -
1691481088.3472643-CDS-H-paniculata_contig31257:324..7181691481088.3472643-CDS-H-paniculata_contig31257:324..718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31257 325..718 -
1622929962.6716788-CDS-H-paniculata_contig31257:796..8071622929962.6716788-CDS-H-paniculata_contig31257:796..807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31257 797..807 -
1691481088.3547726-CDS-H-paniculata_contig31257:796..8071691481088.3547726-CDS-H-paniculata_contig31257:796..807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31257 797..807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31257.8447.1

>prot_H-paniculata_contig31257.8447.1 ID=prot_H-paniculata_contig31257.8447.1|Name=mRNA_H-paniculata_contig31257.8447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MLTMPGPVLRQLTGHFTGQQPSLFSTHTRSGRGANNGDGDGAALQSVITD
DIDLDDEEVMAYHKGDIMAMQVALAMPEELRGDLPWSSRITGRRRRRRSG
NTGKEERKSRCKASSTTGFGRRGSARRTSWSGAR*
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mRNA from alignment at H-paniculata_contig31257:215..937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31257.8447.1 ID=mRNA_H-paniculata_contig31257.8447.1|Name=mRNA_H-paniculata_contig31257.8447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig31257:215..937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGTATGGCACCCCGAGAGCCCGGAAAAGTAAGAAAGCGGTGTCCTCAC
CGCGGAGACCGGGGGGAAATGATAAGACCATCAATCGAACTCCACGGCTT
GGCAACAGCGGCCAGGTTGAGCTGGAAACGATGCTGACAATGTAACCACA
CCAGGAAGACCAGCTGCTGCAGCCCGAAGAAAAAGAGAAGGAACGACAGC
AAGAGGAGAAGCAGGACAGGCCTGGCCCCGTGCTGCGCCAACTAACCGGC
CATTTCACGGGGCAGCAACCGTCCCTTTTCTCTACGCATACTAGAAGCGG
CAGAGGCGCCAACAACGGTGACGGCGATGGAGCTGCGCTACAAAGTGTCA
TCACGGACGACATTGACCTCGACGACGAGGAAGTGATGGCCTACCACAAA
GGCGACATCATGGCGATGCAGGTCGCACTGGCGATGCCCGAAGAATTAAG
GGGTGACTTGCCGTGGAGCTCAAGAATCACCGGGAGGCGCAGGCGTCGCC
GGAGTGGGAACACTGGCAAAGAGGAGAGAAAGTCGAGATGCAAGGCCTCA
TCGACAACGGGGTTTGGACGCAGGGGGAGTGCCCGAAGAACAAGCTGGTC
GGGAGCACGATAATGCTCTACAAAAGGAAAATCGGCGAGGACAGCAACGT
GGAGAAATTTAAGTGCCGCCTGGCCGCCCACGGGGACCGTCAGATCAAAG
GCGTTCACTTCCAGGAAGCTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig31257:215..937-

>mRNA_H-paniculata_contig31257.8447.1 ID=mRNA_H-paniculata_contig31257.8447.1|Name=mRNA_H-paniculata_contig31257.8447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig31257:215..937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGACAATATGCTGACAATGCCTGGCCCCGTGCTGCGCCAACTAACC
GGCCATTTCACGGGGCAGCAACCGTCCCTTTTCTCTACGCATACTAGAAG
CGGCAGAGGCGCCAACAACGGTGACGGCGATGGAGCTGCGCTACAAAGTG
TCATCACGGACGACATTGACCTCGACGACGAGGAAGTGATGGCCTACCAC
AAAGGCGACATCATGGCGATGCAGGTCGCACTGGCGATGCCCGAAGAATT
AAGGGGTGACTTGCCGTGGAGCTCAAGAATCACCGGGAGGCGCAGGCGTC
GCCGGAGTGGGAACACTGGCAAAGAGGAGAGAAAGTCGAGATGCAAGGCC
TCATCGACAACGGGGTTTGGACGCAGGGGGAGTGCCCGAAGAACAAGCTG
GTCGGGAGCACGATAAGCCTGGCCCCGTGCTGCGCCAACTAACCGGCCAT
TTCACGGGGCAGCAACCGTCCCTTTTCTCTACGCATACTAGAAGCGGCAG
AGGCGCCAACAACGGTGACGGCGATGGAGCTGCGCTACAAAGTGTCATCA
CGGACGACATTGACCTCGACGACGAGGAAGTGATGGCCTACCACAAAGGC
GACATCATGGCGATGCAGGTCGCACTGGCGATGCCCGAAGAATTAAGGGG
TGACTTGCCGTGGAGCTCAAGAATCACCGGGAGGCGCAGGCGTCGCCGGA
GTGGGAACACTGGCAAAGAGGAGAGAAAGTCGAGATGCAAGGCCTCATCG
ACAACGGGGTTTGGACGCAGGGGGAGTGCCCGAAGAACAAGCTGGTCGGG
AGCACGATAA
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