mRNA_H-paniculata_contig31227.8441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31227.8441.1
Unique NamemRNA_H-paniculata_contig31227.8441.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.830e-41
Identity = 90/223 (40.36%), Postives = 135/223 (60.54%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRR----LRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEIDV 731
            ++ L+ N TWD  +   LP GRKAI  KW+FK K K DGS+ + KA+L A+G+SQ  G D+ ET  PVA+ +++R + SLAAKH+ EL+ MDV+  +LN+       + +         P + +    L+KSLY  KQ+ R WN+T+D  +L IG   S A+ C+Y  R +  E  ++V++YVD L++A    E +   K  +S+RF+M DLG LS  L I++
Sbjct:   68 IKSLLDNKTWDVVE---LPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEI 285          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: I1R5L4_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=I1R5L4_ORYGL)

HSP 1 Score: 145 bits (365), Expect = 9.330e-37
Identity = 87/237 (36.71%), Postives = 135/237 (56.96%), Query Frame = 3
Query:   48 REMARANGGGVEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPF----------MRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEI 725
            +E+ R+    ++ ++ NGTW+  +    P G K +  KW+FK+KL+ DG++ + KA+L A+G++Q+EGEDFF+T  PVAR++T+R + SLAA H   +  MDV  T+LN        +         D P           + +L KSLY  KQ+ + W++  D  L   G  ++ A+ C+Y+ R  GGE  VI+ +YVD ++I G   E ++E K  +SQ F MKDLG    +L I
Sbjct:   40 KEVVRSE---MDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYM---------DQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 259          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A0E0C3T6_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0C3T6_9ORYZ)

HSP 1 Score: 150 bits (380), Expect = 3.720e-36
Identity = 83/222 (37.39%), Postives = 131/222 (59.01%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRL---FCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRREKV-DEFKYNISQRFRMKDLGSLSRVLEIDV 731
            ++ ++ NGTW+      LP G +AIC KWIFK+KLK +G++ + KA+L A+G++Q +GED+F+T  PVARM T+R + +LAA + +++  MDV   +LN   +    ++    F  P   D   + +L KSLY  KQ+   W++  D  L+  G  ++ A+ C+Y   D  G+  VI+ +YVD ++I G    V  E K  +S +F MKDLG    +L I +
Sbjct:  620 MDSILSNGTWEIT---HLPQGCRAICCKWIFKKKLKPNGTIDKFKARLVAKGYTQRQGEDYFDTFSPVARMPTIRALVALAAAYGYQIHQMDVKTAFLNGELEEEIYMQQPDGFVIPGQEDK--VCKLEKSLYGLKQAPMQWHEKFDKTLISAGFTVNDADKCVYSRFD--GDIGVILCLYVDDILILGTNLNVISEIKSYLSNKFDMKDLGEAKVILNIKI 834          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A2P6QR46_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QR46_ROSCH)

HSP 1 Score: 143 bits (361), Expect = 1.820e-34
Identity = 84/220 (38.18%), Postives = 127/220 (57.73%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCC-PYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEIDV 731
            ++ L  N TW      R+P G+KA+  +W++K KL  DGSV RNKA+L A+GF+Q  G D+ ET  PVA+MST+R + S+A  H + L  MDV   +L+   +    ++L    P S D+  + +L KS+Y  KQS R W   L  +L  +G Q S A+  L+     G  + ++V +YVD L++ G   E+++  K ++  RF +KDLG L   L I+V
Sbjct:   47 LQALHDNNTWSIV---RIPKGKKAVGSRWVYKTKLHSDGSVERNKARLVARGFTQTYGVDYKETFAPVAKMSTVRVLLSVAVNHAWPLYQMDVKNAFLHGDLEEEVYMKLPPGHPQSHDLEIVCKLHKSIYGLKQSPRAWYAKLSSVLEEVGFQRSNADSSLFVRI--GSTSKLMVLIYVDDLIVTGDNIEEINTLKQSLRNRFVLKDLGILKYFLGIEV 261          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A5N6LAP9_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LAP9_9ASTR)

