mRNA_H-paniculata_contig1131.843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1131.843.1
Unique NamemRNA_H-paniculata_contig1131.843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 6.300e-55
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    4 QGRLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQ 294
            +GRLSYYIGGE MTLCHLEHPMYMLGYLPKEDRVYLMDKQQN++SYRVRQAMLQYQTAVVRKDFETANS+LPSIP  EYTAVARFLESQGFK+EAFQ
Sbjct:  165 KGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ 261
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A6H5K868_9PHAE (Coatomer_WDAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K868_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 4.280e-54
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    4 QGRLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQV 297
            QGRLSYYIGGE MTLCHLEHPMYMLGYLPKEDRVYLMDKQQN++SYRVRQAMLQYQTAVVRKDFETANS+LPSIP  EYTAVARFLESQGFK+EAFQV
Sbjct:   12 QGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 109
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 167 bits (424), Expect = 4.200e-46
Identity = 81/97 (83.51%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    7 GRLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQV 297
            GRLSYY+GGEVMTLCHL+HPMYMLGYLPKEDRVYLMDK + ++SY+V Q+ LQYQTAVVRKDFE AN+LLPSIP+SEYTAVARFLESQGFKEEA  V
Sbjct:  545 GRLSYYVGGEVMTLCHLDHPMYMLGYLPKEDRVYLMDKAKGIYSYKVLQSYLQYQTAVVRKDFEAANALLPSIPASEYTAVARFLESQGFKEEALAV 641
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A7S2XXQ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.900e-39
Identity = 70/96 (72.92%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:   10 RLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQV 297
            RL+YY+GG+VMTL HL+HPMY+LGYLPKEDRVYL+DKQ N  S++V Q++L+YQTAVVRKDF+ AN+LLPSIP SE++ VARFLESQGFK+EA  V
Sbjct:  544 RLNYYVGGKVMTLMHLDHPMYLLGYLPKEDRVYLVDKQTNFISFKVLQSVLEYQTAVVRKDFDAANALLPSIPVSEHSDVARFLESQGFKQEAMAV 639
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.670e-38
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    7 GRLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQV 297
            G+L+Y +GGEVMTLCHL HPMY+LGY+PKEDR +L+DK  N+ SY++  +ML YQ+AVVR+DF TANSLLP IP SEY AVARFLESQGFK+EA QV
Sbjct:  549 GKLNYLVGGEVMTLCHLSHPMYLLGYVPKEDRAFLVDKTYNVHSYKLLLSMLSYQSAVVRQDFVTANSLLPLIPKSEYPAVARFLESQGFKQEALQV 645
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A7S2G0J9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0J9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.340e-35
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:   10 RLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQV 297
            RL+Y++GGE MTLCHL+  MYMLGYLPKEDRV+L+DK  N+ SY+V  ++L++QTAVVR D E AN +LPSIP SE+ +VARFLESQG KEEA  V
Sbjct:   21 RLNYFVGGETMTLCHLDQEMYMLGYLPKEDRVFLIDKALNVVSYKVLLSVLEFQTAVVRDDIEAANEILPSIPESEHNSVARFLESQGLKEEALGV 116
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A4D9D3N3_9STRA (Coatomer_WDAD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3N3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.890e-35
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:   10 RLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQV 297
            RL YY+GG++MTLCHL+ P YMLGYL KE+RVYLMDKQ N+ SY+V  AMLQYQTAVVR+DF  AN+LL SIP +E + VARFLESQG+KEEA  V
