mRNA_H-paniculata_contig31241.8444.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31241.8444.1
Unique NamemRNA_H-paniculata_contig31241.8444.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31241.8444.1 vs. uniprot
Match: D7FTQ0_ECTSI (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ0_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.450e-15
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 KAALSAHTDVPTAHYLRMVNCWHHRELQGSLDSLHRFFDYAARRG 135
            +AAL + +DVP AH+LR+VNC HHREL+GSLDSLHR+FDYA RRG
Sbjct:  225 QAALGSRSDVPKAHFLRLVNCMHHRELEGSLDSLHRYFDYAVRRG 269
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BLAST of mRNA_H-paniculata_contig31241.8444.1 vs. uniprot
Match: A0A6H5KKY0_9PHAE (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.460e-15
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 KAALSAHTDVPTAHYLRMVNCWHHRELQGSLDSLHRFFDYAARRG 135
            +AAL + +DVP AH+LR+VNC HHREL+GSLDSLHR+FDYA RRG
Sbjct:  186 QAALGSRSDVPKAHFLRLVNCMHHRELEGSLDSLHRYFDYAVRRG 230
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BLAST of mRNA_H-paniculata_contig31241.8444.1 vs. uniprot
Match: A0A7S2U8I9_9STRA (Anaphase-promoting complex subunit 5 (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8I9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 LSAHTDVPTAHYLRMVNCWHHRELQGSLDSLHRFFDYA 123
            L ++ ++P AH+LR +NC HH E  G+LDSLHR+FDYA
Sbjct:  218 LGSYPELPAAHFLRFLNCMHHGERVGALDSLHRYFDYA 255
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BLAST of mRNA_H-paniculata_contig31241.8444.1 vs. uniprot
Match: W7U440_9STRA (Anaphase-promoting complex subunit 5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U440_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.570e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 KAALSAHTDVPTAHYLRMVNCWHHRELQGSLDSLHRFFDYAARRG 135
            +A L  H ++P   +LR +N   HRE+ G+LD+LHR+FDYA RRG
Sbjct:  233 EALLQQHPELPRGQFLRYLNSSRHREVAGALDALHRYFDYAIRRG 277
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BLAST of mRNA_H-paniculata_contig31241.8444.1 vs. uniprot
Match: A0A388K336_CHABU (Anaphase-promoting complex subunit 5 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K336_CHABU)

HSP 1 Score: 49.3 bits (116), Expect = 2.410e-5
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   25 DVPTAHYLRMVNCWHHRELQGSLDSLHRFFDYAA 126
            ++P  HYLR +NC HH +  G++DSLHR+FDY  
Sbjct:  393 EMPKIHYLRYLNCLHHGDYPGAMDSLHRYFDYRV 426
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31241.8444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FTQ0_ECTSI5.450e-1573.33Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
A0A6H5KKY0_9PHAE5.460e-1573.33Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
A0A7S2U8I9_9STRA1.400e-757.89Anaphase-promoting complex subunit 5 (Fragment) n=... [more]
W7U440_9STRA5.570e-751.11Anaphase-promoting complex subunit 5 n=2 Tax=Monod... [more]
A0A388K336_CHABU2.410e-552.94Anaphase-promoting complex subunit 5 n=1 Tax=Chara... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31241contigH-paniculata_contig31241:1822..1986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7FTQ0
Preferred nameAPC5
KEGG koko:K03352
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04657,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04657,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000152,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein K11-linked ubiquitination
EggNOG OGsKOG4322@1,KOG4322@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.4681356-CDS-H-paniculata_contig31241:1821..19861622929962.4681356-CDS-H-paniculata_contig31241:1821..1986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31241 1822..1986 +
1691481088.2888846-CDS-H-paniculata_contig31241:1821..19861691481088.2888846-CDS-H-paniculata_contig31241:1821..1986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31241 1822..1986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31241.8444.1prot_H-paniculata_contig31241.8444.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31241 1822..1986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31241.8444.1

>prot_H-paniculata_contig31241.8444.1 ID=prot_H-paniculata_contig31241.8444.1|Name=mRNA_H-paniculata_contig31241.8444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
KAALSAHTDVPTAHYLRMVNCWHHRELQGSLDSLHRFFDYAARRGTRCRK
TGWW*
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mRNA from alignment at H-paniculata_contig31241:1822..1986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31241.8444.1 ID=mRNA_H-paniculata_contig31241.8444.1|Name=mRNA_H-paniculata_contig31241.8444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig31241:1822..1986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGGCACTAAGTGCGCACACTGATGTGCCCACGGCGCACTACTTGCG
CATGGTGAATTGCTGGCATCACCGAGAGCTGCAAGGATCCCTTGATAGCC
TGCACCGGTTCTTCGACTACGCCGCCAGACGAGGTACGAGATGCCGGAAG
ACGGGGTGGTGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31241:1822..1986+

>mRNA_H-paniculata_contig31241.8444.1 ID=mRNA_H-paniculata_contig31241.8444.1|Name=mRNA_H-paniculata_contig31241.8444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig31241:1822..1986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGGCACTAAGTGCGCACACTGATGTGCCCACGGCGCACTACTTGCG
CATGGTGAATTGCTGGCATCACCGAGAGCTGCAAGGATCCCTTGATAGCC
TGCACCGGTTCTTCGACTACGCCGCCAGACGAGGTACGAGATGCCGGAAG
ACGGGGTGGTGGTAGAAGGCGGCACTAAGTGCGCACACTGATGTGCCCAC
GGCGCACTACTTGCGCATGGTGAATTGCTGGCATCACCGAGAGCTGCAAG
GATCCCTTGATAGCCTGCACCGGTTCTTCGACTACGCCGCCAGACGAGGT
ACGAGATGCCGGAAGACGGGGTGGTGGTAG
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