HSP 1 Score: 144 bits (362), Expect = 4.410e-34
Identity = 85/222 (38.29%), Postives = 132/222 (59.46%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRL---FCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRRE-KVDEFKYNISQRFRMKDLGSLSRVLEIDV 731
            ++ +++N TW   D   LP G K +  KWIFKRK+K DGS+ + KA+L  QGF Q+EG DFF+T VPVAR+ST+R + +LA+ H+  +  MDV   +LN        ++    F  P +     + +L KSLY  KQ+ + W++  D+++L  G  L+ A+ C+Y   +  G+  VI+ +YVD ++I G  +  +DE K  +S +F MKDLG    +L I +
Sbjct:  379 LDSIMQNNTWKLTD---LPPGCKPLGNKWIFKRKMKVDGSIDKFKARLVVQGFRQKEGIDFFDTYVPVARISTIRLLVALASIHNLIIHQMDVKTAFLNGELDEEVYMKQPEGFILPGNEHK--VCKLIKSLYGLKQAPKQWHQKFDEVILSNGFYLNQADKCVYSKFNSLGK-GVIICLYVDDMLIFGTDQIHIDETKSLLSSKFDMKDLGEAIVILGIRI 594          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: Q2R4Q7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R4Q7_ORYSJ)

HSP 1 Score: 144 bits (363), Expect = 6.300e-34
Identity = 85/227 (37.44%), Postives = 129/227 (56.83%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPF----------MRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEI 725
            ++ ++ NGTW+  +    P G K +  KW+FK+KL+ DG++ + KAQL A+G++Q+EGEDFF+T  PVAR++T+R + SLAA H   +  MDV   +LN        +         D P           + +L KSLY  KQ+ + W++  D  L   G  ++ A+ C+Y+ R  GGE  VI+ +YVD ++I G   E ++E K  +SQ F MKDLG    +L I
Sbjct:  747 MDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKAQLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYM---------DQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 959          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 141 bits (356), Expect = 6.950e-34
Identity = 85/217 (39.17%), Postives = 123/217 (56.68%), Query Frame = 3
Query:   87 LVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIA-GRREKVDEFKYNISQRFRMKDLGSLSRVLEIDVD 734
            L +NGTW   D   LP GRKA+  KWIFKRKL EDG+V R KA+L AQGF+Q+ G D+ E   PV R  T R + ++A++    ++  DV   YLN   + S  +R        +   +  L+KSLY  KQ+G  WNK  D +L  +  Q S  +PCLY  R+  G T +++  YVD +VIA    E+ +E    +++ F++  LG +S  L I ++
Sbjct:   20 LRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKIN 231          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL)

HSP 1 Score: 141 bits (356), Expect = 8.200e-34
Identity = 83/227 (36.56%), Postives = 129/227 (56.83%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPF----------MRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRR-EKVDEFKYNISQRFRMKDLGSLSRVLEI 725
            ++ ++ NGTW+  +    P G K +  KW+FK+KL+ DG++ + KA+L A+G++Q+EGEDFF+T  PVAR++T+R + SLAA H   +  MDV   +LN        +         D P           + +L KSLY  KQ+ + W++  D  L   G  ++ A+ C+Y+ R  GGE  VI+ +YVD ++I G   + ++E K  +SQ F MKDLG    +L I
Sbjct:  207 MDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYM---------DQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLDVINEVKSFLSQNFDMKDLGVADVILNI 419          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: UPI00090075D0 (uncharacterized protein LOC109136272 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00090075D0)

HSP 1 Score: 139 bits (349), Expect = 8.550e-34
Identity = 89/255 (34.90%), Postives = 141/255 (55.29%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRRLRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRRE-KVDEFKYNISQRFRMKDLGSLSRVLEIDVDVTAPMVP*QYPKVATSTRY*KDTVL-TSFEACPPL 836
            ++ L +N TWD      LP G+KAI  KW++K KLK DG++ R+KA+L A G+ Q EG+DF +T  PVA+++T+R V +LA  H++ L  +DV+  +L+        +             + RL+KSLY  KQ+ R WNK L   LL +G Q S  +  L F+R + GE  +++ VYVD +++ G    ++DE K  +   F +KDLG L+  L +++  ++           +  +Y KD +  T  E C P+
Sbjct:    5 LKALEENETWDLTV---LPSGKKAIGSKWVYKTKLKPDGTIERHKARLVAIGYQQVEGQDFTQTFSPVAKLATVRIVIALATVHNWSLCQLDVNNAFLHGFLDEEVYMLPSAGYTKAKKGEVCRLKKSLYGLKQASRQWNKELARFLLSLGFQQSKQDYSL-FTRTKNGEF-LVILVYVDDMMVTGTSLFQIDEVKQALDLAFTIKDLGDLNYFLGVEITRSSQGT------FMSQKKYIKDILTDTGMEECFPV 248          
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Match: A0A2K3M5H6_TRIPR (Retrotransposon protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M5H6_TRIPR)

