mRNA_H-paniculata_contig31227.8441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 157 bits (396), Expect = 3.830e-41 Identity = 90/223 (40.36%), Postives = 135/223 (60.54%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRR----LRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEIDV 731
++ L+ N TWD + LP GRKAI KW+FK K K DGS+ + KA+L A+G+SQ G D+ ET PVA+ +++R + SLAAKH+ EL+ MDV+ +LN+ + + P + + L+KSLY KQ+ R WN+T+D +L IG S A+ C+Y R + E ++V++YVD L++A E + K +S+RF+M DLG LS L I++
Sbjct: 68 IKSLLDNKTWDVVE---LPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEI 285
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: I1R5L4_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=I1R5L4_ORYGL) HSP 1 Score: 145 bits (365), Expect = 9.330e-37 Identity = 87/237 (36.71%), Postives = 135/237 (56.96%), Query Frame = 3
Query: 48 REMARANGGGVEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPF----------MRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEI 725
+E+ R+ ++ ++ NGTW+ + P G K + KW+FK+KL+ DG++ + KA+L A+G++Q+EGEDFF+T PVAR++T+R + SLAA H + MDV T+LN + D P + +L KSLY KQ+ + W++ D L G ++ A+ C+Y+ R GGE VI+ +YVD ++I G E ++E K +SQ F MKDLG +L I
Sbjct: 40 KEVVRSE---MDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYM---------DQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 259
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A0E0C3T6_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0C3T6_9ORYZ) HSP 1 Score: 150 bits (380), Expect = 3.720e-36 Identity = 83/222 (37.39%), Postives = 131/222 (59.01%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRL---FCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRREKV-DEFKYNISQRFRMKDLGSLSRVLEIDV 731
++ ++ NGTW+ LP G +AIC KWIFK+KLK +G++ + KA+L A+G++Q +GED+F+T PVARM T+R + +LAA + +++ MDV +LN + ++ F P D + +L KSLY KQ+ W++ D L+ G ++ A+ C+Y D G+ VI+ +YVD ++I G V E K +S +F MKDLG +L I +
Sbjct: 620 MDSILSNGTWEIT---HLPQGCRAICCKWIFKKKLKPNGTIDKFKARLVAKGYTQRQGEDYFDTFSPVARMPTIRALVALAAAYGYQIHQMDVKTAFLNGELEEEIYMQQPDGFVIPGQEDK--VCKLEKSLYGLKQAPMQWHEKFDKTLISAGFTVNDADKCVYSRFD--GDIGVILCLYVDDILILGTNLNVISEIKSYLSNKFDMKDLGEAKVILNIKI 834
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A2P6QR46_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QR46_ROSCH) HSP 1 Score: 143 bits (361), Expect = 1.820e-34 Identity = 84/220 (38.18%), Postives = 127/220 (57.73%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCC-PYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEIDV 731
++ L N TW R+P G+KA+ +W++K KL DGSV RNKA+L A+GF+Q G D+ ET PVA+MST+R + S+A H + L MDV +L+ + ++L P S D+ + +L KS+Y KQS R W L +L +G Q S A+ L+ G + ++V +YVD L++ G E+++ K ++ RF +KDLG L L I+V
Sbjct: 47 LQALHDNNTWSIV---RIPKGKKAVGSRWVYKTKLHSDGSVERNKARLVARGFTQTYGVDYKETFAPVAKMSTVRVLLSVAVNHAWPLYQMDVKNAFLHGDLEEEVYMKLPPGHPQSHDLEIVCKLHKSIYGLKQSPRAWYAKLSSVLEEVGFQRSNADSSLFVRI--GSTSKLMVLIYVDDLIVTGDNIEEINTLKQSLRNRFVLKDLGILKYFLGIEV 261
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A5N6LAP9_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LAP9_9ASTR) HSP 1 Score: 144 bits (362), Expect = 4.410e-34 Identity = 85/222 (38.29%), Postives = 132/222 (59.46%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRL---FCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRRE-KVDEFKYNISQRFRMKDLGSLSRVLEIDV 731
++ +++N TW D LP G K + KWIFKRK+K DGS+ + KA+L QGF Q+EG DFF+T VPVAR+ST+R + +LA+ H+ + MDV +LN ++ F P + + +L KSLY KQ+ + W++ D+++L G L+ A+ C+Y + G+ VI+ +YVD ++I G + +DE K +S +F MKDLG +L I +
Sbjct: 379 LDSIMQNNTWKLTD---LPPGCKPLGNKWIFKRKMKVDGSIDKFKARLVVQGFRQKEGIDFFDTYVPVARISTIRLLVALASIHNLIIHQMDVKTAFLNGELDEEVYMKQPEGFILPGNEHK--VCKLIKSLYGLKQAPKQWHQKFDEVILSNGFYLNQADKCVYSKFNSLGK-GVIICLYVDDMLIFGTDQIHIDETKSLLSSKFDMKDLGEAIVILGIRI 594
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: Q2R4Q7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R4Q7_ORYSJ) HSP 1 Score: 144 bits (363), Expect = 6.300e-34 Identity = 85/227 (37.44%), Postives = 129/227 (56.83%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPF----------MRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEI 725
++ ++ NGTW+ + P G K + KW+FK+KL+ DG++ + KAQL A+G++Q+EGEDFF+T PVAR++T+R + SLAA H + MDV +LN + D P + +L KSLY KQ+ + W++ D L G ++ A+ C+Y+ R GGE VI+ +YVD ++I G E ++E K +SQ F MKDLG +L I
