mRNA_H-paniculata_contig3123.8442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3123.8442.1
Unique NamemRNA_H-paniculata_contig3123.8442.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3123.8442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3123contigH-paniculata_contig3123:8288..12895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1098
Cds size1011
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3123.8442.1prot_H-paniculata_contig3123.8442.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3123 8288..12809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.220624-CDS-H-paniculata_contig3123:8287..91311622929962.220624-CDS-H-paniculata_contig3123:8287..9131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3123 8288..9131 -
1691481088.2010753-CDS-H-paniculata_contig3123:8287..91311691481088.2010753-CDS-H-paniculata_contig3123:8287..9131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3123 8288..9131 -
1622929962.2356079-CDS-H-paniculata_contig3123:12642..128091622929962.2356079-CDS-H-paniculata_contig3123:12642..12809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3123 12643..12809 -
1691481088.2134461-CDS-H-paniculata_contig3123:12642..128091691481088.2134461-CDS-H-paniculata_contig3123:12642..12809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3123 12643..12809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.2586007-UTR-H-paniculata_contig3123:12809..128951622929962.2586007-UTR-H-paniculata_contig3123:12809..12895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3123 12810..12895 -
1691481088.2275035-UTR-H-paniculata_contig3123:12809..128951691481088.2275035-UTR-H-paniculata_contig3123:12809..12895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3123 12810..12895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3123.8442.1

>prot_H-paniculata_contig3123.8442.1 ID=prot_H-paniculata_contig3123.8442.1|Name=mRNA_H-paniculata_contig3123.8442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp
MLMAAWSPGDEILPPLPTRWRCRAILILAILGLSPSLGNAAISAAARRTR
GVLNERLPPLVQKYSAQGWQAGRVGTDGSTTIQGTLRPSSSTVESETDAG
KRHRPHPVCVSGTKGNAALIRRNTYRHGGPYPAELVRLAEGEATAALTSK
GEGMMEAVEGDFTPKTTTAIATTGDAVEKDEQDGGLIFRVGERSPSKLCR
NHPPAMASATGAATAAAMVSTTTGAPPQTTPTVASSWCPDEAVEYIINYP
AKKNQREVRQGHRRRRRRDRGSDQFSGVADVRNTVGAGVFACRRNSVSWE
TEKDGRSSEYLKHVLSELRAGGDGGGGAVAVVSRLLR
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mRNA from alignment at H-paniculata_contig3123:8288..12895-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3123.8442.1 ID=mRNA_H-paniculata_contig3123.8442.1|Name=mRNA_H-paniculata_contig3123.8442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4608bp|location=Sequence derived from alignment at H-paniculata_contig3123:8288..12895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGATGTGCTCCTGTCTCCGCGAGTGCAGCACAGCAGGACCACGGACAA
TAATTTGGAAAATCGTGACGCCTTTACGGTAGATATATGCTGATGGCTGC
CTGGTCGCCTGGGGATGAGATTTTACCGCCACTACCGACAAGATGGAGAT
GCCGCGCAATATTGATACTGGCTATATTAGGCTTGTCTCCTTCCCTTGGA
AACGCTGCTATCTCTGCCGCTGCACGGCGCACGCGTGGGGTTCTAAACGA
AAGGTACTACAATAATCGATCTCTACAGGCTGTGCGATGTATGTGCGTAT
TGCTAATGCTGTTGTACTTATTAGGCTGCGTTGTTGCTGCTGTTGAAGGT
GGTGTACACTGCTGTACTGGTACTGTGCTGCATTACTGCATTGTCTGTGC
GGTACTATCTAGCCATTCCAATCGCACTGTACTCCACTATTATAATGCCT
ATCGTGTGTTGCGTCTCACCGGTTCAACTGGATCATCAGGTACAGCTGTT
CCGAACACACCTTCTGTTATCTACTTACATATACTGTAGGGCTGTGTATC
CGCGCTTTGTCTTCGTTCCACCCACAACGATTCGCTGCGCTCGCAAATAA
TGAAGTAGGCACATGTCTAAAGATTCAACTGTAGAAGTTACCTTCGTATA
TATATATATATATTGTAGCAGCTCTGCAGGTTTGAAAAAAATATTCCGAA
ACGACAACCTACCTGACGTAACTCACAGTTGTACTGTCACCGTTTGATGA
ATTGTGCTTATGCGATGCAAGGTTCACTTGGGGTCATAACGAGCAAGCCT
GTTTTTGCGGAAAATATGGAAATCTGGGATTTTCCAGATTCTCGTACGGA
AATTTAAGAGGCAAAAATTACCCCCGAAGACGAGTATCGTCTACGCTACG
GCAGTCATTCTGCCGAGTATGTGTGAGACCTCCGCCAGTCACGCATCCCC
TAACAACTGTACCGTTAGTCCAGTATGGGTGAGGATGTTGTTGGTGATAG
GAGGCCTCATTCCATCCAATATTATCAACAATAACAGCGCAAGGAACGAA
GATACAGCAGTATAATTCCACCGCCTGCAGTGCGCAATTTGGGATGTTTC
AACACCAAATTGGCTGGGAGAGGCGGGGGAATGGGAATACAACATGAACA
AAAATACCTCGTTTTTTCATTCTGAAGCTAGACCGCCAAAAATGAACAGC
TTTGATATAGAGTGATAGCACAACTTTTTTGGCTGTCCCACCCCCCAGCT
TCGAGTCTGGTAAGCGAGTAGAACAGGGTAAACCGTGTGTTCAAAATACC
GGAACGTGGTTTTGTCGGCAACACGGACATGTGATGATACGGCAAAAGCA
GGCCGCCCGAACCCCATCGACGATGTTCAGGTCAACCCTGCAGCGCAAGA
ATTGTAATATATGGGCGGTTACTTAACAAGCTTAGTCGACCGCTTGAATG
GTGACCGCCTAGCTAACCCTTTAGACGGCTCACACCTCGAAATTTTGTTT
CCTGGGATCTGCTTTGCGGCTGTTTTTTCTTCTTAAGCAAAACGAGCGTT
ACTGTATATGCTGGAAAATGGCAATGGACGCAATTTGTACAGGTGAGGCA
GTGATCTCTCGTCCTGTCTGAGAAGAATATTGGTTGATTCGTCGGCATTT
TGCCCCCCCCCGCCGGGAGAGCAACAATGGTTGATACCTGCTCTACCCAC
TTTGTCGAGCAGAATGGTTGAGGCTCGCTCTGACCACCCCGCGCGAAAGC
CCCGTGCTGAATATATTCCGCTCGCATATCGAAACCTGGCGCCAATTCAC
TCTCTGGCAACACACACCAGGTATACTCTCACGTAATCAAGCTATCGCCA
GAGCTAGCCGACCTTGCGTATAAACCCTTGCAAGCCAGGCCAACCGCTTG
ATTTCCGCAGCTAACAAAAGGGATGTAGGTTTGCGCCTTTGCACCTGGTG
AAATGTGACGGCGAAGTAAACGAGGGCCTGACGTTGTTCACAAACGAAAA
AGTATTTCACAGGTTCAGCAAAAATGTAGGGGCCTGGGTATTGCCTCCCA
GTTACTGTTTCAGTTAACTAAATGGATTGAGTTGCAATTTTTTTCTTGCT
TTTATGGTGAATCTTCTTGTATTTACGTCTTTACCATCTTTCCTTGATTC
TCGTCGGCCGCGACTGCTGGACGGCTCATGATGCAGCCCTAATATATATA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAACAGAAATCATTAG
CATAACACAAGAGCTAACGTTTGACCCAAATCGCATCGCAAGTTGAGGCA
ATTCCCTGAGCGGAGTATTGCCCCCTTTTCCAATCTTGAATATTTCACCT
TGATGTCTGTTTATATGTACATATTCACCATAGTTCGTGCTGGAGGTTTG
CGTCGGTTCTGCTCGACTTGGGGCACAACATTTACGATGTTTGTATTAAA
ACAAATGATAAAAAAGGAGGGACTGTTAATTATGAAGTAGCTTTCATCCA
AGCGACAAATAAGCCTCCTTCACGTGTACGAACGATGTGTGCTCACTCAA
TTGAAGCCTTCTGTTTTTTCTTGTGTCTGTCTCCCAACATAGATGAAGCT
TGAAGCTTCGGAGAATCCCCCGTTGCCAGAGTACCCTACACAATAGTACA
GTGCACTGAATGCCAACGGTGCACATAAACTATGTGAGACTCCTGGCGAA
AATTGAAAATTGGAGGAACAAAGCATTACAGGTATAGTCAATTTCGAAAA
CGTCAAATCCGTGTGCCTGGGAGAATGATATTCGCGCTGACTAATCGCAC
AGGTTCATGCTGCCCTTTAAGGGGAGATATTATGTCCTTATTCTCGGTAA
GACATGGCCCAAATCAGGCTCTTCCCAAAAATTAACAGGGATATCCCTAT
TTAAGGCGCTCCAATATCAGGCGAAGCTCTCTTTATGGTGGGTCAGATGA
CATCGACTCGTCACCAAAAATCAAAATCCTACATGTGTCCTATCTTATGT
GGTAATTTTAATGAAATAGACGCTTTTCGATCTCAGACGGGCATTTTTGC
CGTGTTATCGATCACCCCGCCTTGAATCGGGTTACCCAATGTACTTGTTA
AGACTCTAAGGTGATGGTCATCGTTCCGGAGCAATTCTCTACCTGGTACC
CAAAAAAATTATATATATGAATCTTGACGGACAGCGTGCGCGGGCCAAGG
ACGCAACGCGGATTACATGAGTTACCGTAGCCGTGGCTCTATTGTAGACC
TCGCAAATACAATCCAACAAGGCAAGCTTTGACCTCCTTATTAACACAAT
CACGTCCCTGTGACAAATTTTGAGTGTCTTCTTGTACGAACACATGATGC
CACACACAGGATGGCTTCTACTTTTCATCGTGCATTCAGAAGTTTACACC
ATATTTGCCCCGCACAATACCGTTTTGCTTAATTCTTTTTTTAAACTTAG
TCGTTTGTTCCGCCAAATTTGAATACTTTCACCCAATATGAAGTTCACGA
TTTGTTTTTCATATTTCCCCTCAAATTGAGCAACCAAGAATGATAGGCGA
TTTTGCAACATATTTTTTCTTTCGTCCAACAATTCCCATGATTTTGGTTT
TCAATATTTTTGCCACACATACCAGCAGTAGAACAAAATTCCGGTTCGAA
ACAATCCTTCGTATGTGTCATGCACACTGGGTAAAATACCCCAGTCTACT
GTGGTCGTGCCACACGAATTGCTGACTGATACCCCCCTCTGCTTCCTGTG
CTTCCATCGTACAGATTACCACCGCTAGTACAAAAATATTCTGCCCAAGG
CTGGCAAGCTGGACGTGTCGGGACAGATGGATCGACGACAATACAGGGGA
CCCTAAGACCATCATCATCAACAGTAGAGTCGGAGACAGACGCCGGAAAA
CGACATCGCCCGCACCCGGTGTGCGTATCGGGTACTAAGGGAAACGCGGC
TCTGATAAGAAGGAACACCTATCGGCACGGCGGACCGTATCCGGCAGAGT
TGGTTCGTCTTGCAGAAGGAGAAGCCACCGCTGCACTGACCTCCAAGGGA
GAAGGTATGATGGAGGCGGTGGAAGGAGATTTCACGCCAAAGACAACCAC
CGCCATCGCCACAACGGGTGACGCCGTTGAAAAAGACGAGCAGGATGGAG
GGTTGATATTCCGCGTCGGCGAAAGATCGCCGTCAAAATTGTGTCGGAAT
CACCCTCCGGCGATGGCATCGGCGACGGGGGCGGCGACGGCGGCGGCGAT
GGTATCGACAACAACTGGAGCTCCTCCACAAACAACACCGACCGTTGCTT
CATCTTGGTGCCCGGACGAGGCTGTGGAATATATCATTAATTACCCTGCG
AAGAAGAACCAGCGGGAGGTGCGACAGGGGCACCGGCGCCGGCGGCGTCG
TGACCGCGGGTCCGATCAGTTTTCGGGAGTGGCGGATGTCCGAAACACGG
TTGGCGCTGGCGTCTTCGCCTGCAGGCGGAATAGCGTAAGCTGGGAAACA
GAAAAGGACGGAAGGAGTTCGGAGTACTTGAAACACGTACTGTCGGAGTT
GCGAGCGGGAGGGGATGGTGGGGGCGGAGCTGTTGCGGTGGTGTCACGGC
TACTGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3123:8288..12895-

>mRNA_H-paniculata_contig3123.8442.1 ID=mRNA_H-paniculata_contig3123.8442.1|Name=mRNA_H-paniculata_contig3123.8442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig3123:8288..12895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGATGGCTGCCTGGTCGCCTGGGGATGAGATTTTACCGCCACTACC
GACAAGATGGAGATGCCGCGCAATATTGATACTGGCTATATTAGGCTTGT
CTCCTTCCCTTGGAAACGCTGCTATCTCTGCCGCTGCACGGCGCACGCGT
GGGGTTCTAAACGAAAGATGCTGATGGCTGCCTGGTCGCCTGGGGATGAG
ATTTTACCGCCACTACCGACAAGATGGAGATGCCGCGCAATATTGATACT
GGCTATATTAGGCTTGTCTCCTTCCCTTGGAAACGCTGCTATCTCTGCCG
CTGCACGGCGCACGCGTGGGGTTCTAAACGAAAGATTACCACCGCTAGTA
CAAAAATATTCTGCCCAAGGCTGGCAAGCTGGACGTGTCGGGACAGATGG
ATCGACGACAATACAGGGGACCCTAAGACCATCATCATCAACAGTAGAGT
CGGAGACAGACGCCGGAAAACGACATCGCCCGCACCCGGTGTGCGTATCG
GGTACTAAGGGAAACGCGGCTCTGATAAGAAGGAACACCTATCGGCACGG
CGGACCGTATCCGGCAGAGTTGGTTCGTCTTGCAGAAGGAGAAGCCACCG
CTGCACTGACCTCCAAGGGAGAAGGTATGATGGAGGCGGTGGAAGGAGAT
TTCACGCCAAAGACAACCACCGCCATCGCCACAACGGGTGACGCCGTTGA
AAAAGACGAGCAGGATGGAGGGTTGATATTCCGCGTCGGCGAAAGATCGC
CGTCAAAATTGTGTCGGAATCACCCTCCGGCGATGGCATCGGCGACGGGG
GCGGCGACGGCGGCGGCGATGGTATCGACAACAACTGGAGCTCCTCCACA
AACAACACCGACCGTTGCTTCATCTTGGTGCCCGGACGAGGCTGTGGAAT
ATATCATTAATTACCCTGCGAAGAAGAACCAGCGGGAGGTGCGACAGGGG
CACCGGCGCCGGCGGCGTCGTGACCGCGGGTCCGATCAGTTTTCGGGAGT
GGCGGATGTCCGAAACACGGTTGGCGCTGGCGTCTTCGCCTGCAGGCGGA
ATAGCGTAAGCTGGGAAACAGAAAAGGACGGAAGGAGTTCGGAGTACTTG
AAACACGTACTGTCGGAGTTGCGAGCGGGAGGGGATGGTGGGGGCGGAGC
TGTTGCGGTGGTGTCACGGCTACTGCGCATTACCACCGCTAGTACAAAAA
TATTCTGCCCAAGGCTGGCAAGCTGGACGTGTCGGGACAGATGGATCGAC
GACAATACAGGGGACCCTAAGACCATCATCATCAACAGTAGAGTCGGAGA
CAGACGCCGGAAAACGACATCGCCCGCACCCGGTGTGCGTATCGGGTACT
AAGGGAAACGCGGCTCTGATAAGAAGGAACACCTATCGGCACGGCGGACC
GTATCCGGCAGAGTTGGTTCGTCTTGCAGAAGGAGAAGCCACCGCTGCAC
TGACCTCCAAGGGAGAAGGTATGATGGAGGCGGTGGAAGGAGATTTCACG
CCAAAGACAACCACCGCCATCGCCACAACGGGTGACGCCGTTGAAAAAGA
CGAGCAGGATGGAGGGTTGATATTCCGCGTCGGCGAAAGATCGCCGTCAA
AATTGTGTCGGAATCACCCTCCGGCGATGGCATCGGCGACGGGGGCGGCG
ACGGCGGCGGCGATGGTATCGACAACAACTGGAGCTCCTCCACAAACAAC
ACCGACCGTTGCTTCATCTTGGTGCCCGGACGAGGCTGTGGAATATATCA
TTAATTACCCTGCGAAGAAGAACCAGCGGGAGGTGCGACAGGGGCACCGG
CGCCGGCGGCGTCGTGACCGCGGGTCCGATCAGTTTTCGGGAGTGGCGGA
TGTCCGAAACACGGTTGGCGCTGGCGTCTTCGCCTGCAGGCGGAATAGCG
TAAGCTGGGAAACAGAAAAGGACGGAAGGAGTTCGGAGTACTTGAAACAC
GTACTGTCGGAGTTGCGAGCGGGAGGGGATGGTGGGGGCGGAGCTGTTGC
GGTGGTGTCACGGCTACTGCGC
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