HSP 1 Score: 140 bits (354), Expect = 9.730e-34
Identity = 94/260 (36.15%), Postives = 137/260 (52.69%), Query Frame = 3
Query:   78 VEVLVKNGTWDSKDPGRLPVGRKAICMKWIFKRKLKEDGSVARNKAQLAAQGFSQEEGEDFFETSVPVARMSTLRTVSSLAAKHDFELEGMDVHATYLNAPRKRSCLLRLFCCPYSRDVPFMRR----LRKSLYAPKQSGRHWNKTLDDLLLGIGLQLSTANPCLYFSRDEGGETDVIVAVYVDHLVIAGRREK-VDEFKYNISQRFRMKDLGSLSRVLEIDVDVTAPMVP*QYPKVATSTRY*KDTVLTSF--EACPPL 836
            +  +VKN TW   D   LP G++AI +KW++K K  EDGSV + KA+L A+G+SQ+ G DF ET  PVARM T+RTV +LAA+ + ++  +DV + +LN   +    ++    P   +     R    L K+LY  KQ+ R WN  +D   L  G   S + P LY  R+  G   ++V +YVD L+ AG     V  FK  + + + M DLG +   L I V  T   +        T  +Y  D +L  F  E+C P+
Sbjct:    5 MRSIVKNRTWQLVD---LPTGKEAIGLKWVYKTKYNEDGSVQKYKARLVAKGYSQQPGVDFNETFAPVARMETIRTVLALAAQLELQVFQLDVKSAFLNGELEEEVYVKQ---PQGFEAKGKERKVYKLHKALYGLKQAPRAWNSKIDAYFLQNGFVKSPSEPSLYVKRN--GANFLMVCLYVDDLIYAGTNPNMVQSFKEAMMKEYEMTDLGLMKYFLGIQVKQTKGEI------FITQEKYIHD-LLKKFRLESCKPV 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31227.8441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WHK2_9STRA3.830e-4140.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
I1R5L4_ORYGL9.330e-3736.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0E0C3T6_9ORYZ3.720e-3637.39Uncharacterized protein n=1 Tax=Oryza meridionalis... [more]
A0A2P6QR46_ROSCH1.820e-3438.18Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A5N6LAP9_9ASTR4.410e-3438.29Integrase catalytic domain-containing protein n=1 ... [more]
Q2R4Q7_ORYSJ6.300e-3437.44Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A182GIT5_AEDAL6.950e-3439.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
I1PQ20_ORYGL8.200e-3436.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00090075D08.550e-3434.90uncharacterized protein LOC109136272 n=1 Tax=Beta ... [more]
A0A2K3M5H6_TRIPR9.730e-3436.15Retrotransposon protein n=1 Tax=Trifolium pratense... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31227contigH-paniculata_contig31227:105..1612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1173
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31227.8441.1prot_H-paniculata_contig31227.8441.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31227 1373..1612 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.1017585-UTR-H-paniculata_contig31227:104..5141622929962.1017585-UTR-H-paniculata_contig31227:104..514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31227 105..514 +
1691481088.1525311-UTR-H-paniculata_contig31227:104..5141691481088.1525311-UTR-H-paniculata_contig31227:104..514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31227 105..514 +
1622929962.121093-UTR-H-paniculata_contig31227:805..12301622929962.121093-UTR-H-paniculata_contig31227:805..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31227 806..1230 +
1691481088.168638-UTR-H-paniculata_contig31227:805..12301691481088.168638-UTR-H-paniculata_contig31227:805..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31227 806..1230 +
1622929962.1386554-UTR-H-paniculata_contig31227:1274..13721622929962.1386554-UTR-H-paniculata_contig31227:1274..1372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31227 1275..1372 +
1691481088.178773-UTR-H-paniculata_contig31227:1274..13721691481088.178773-UTR-H-paniculata_contig31227:1274..1372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31227 1275..1372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.1525202-CDS-H-paniculata_contig31227:1372..16121622929962.1525202-CDS-H-paniculata_contig31227:1372..1612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31227 1373..1612 +
1691481088.1893966-CDS-H-paniculata_contig31227:1372..16121691481088.1893966-CDS-H-paniculata_contig31227:1372..1612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31227 1373..1612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31227.8441.1

>prot_H-paniculata_contig31227.8441.1 ID=prot_H-paniculata_contig31227.8441.1|Name=mRNA_H-paniculata_contig31227.8441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MHGRITHVPLDRTRPDIAYAVHQEARSMEDPCREDFSTCKRIFRYLSTVS
DLGIAFGGKNNCHGLEAFVHADWAEDVEVF
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mRNA from alignment at H-paniculata_contig31227:105..1612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31227.8441.1 ID=mRNA_H-paniculata_contig31227.8441.1|Name=mRNA_H-paniculata_contig31227.8441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1508bp|location=Sequence derived from alignment at H-paniculata_contig31227:105..1612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAGAGCCGAAATCTGTGGCAGAAGCATTAAAGAGCCCAGAGGCAGA GAAATGGCGCGCGCCAATGGAGGAGGAGTGGAGGTGCTGGTGAAGAATGG GACGTGGGATAGCAAGGACCCGGGGAGGTTACCGGTAGGGCGGAAGGCGA TCTGTATGAAATGGATTTTCAAGCGCAAACTGAAGGAGGACGGCAGCGTA GCACGCAACAAAGCGCAACTAGCGGCTCAAGGTTTTTCGCAGGAGGAGGG TGAAGATTTCTTTGAAACCAGTGTCCCCGTAGCTCGCATGTCGACATTGC GTACTGTTTCCAGCCTGGCCGCCAAGCACGATTTCGAACTAGAAGGCATG GACGTACATGCGACGTATTTGAACGCCCCCAGGAAGAGGAGCTGCTTGTT AAGATTGTTCGTTGGATGAGTATGTTATTCAGTAACGGACCATGTATGAG GATATTTGGATGAATATACATGGTATTGTCATCGGTATTAGAGTATGTCA TACAACATGTGAAGTACTATATATTTAGGATATAGGTGAAACACACGTAT TTCACTTCTTCTCAAGTGTAATTTATTACACTGTTATTTCTTCATTGGGT CACGCCCACGTGGTCTGCGGACCTGTGGGCGTGTGGAATCGACATGAGTC TTTCCTGATCATGAGAGTATCACGGCAAATTCAACAAAGACACCCCCGGA GTGTTGCCCTTACTCCCGAGACGTACCGTTTATGCGCCGCCTGCGTAAAA GCCTGTATGCCCCCAAGCAGAGCGGCCGACACTGGAATAAGACTCTTGAT GATCTTCTTCTTGGGATAGGACTCCAGCTTTCCACTGCCAACCCATGCTT GTACTTCTCTCGGGACGAAGGGGGAGAGACAGACGTTATCGTGGCCGTCT ATGTTGACCACCTGGTCATCGCTGGACGTCGTGAGAAAGTAGACGAGTTC AAGTACAACATAAGTCAGCGTTTCAGGATGAAAGACTTGGGCTCCCTCTC GCGCGTGTTGGAAATAGACGTAGACGTGACCGCCCCAATGGTACCATAGC AATATCCCAAGGTGGCTACATCCACGAGGTACTGAAAAGATACGGTTTTG ACGAGTTTCGAGGCGTGTCCACCCCTGTAGAGGAAAATTGAAGATTTTGG CACCCAAGTTGGCTGACAAGCCCCCCGAATCAAAACCACTCGGGGCTGTA CTGTCGGACATGGGCGTAGAAGTACAAGAAAGCAACAATGGGAGAAGTTG CAATTCATCTGAATACAGATGCATGGCAGGATCACTCATGTACCCCTCGA CAGAACTAGACCTGATATAGCATACGCGGTACACCAAGAAGCACGTAGTA TGGAGGACCCATGTCGGGAAGACTTCAGTACATGCAAGCGCATTTTTCGC TATCTCAGTACTGTGTCTGATCTTGGCATCGCGTTCGGTGGTAAGAATAA TTGTCACGGTCTGGAAGCATTCGTTCATGCCGATTGGGCGGAAGATGTCG AGGTGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig31227:105..1612+

>mRNA_H-paniculata_contig31227.8441.1 ID=mRNA_H-paniculata_contig31227.8441.1|Name=mRNA_H-paniculata_contig31227.8441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig31227:105..1612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGGCAGGATCACTCATGTACCCCTCGACAGAACTAGACCTGATAT
AGCATACGCGGTACACCAAGAAGCACGTAGTATGGAGGACCCATGTCGGG
AAGACTTCAGTACATGCAAGCGCATTTTTCGCTATCTCAGTACTGTGTCT
GATCTTGGCATCGCGTTCGGTGGTAAGAATAATTGTCACGGTCTGGAAGC
ATTCGTTCATGCCGATTGGGCGGAAGATGTCGAGGTGTTTATGCATGGCA
GGATCACTCATGTACCCCTCGACAGAACTAGACCTGATATAGCATACGCG
GTACACCAAGAAGCACGTAGTATGGAGGACCCATGTCGGGAAGACTTCAG
TACATGCAAGCGCATTTTTCGCTATCTCAGTACTGTGTCTGATCTTGGCA
TCGCGTTCGGTGGTAAGAATAATTGTCACGGTCTGGAAGCATTCGTTCAT
GCCGATTGGGCGGAAGATGTCGAGGTGTTT
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