Sbjct:  560 RLQYYVGGQIMTLCHLDSPKYMLGYLAKENRVYLMDKQLNVVSYKVLLAMLQYQTAVVREDFAVANTLLSSIPEAELSNVARFLESQGYKEEALVV 655
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A7S3ZMY1_9STRA (Coatomer subunit beta' n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMY1_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.560e-35
Identity = 65/101 (64.36%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    7 GRLSYYIGGEVMTLCHLEH----PMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQV 297
            GRL+Y++GG  MTLCHL+     P++MLG+LPKEDRVYLMD+ +N+FSYR   A+LQYQTAVVR DFE AN++LP+IP SE+++VARFLE+QG+K+ A QV
Sbjct:  543 GRLNYFVGGNTMTLCHLDQQSTGPLFMLGFLPKEDRVYLMDRSRNVFSYRALLAVLQYQTAVVRHDFEAANTILPAIPESEHSSVARFLEAQGYKDVALQV 643
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: A0A8K1CIQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIQ5_PYTOL)

HSP 1 Score: 136 bits (343), Expect = 3.520e-35
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    7 GRLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQVKS 303
            GRL+YY+GGEVMTL HLE  +YMLGYLP+E+ V+LMDK +N++SY V   ML+YQTAVVR+DFETAN++LP IP  +   VARFLESQGFKEEA  + +
Sbjct:  545 GRLNYYVGGEVMTLAHLEQKLYMLGYLPRENLVFLMDKMKNVYSYTVSLVMLEYQTAVVRRDFETANAILPKIPQDQMDYVARFLESQGFKEEALALST 643
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BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Match: K3WFB2_GLOUD (Coatomer_WDAD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFB2_GLOUD)

HSP 1 Score: 136 bits (342), Expect = 4.810e-35
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    7 GRLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVRQAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQVKS 303
            GRL+YY+GGEVMTL HLE  MYMLGYLP+E+ V+LMDK +N++SY V   ML+YQTA+VR+DFETAN++LP IP  +   VARFLESQGFKEEA  + +
Sbjct:  546 GRLNYYVGGEVMTLAHLEMKMYMLGYLPRENLVFLMDKMKNVYSYMVSLVMLEYQTAIVRRDFETANAILPKIPHDQMDYVARFLESQGFKEEALALST 644
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1131.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI6.300e-5591.75Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A6H5K868_9PHAE4.280e-5492.86Coatomer_WDAD domain-containing protein n=1 Tax=Ec... [more]
A0A835YRX4_9STRA4.200e-4683.51Coatomer WD associated region-domain-containing pr... [more]
A0A7S2XXQ5_9STRA5.900e-3972.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3HJI1_9STRA2.670e-3871.13Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2G0J9_9STRA1.340e-3566.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A4D9D3N3_9STRA1.890e-3570.83Coatomer_WDAD domain-containing protein n=2 Tax=Mo... [more]
A0A7S3ZMY1_9STRA2.560e-3564.36Coatomer subunit beta' n=4 Tax=Pelagomonas calceol... [more]
A0A8K1CIQ5_PYTOL3.520e-3565.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WFB2_GLOUD4.810e-3565.66Coatomer_WDAD domain-containing protein n=1 Tax=Gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1131contigH-paniculata_contig1131:1563..2358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue8.7e-45
Seed eggNOG ortholog2880.D8LNJ0
KEGG koko:K17302
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons2
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.3263462-CDS-H-paniculata_contig1131:1562..17031622928839.3263462-CDS-H-paniculata_contig1131:1562..1703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 1563..1703 -
1691480639.868962-CDS-H-paniculata_contig1131:1562..17031691480639.868962-CDS-H-paniculata_contig1131:1562..1703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 1563..1703 -
1622928839.3438869-CDS-H-paniculata_contig1131:2187..23581622928839.3438869-CDS-H-paniculata_contig1131:2187..2358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 2188..2358 -
1691480639.8801055-CDS-H-paniculata_contig1131:2187..23581691480639.8801055-CDS-H-paniculata_contig1131:2187..2358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 2188..2358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1131.843.1prot_H-paniculata_contig1131.843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1131 1563..2358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1131.843.1

>prot_H-paniculata_contig1131.843.1 ID=prot_H-paniculata_contig1131.843.1|Name=mRNA_H-paniculata_contig1131.843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MQGRLSYYIGGEVMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNMFSYRVR
QAMLQYQTAVVRKDFETANSLLPSIPSSEYTAVARFLESQGFKEEAFQVK
SKE*
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mRNA from alignment at H-paniculata_contig1131:1563..2358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1131.843.1 ID=mRNA_H-paniculata_contig1131.843.1|Name=mRNA_H-paniculata_contig1131.843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=796bp|location=Sequence derived from alignment at H-paniculata_contig1131:1563..2358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGGCGATTGAGCTACTACATCGGTGGCGAGGTAATGACTCTTTG
CCACCTGGAGCACCCTATGTACATGCTGGGCTACCTCCCGAAGGAGGACA
GGGTGTACCTCATGGATAAGCAGCAGAACATGTTCAGCTACCGGGTCCGC
CAGGCGATGCTCCAATATCAGGTTAGATTTTTAGAAAGGCGTCGGTACCT
CGGTGCGGGGCGGTGGGGTCTTCCCTCAGCCGCTTTCTTAACGTTTTGAG
GCACGTCTGTGAGATAGTCGTCGAAAAATCGTTTTCCCCTTGAACTGTAC
AGCTGTTCCGAAGGGTGCATTATTGTACACCTTAGGAGATACGTGAAGGT
GGGCCGTTTAGTGTTTGTAAGGGTGTTTAGCCGCGTTGCGAACCGGCCCT
TCGTTTAAGAAGTGGCTGAAAAACACTCGTTGTTGATCTATTTTTGCTGA
TTGGAGTACATACAACTACAGATTAAAGTCAACTACGCAACCTCAACATG
GGGGTACAGTGGAGTTATAATATATGGACTGTCAGGTTTAACTTGGGAAT
AAAAAAACCATACAGTGAAAAGGAGGTTGGTTTTATTAATCCCCCCCCCC
CGCGCGCGCGCCCCACTACCCCCTACCTCCCCCTCGACTATTTGACGACT
TTCAGACGGCTGTTGTGCGTAAGGACTTCGAGACGGCTAACTCATTGCTG
CCCTCTATTCCCAGCTCTGAATATACGGCCGTGGCGCGGTTTCTAGAGTC
TCAGGGTTTCAAGGAGGAGGCGTTTCAGGTAAAGAGTAAAGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1131:1563..2358-

>mRNA_H-paniculata_contig1131.843.1 ID=mRNA_H-paniculata_contig1131.843.1|Name=mRNA_H-paniculata_contig1131.843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig1131:1563..2358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGGCGATTGAGCTACTACATCGGTGGCGAGGTAATGACTCTTTG
CCACCTGGAGCACCCTATGTACATGCTGGGCTACCTCCCGAAGGAGGACA
GGGTGTACCTCATGGATAAGCAGCAGAACATGTTCAGCTACCGGGTCCGC
CAGGCGATGCTCCAATATCAGATGCAGGGGCGATTGAGCTACTACATCGG
TGGCGAGGTAATGACTCTTTGCCACCTGGAGCACCCTATGTACATGCTGG
GCTACCTCCCGAAGGAGGACAGGGTGTACCTCATGGATAAGCAGCAGAAC
ATGTTCAGCTACCGGGTCCGCCAGGCGATGCTCCAATATCAGACGGCTGT
TGTGCGTAAGGACTTCGAGACGGCTAACTCATTGCTGCCCTCTATTCCCA
GCTCTGAATATACGGCCGTGGCGCGGTTTCTAGAGTCTCAGGGTTTCAAG
GAGGAGGCGTTTCAGGTAAAGAGTAAAGAGTAGACGGCTGTTGTGCGTAA
GGACTTCGAGACGGCTAACTCATTGCTGCCCTCTATTCCCAGCTCTGAAT
ATACGGCCGTGGCGCGGTTTCTAGAGTCTCAGGGTTTCAAGGAGGAGGCG
TTTCAGGTAAAGAGTAAAGAGTAG
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