Sbjct: 747 MDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKAQLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYM---------DQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 959
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 141 bits (356), Expect = 6.950e-34 Identity = 85/217 (39.17%), Postives = 123/217 (56.68%), Query Frame = 3
Query: 87 LVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIA-GRREKVDEFKYNISQRFRMKDLGSLSRVLEIDVD 734
L +NGTW D LP GRKA+ KWIFKRKL EDG+V R KA+L AQGF+Q+ G D+ E PV R T R + ++A++ ++ DV YLN + S +R + + L+KSLY KQ+G WNK D +L + Q S +PCLY R+ G T +++ YVD +VIA E+ +E +++ F++ LG +S L I ++
Sbjct: 20 LRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKIN 231
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL) HSP 1 Score: 141 bits (356), Expect = 8.200e-34 Identity = 83/227 (36.56%), Postives = 129/227 (56.83%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPF----------MRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEI 725
++ ++ NGTW+ + P G K + KW+FK+KL+ DG++ + KA+L A+G++Q+EGEDFF+T PVAR++T+R + SLAA H + MDV +LN + D P + +L KSLY KQ+ + W++ D L G ++ A+ C+Y+ R GGE VI+ +YVD ++I G + ++E K +SQ F MKDLG +L I
Sbjct: 207 MDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYM---------DQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLDVINEVKSFLSQNFDMKDLGVADVILNI 419
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: UPI00090075D0 (uncharacterized protein LOC109136272 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00090075D0) HSP 1 Score: 139 bits (349), Expect = 8.550e-34 Identity = 89/255 (34.90%), Postives = 141/255 (55.29%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRRE-KVDEFKYNISQRFRMKDLGSLSRVLEIDVDVTAPMVP*QYPKVATSTRY*KDTVL-TSFEACPPL 836
++ L +N TWD LP G+KAI KW++K KLK DG++ R+KA+L A G+ Q EG+DF +T PVA+++T+R V +LA H++ L +DV+ +L+ + + RL+KSLY KQ+ R WNK L LL +G Q S + L F+R + GE +++ VYVD +++ G ++DE K + F +KDLG L+ L +++ ++ + +Y KD + T E C P+
Sbjct: 5 LKALEENETWDLTV---LPSGKKAIGSKWVYKTKLKPDGTIERHKARLVAIGYQQVEGQDFTQTFSPVAKLATVRIVIALATVHNWSLCQLDVNNAFLHGFLDEEVYMLPSAGYTKAKKGEVCRLKKSLYGLKQASRQWNKELARFLLSLGFQQSKQDYSL-FTRTKNGEF-LVILVYVDDMMVTGTSLFQIDEVKQALDLAFTIKDLGDLNYFLGVEITRSSQGT------FMSQKKYIKDILTDTGMEECFPV 248
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A2K3M5H6_TRIPR (Retrotransposon protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M5H6_TRIPR) HSP 1 Score: 140 bits (354), Expect = 9.730e-34 Identity = 94/260 (36.15%), Postives = 137/260 (52.69%), Query Frame = 3
Query: 78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRR----LRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRREK-VDEFKYNISQRFRMKDLGSLSRVLEIDVDVTAPMVP*QYPKVATSTRY*KDTVLTSF--EACPPL 836
+ +VKN TW D LP G++AI +KW++K K EDGSV + KA+L A+G+SQ+ G DF ET PVARM T+RTV +LAA+ + ++ +DV + +LN + ++ P + R L K+LY KQ+ R WN +D L G S + P LY R+ G ++V +YVD L+ AG V FK + + + M DLG + L I V T + T +Y D +L F E+C P+
Sbjct: 5 MRSIVKNRTWQLVD---LPTGKEAIGLKWVYKTKYNEDGSVQKYKARLVAKGYSQQPGVDFNETFAPVARMETIRTVLALAAQLELQVFQLDVKSAFLNGELEEEVYVKQ---PQGFEAKGKERKVYKLHKALYGLKQAPRAWNSKIDAYFLQNGFVKSPSEPSLYVKRN--GANFLMVCLYVDDLIYAGTNPNMVQSFKEAMMKEYEMTDLGLMKYFLGIQVKQTKGEI------FITQEKYIHD-LLKKFRLESCKPV 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig31227.8441.1 >prot_H-paniculata_contig31227.8441.1 ID=prot_H-paniculata_contig31227.8441.1|Name=mRNA_H-paniculata_contig31227.8441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp MHGRITHVPLDRTRPDIAYAVHQEARSMEDPCREDFSTCKRIFRYLSTVSback to top mRNA from alignment at H-paniculata_contig31227:105..1612+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig31227.8441.1 ID=mRNA_H-paniculata_contig31227.8441.1|Name=mRNA_H-paniculata_contig31227.8441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1508bp|location=Sequence derived from alignment at H-paniculata_contig31227:105..1612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig31227:105..1612+ >mRNA_H-paniculata_contig31227.8441.1 ID=mRNA_H-paniculata_contig31227.8441.1|Name=mRNA_H-paniculata_contig31227.8441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig31227:105..1612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |