mRNA_H-paniculata_contig3115.8425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3115.8425.1
Unique NamemRNA_H-paniculata_contig3115.8425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: D7G9J1_ECTSI (Chromosome 10 open reading frame 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J1_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.420e-39
Identity = 102/232 (43.97%), Postives = 116/232 (50.00%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEELRAQRQREQELADRERRRRVKAGLP----------PNDHDPATSTGTLSYRRLLKYVRQGRHEGHALVRQAMQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQSRWGGRVNDDVGVDGGAEGGVRSAATGSEGTGVNSAAMATRKAWAGELERDRTAEDEMDDYLSALLL 666
            +V+ +GQFECGALRC ER+DLHSYELNFKYKE G VKNELVKVRVCPQCARKL+RKKIE LR QR+                             P+    AT  G    R   K       EGH L+RQA+ AA                            R SRWG R++                          +   A+RKAWAGELERDRTAEDEMDDYLS+LLL
Sbjct:   36 VVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRRQRKAXXXXXXXXXXXXXXXXXXXXXXXXXXSSPSGSVSATPDGNADDRHGRKLRETSAGEGHDLIRQAVAAAGGTQTDAKKRN-----------------RPSRWGDRLDSSERTAXXXXXXXXXXXXXXXXXXAMAGDDASRKAWAGELERDRTAEDEMDDYLSSLLL 250
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A1Y2E9D1_9FUNG (Uncharacterized protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2E9D1_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 2.090e-11
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEELRAQ 192
            +++ +GQF CG + C E  +LHS+E+NF YKED + KN LVK+R+CP+C+ KL  KKI++L+ Q
Sbjct:  122 LISGKGQFICGNVDCSESENLHSWEVNFAYKEDNMKKNALVKLRLCPKCSYKLNYKKIKQLKKQ 185
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A1Y1XP36_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XP36_9FUNG)

HSP 1 Score: 70.9 bits (172), Expect = 5.790e-11
Identity = 37/90 (41.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEELRAQRQREQELADRERRRRVKAGLPPNDHD 270
            +++ +GQF CG + C E  +LHS+E+NF Y+ED   KN LVK+R+CP+C+ KL  KKI++L+ Q        ++E R+++K     +D D
Sbjct:  123 LISGKGQFICGNVDCSESENLHSWEVNFAYREDNEKKNALVKLRLCPKCSYKLNYKKIKQLKKQ--------EKEERKKLKHKHYSSDED 204
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A1Y1V025_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V025_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 8.640e-11
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEEL 183
            +++ +GQF CG + C E  +LHS+E+NF YKED   KN LVK+R+CP+C+ KL  KKI++L
Sbjct:  122 LISGKGQFICGNVDCTETENLHSWEVNFAYKEDNEKKNALVKLRLCPKCSYKLNYKKIKQL 182
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: Q29K66_DROPS (Uncharacterized protein, isoform A n=4 Tax=pseudoobscura subgroup TaxID=32358 RepID=Q29K66_DROPS)

HSP 1 Score: 68.6 bits (166), Expect = 2.680e-10
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKL-YRKKIEELRAQRQREQ-ELADRERRRRVKAGLPPND 264
            +VA  GQF+CG+  C ER DL S+E+NFKY E GV  N LVKVR+CP    +L YR K +E + Q++RE+ E   R R +R K     ND
Sbjct:  106 VVAGTGQFQCGSRHCGERTDLRSWEVNFKYIEQGVPMNALVKVRLCPTHTDQLNYRTKKKEYKKQKRREKDECRARRRNKRRKLDDTAND 195
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A0G4HCS7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HCS7_9ALVE)

HSP 1 Score: 69.3 bits (168), Expect = 2.740e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEELRAQRQRE 204
            ++  +GQF CG   C ER  L+SYE+NF YKEDG +K  LVK R+CP CA KL  K I+  + QR+ E
Sbjct:  174 VIRGEGQFSCGNKHCSERHQLNSYEVNFAYKEDGQMKQALVKARLCPSCAYKLNYKYIKAWKKQRKAE 241
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A0L0SCR1_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SCR1_ALLM3)

HSP 1 Score: 67.0 bits (162), Expect = 5.100e-10
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEELRAQR-QREQELADRE 225
            +VA +GQ+ECG L C ER  L S+E+ F Y E G  K+ LVK+R+CP C RKL+ KK +E R QR +R Q+  D E
Sbjct:  103 VVAGKGQWECGNLACSERSGLKSWEVLFGYVEQGEKKSALVKLRLCPNCTRKLHYKKDKERRRQRRERTQDAGDDE 178
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A7S2WRJ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRJ6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.300e-10
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKL--YRKK 171
            +V  +GQF CG  +C  R  LHS+E+NFKYKE G V+NELVK+R+C +CA+K+  YR K
Sbjct:   87 VVDGKGQFVCGNKKCDTRDGLHSFEVNFKYKEHGTVRNELVKLRLCRRCAKKMTYYRDK 145
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A1X2GXJ3_9FUNG (Uncharacterized protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GXJ3_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 9.590e-10
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEEL 183
            ++  +GQF C + RC +  DL S+E+NF Y EDGV KNELVKVR+CP C+ KL    I++L
Sbjct:  114 VIQGKGQFVCASNRCEDLLDLKSWEVNFGYMEDGVKKNELVKVRLCPTCSNKLNHNSIKKL 174
[Close]
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Match: A0A1X2HHM2_SYNRA (Folate-sensitive fragile site protein Fra10Ac1-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HHM2_SYNRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.010e-9
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCARKLYRKKIEELRAQRQREQ 207
            +V+ +GQF CG+ RC     L S+E+NF Y EDGV KNELVKVR+CP C+ +L  K ++    +R+RE+
Sbjct:  113 VVSGKGQFACGSTRCDNTASLKSWEVNFAYVEDGVRKNELVKVRLCPDCSYRLNYKTMKRASKKRKREE 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3115.8425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9J1_ECTSI4.420e-3943.97Chromosome 10 open reading frame 4 n=1 Tax=Ectocar... [more]
A0A1Y2E9D1_9FUNG2.090e-1151.56Uncharacterized protein n=1 Tax=Neocallimastix cal... [more]
A0A1Y1XP36_9FUNG5.790e-1141.11Uncharacterized protein (Fragment) n=1 Tax=Anaerom... [more]
A0A1Y1V025_9FUNG8.640e-1152.46Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
Q29K66_DROPS2.680e-1048.89Uncharacterized protein, isoform A n=4 Tax=pseudoo... [more]
A0A0G4HCS7_9ALVE2.740e-1051.47Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0L0SCR1_ALLM35.100e-1051.32Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A7S2WRJ6_9STRA6.300e-1055.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1X2GXJ3_9FUNG9.590e-1052.46Uncharacterized protein n=1 Tax=Hesseltinella vesi... [more]
A0A1X2HHM2_SYNRA1.010e-949.28Folate-sensitive fragile site protein Fra10Ac1-dom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3115contigH-paniculata_contig3115:4454..8985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D7G9J1
Preferred nameFRA10AC1
KEGG koko:K01230,ko:K01363,ko:K13121
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04140,ko04141,ko04142,ko04210,ko04612,ko04621,ko04924,map00510,map00513,map01100,map04140,map04141,map04142,map04210,map04612,map04621,map04924
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Folate-sensitive fragile site protein Fra10Ac1
EggNOG OGsKOG1297@1,KOG1297@2759
Ec32 ortholog descriptionFolate-sensitive fragile site protein Fra10Ac1
Ec32 orthologEc-00_011460.1
EC3.2.1.113,3.4.22.1
COG Functional cat.S
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01002,ko03041,ko03110,ko04131,ko04147
Exons4
Model size669
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3115.8425.1prot_H-paniculata_contig3115.8425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3115 4454..8985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.9647481-CDS-H-paniculata_contig3115:4453..45791622929957.9647481-CDS-H-paniculata_contig3115:4453..4579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 4454..4579 +
1691481086.543601-CDS-H-paniculata_contig3115:4453..45791691481086.543601-CDS-H-paniculata_contig3115:4453..4579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 4454..4579 +
1622929957.98278-CDS-H-paniculata_contig3115:6067..62751622929957.98278-CDS-H-paniculata_contig3115:6067..6275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 6068..6275 +
1691481086.5537004-CDS-H-paniculata_contig3115:6067..62751691481086.5537004-CDS-H-paniculata_contig3115:6067..6275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 6068..6275 +
1622929958.0082042-CDS-H-paniculata_contig3115:8584..87851622929958.0082042-CDS-H-paniculata_contig3115:8584..8785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 8585..8785 +
1691481086.5617056-CDS-H-paniculata_contig3115:8584..87851691481086.5617056-CDS-H-paniculata_contig3115:8584..8785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 8585..8785 +
1622929958.0247056-CDS-H-paniculata_contig3115:8851..89851622929958.0247056-CDS-H-paniculata_contig3115:8851..8985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 8852..8985 +
1691481086.5728853-CDS-H-paniculata_contig3115:8851..89851691481086.5728853-CDS-H-paniculata_contig3115:8851..8985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3115 8852..8985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3115.8425.1

>prot_H-paniculata_contig3115.8425.1 ID=prot_H-paniculata_contig3115.8425.1|Name=mRNA_H-paniculata_contig3115.8425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
MVAYQGQFECGALRCLERRDLHSYELNFKYKEDGVVKNELVKVRVCPQCA
RKLYRKKIEELRAQRQREQELADRERRRRVKAGLPPNDHDPATSTGTLSY
RRLLKYVRQGRHEGHALVRQAMQAAAAAAGKTRPSSSGGDNSGDSALSSG
KRRRQSRWGGRVNDDVGVDGGAEGGVRSAATGSEGTGVNSAAMATRKAWA
GELERDRTAEDEMDDYLSALLL*
back to top

mRNA from alignment at H-paniculata_contig3115:4454..8985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3115.8425.1 ID=mRNA_H-paniculata_contig3115.8425.1|Name=mRNA_H-paniculata_contig3115.8425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4532bp|location=Sequence derived from alignment at H-paniculata_contig3115:4454..8985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCCTACCAGGGCCAGTTTGAGTGCGGTGCATTGCGGTGCCTTGA
AAGGAGAGACCTGCACAGCTACGAGCTCAACTTTAAGTACAAGGAAGATG
GGGTGGTTAAGAACGAACTCGTCAAGGTAAGCGCGAGGGACCAGGGGGGG
TGCCACAGTTAGTCTGTAGATCTACAACGCTCATGGGATAACTCCATCGT
ACACCCGTTTAGATTATCTAGCCGACTTCAAATCTTAATCGTGTACACTT
ATCACCAATATTAGAGCAAATGTAGTTGCGGGTTTCTTCTTCAATGTGCT
AGTTTTTTAACCAGTTTATCGAAACCGGATTCCTCTGCCGATACTGAAAT
CGAGGTCCGATGGCGAAACTCGCCTCGAAGATCCCAGAATCAGCTTTTCG
TTCGCCTAGTAGTTTTTGTATCGCCTTCGTACCATGGTCACTTCGTACTT
TTTTTTTTTTTTTCGCCTGTTATATCCTGCCGCCGGCCGGTTGGAAACAG
CTGCAGTAGGATTTCTGTTGCTGACTTCATGGTGGGAGCCAATGACGTAC
GACACGTGTGTAGAAATCTTGCGGTGGGTGCTTGGTCAAGTGCCAAAACT
TGTCCCTGCGACAGTCCCTCGGAGCCCCATAGAGAAAAACGTTCCGAATC
TGACCGTGCAGCCTAACTTGTTGGGTATTCGACGATATAAATATATGTAG
CTCTGTGCATGTACAAGTCTGTGTTGGGACGTAAAATCCGCAAAAAAAGT
GTTTCGATGAACTGAGCAACGAACCCACCAATAGATACTATTACTCTTCG
GTCCAAATCTTGATATCTTTCAACTTGCCAGATGTCACCACGTCTCCTTA
TGTCGACCTAGCTCAATCATACGGTGGAGAGCACGTTCCTGGCATCCCAG
GTTCCTGAACGCTGGTTCCCTACACAGCGTCCAGTGGCGTTTCCGTTCCA
GTATGCGGAACAGCTGTGCTAGCTGCTACTTCCGACTCTGCATGACCACT
TCATCCGCAGCACATGCCAATCGAGTGCGTGCTCCGCGCGACGTCCCAAA
AAGTTGAAACCAATGACTGGAGCACGCGGTGTTCCCTTGAGAGCCAGCCT
GTCGCGGGAGTATCTTGTTCTCGATACGACGTGCTTCTGACGAACCGAGC
GAACCCATGATATTATTTATAGTATCTGGACCAAGGCCGGACCTGTACGT
GCGTAGTTTCCAAACGGATGTACGGTACATTGTATTATTTTTCAAGCAAT
GCACAATAAACCGAACTCGTGCGAAGAGCATTTACACTGAATTAAATAAT
TGAAAATACAAGAACAAGTGGTGCCGCAATTTTTGCCGTCTGATTCTTGT
GTGCAGCAATTTGTCTAGCTAGGAGTAGCTTGGATGTTTATCCGAACAGG
TTGATCCAATATTTCGACCATGGTGTTTCAACCCGTTTTTCTTCGGTGCA
GTCTGTAGCAGACTCGACCACAAAGTTTACACGTAGCCCTTGGCAACTTC
GCAACAGAAGTAAAGAGCGCCCCCAAAAAATGAAAAACATTTCATTCGTG
TGGAGAATTTCAAAATTATTGTCGCTACAATACTATTGCACTGCATTTGG
TTCCCCCACAACAGGTTCGCGTTTGTCCCCAGTGCGCTCGGAAACTGTAC
CGGAAAAAAATCGAAGAGTTGCGAGCTCAGAGGCAACGAGAGCAAGAGCT
GGCAGACAGGGAGCGCCGCCGGAGGGTCAAGGCGGGATTGCCCCCGAATG
ACCACGATCCGGCGACGTCCACAGGTACCCTATCGTACCGTAGGTTGCTG
AAATACGTTCGACAGGGAAGGCGTACGAAGTAGCCAGCCGTGAGGGATGC
ATCGACAGCCAGAATAGTGAGGGCAATAAAGCGGCTTAAACGTTTCTACC
TCAGTTTTTTCTGGCTGAGTAAGTTGAAAGTGAAGATAGCTTTTTCAACC
ATTTTTTATCGGGGCGTGTTTTGCTAATATATCTCCCCCATAGTGGGCTG
GCTTCGGCGGCGAAGAACTCGCCGAGTGTTAGACCAAAAGGATTGGAGTA
AGTGGGAAATTGGTCGCTTACTCATGGTTCTGTTTCTATGGCAATTTTTT
TCTTGTTCCTCGCGCGGACGGACTCAAACGGCACGCACGATTATGATTGA
AAAGTCGAGATGAAAAAAAATGATTATGAAAACTTGTATACTATATTCTA
ATGTGCAGGGGGTTAACACCCTTGTCAAGCAGTTTGACATTTTTCGAAAC
TTGCCAACGTAGGTTGGAGCTCGCTTATGGTGCTACTTCTCGGGCTTATG
ACTTTAGTTTTTCATGCGAGTGGGCTCAAACGGCATGCGCGAATCGTCTG
AAACGGTAAATAAAAAAAGGTGCTCTACAGACAGTTGACTGCTTTACACA
TAGTTACAATGGTTTCTAAAAAACGAGTCCAAGTAGGTTTAGAGCTCACT
TGAGGGTGCTTTTTCTCGGGCTAGTCTTTTCCATTCTTCATGCCGACAGG
TTCAAACGGGGCGCAACATTGTTATCGAATATATTTTTATTAAAAAAACA
CGTTCATGACTATTCTGCAAATTGCAGTGGTTGATGTGCTTAGCGAGCAG
GTCCAACTTTGGAGGAGTTTACTAAAAACATGTTTGTAGCTCACTTACGG
TACTGTTTCTTGAGCTTATGATTCTGTTCCTCACGCAGGTGGGCTCATAC
GGCGAGCAAGACGATAATCGGAAAAAACCAAAAAAAACCCATCGGTTATG
ATATTATCATTCACAGTTACAGTTATTAATGAAAAACACTACTTCAAGGG
TACTGTCCCTAATTTAACACTTGAGGCCGTTCTAAACGTTCGTGTGTTTT
TTTTTTCCCGTTTTTCCCTGCTTTTTTTCTCTTCTCCATCCTCTTTTTTC
TTGTTTTTTTTTTATTTGAAAATTTCAAAAACGAAAAAAGGGCTGTTTCC
TTCAGTATTCCTTAACCCTAGTTCATATTTTTGTTCAATTGTTCCGATAT
AATCTCAGCGTGTTAACGGGAGAAAGAAAAAAAATTTACGAAAAACAAAT
GGGGAAAAAGGGAGGGAAGACTCACGGACAGATTGAATGGGCCTTACCTC
TGGTCTCCCAACTTTCCTAGGCAAACGTTATTTACAGACAGCTAGTTGCC
CAAATCTCTCAGGCAACAGTTGTTTGCAGGCAACTAGAGCGCTAAATAGT
TGCGTAACTCTCTCAACCATTGATTGTCTGCAAATAACCAGTTACCATAC
TTTCTCAAGCAACTGGTTGTTGTTTCCAGGCAAGTTTCTGATTGAACTGC
AGTTGTCCGGGGTGTGAAATGGTTTCGTGTCGAAACTGATGCAGGGTCGG
ATGATCGACACTGTTTTTTTTCTTTTTCTTTTAATTGTACATTCATGTAG
TTTTTTTTGCATTCCAAACACTTACGTCACTCTGTTTTCGTTTTTTCTCC
GGCGCACGTCACATGTGTTCCGAAACTTATTTCAAGTATATGAGCATACC
TTCACCCCCGAGTCTTTCCGCGGTAGAGTGGTGGCCCTTCCGTAAGTGAT
TAGAGAAAAGACTCCCAATTGCGAGCGTAGCGAGCCAGGCGAGCGCAGCG
AGTCCGTGTACGTGGGTGTGCAAGTATCACTGTTTTACATTTGTTTCGAA
GGCGTAGCCGTGGCCTCATTTACCGTAGTTCACATTACATCACCCCCGCG
GTGATAACATTTCGGTGCTTATAAACTGTCACCCAGACTGGTGTACATAC
GGCCATATACGGGACCGTAGACCTGTGGGTAATGATGTACGTCACTTCCG
AAAACCACTTGAATTGTTTTTGTGTTGCTACAACTGTAACCAACATCACA
CTGTAAAAATACTTTTCGCTACATTGAAATTTTCTGCTCTATGTTGCGCC
ATCACACGTTCGTCTCATGGTTATCTTTTTTTTTTTCAAACACGGTGCTA
CTATATATCACGCTTTCTTTCAGTTCGTATATCACCCTCCCCCCCCCCCC
CCCCGCGATTCTAGTAACTGCGACATGCAAACCATATACGCTACCGACCC
AACCACCAATCCACCCGCGTACAGTAGGGCCCCAGACACCACAATCCAAC
TCACCAGCAGAGCCCACGAGCGCATCCGAAGACGAAGGGCACGCTCTGGT
AAGACAAGCAATGCAAGCCGCCGCCGCTGCCGCAGGGAAAACGAGACCGA
GCTCATCTGGCGGCGATAACAGTGGCGACAGTGCTTTATCCTCCGGAAAA
CGGAGAAGACAATCAAGATGGGGAGGCAGGGTTAACGACGATGTCGGTGT
CGACGGCGGTGCTGAAGGGGGCGTTCGCAGTGGTGGAGGGGGGTCGGGGG
CGAGCGGCGGCGCAAGGGAGAAGGAAGAGGAGGCCGACGCAGCGGCAGCG
GCGACCGGGAGTGAGGGGACTGGTGTGAATAGTGCGGCGATGGCGACGAG
AAAGGCTTGGGCGGGAGAGTTGGAGCGGGATCGCACAGCGGAAGATGAAA
TGGATGATTATTTGTCTGCGTTGCTCCTGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3115:4454..8985+

>mRNA_H-paniculata_contig3115.8425.1 ID=mRNA_H-paniculata_contig3115.8425.1|Name=mRNA_H-paniculata_contig3115.8425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig3115:4454..8985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCCTACCAGGGCCAGTTTGAGTGCGGTGCATTGCGGTGCCTTGA
AAGGAGAGACCTGCACAGCTACGAGCTCAACTTTAAGTACAAGGAAGATG
GGGTGGTTAAGAACGAACTCGTCAAGATGGTGGCCTACCAGGGCCAGTTT
GAGTGCGGTGCATTGCGGTGCCTTGAAAGGAGAGACCTGCACAGCTACGA
GCTCAACTTTAAGTACAAGGAAGATGGGGTGGTTAAGAACGAACTCGTCA
AGGTTCGCGTTTGTCCCCAGTGCGCTCGGAAACTGTACCGGAAAAAAATC
GAAGAGTTGCGAGCTCAGAGGCAACGAGAGCAAGAGCTGGCAGACAGGGA
GCGCCGCCGGAGGGTCAAGGCGGGATTGCCCCCGAATGACCACGATCCGG
CGACGTCCACAGGTACCCTATCGTACCGTAGGTTGCTGAAATACGTTCGA
CAGGGAAGGCGTTCGCGTTTGTCCCCAGTGCGCTCGGAAACTGTACCGGA
AAAAAATCGAAGAGTTGCGAGCTCAGAGGCAACGAGAGCAAGAGCTGGCA
GACAGGGAGCGCCGCCGGAGGGTCAAGGCGGGATTGCCCCCGAATGACCA
CGATCCGGCGACGTCCACAGGTACCCTATCGTACCGTAGGTTGCTGAAAT
ACGTTCGACAGGGAAGGCACGAAGGGCACGCTCTGGTAAGACAAGCAATG
CAAGCCGCCGCCGCTGCCGCAGGGAAAACGAGACCGAGCTCATCTGGCGG
CGATAACAGTGGCGACAGTGCTTTATCCTCCGGAAAACGGAGAAGACAAT
CAAGATGGGGAGGCAGGGTTAACGACGATGTCGGTGTCGACGGCGGTGCT
GAAGGGGGCGTTCGCAGTGACGAAGGGCACGCTCTGGTAAGACAAGCAAT
GCAAGCCGCCGCCGCTGCCGCAGGGAAAACGAGACCGAGCTCATCTGGCG
GCGATAACAGTGGCGACAGTGCTTTATCCTCCGGAAAACGGAGAAGACAA
TCAAGATGGGGAGGCAGGGTTAACGACGATGTCGGTGTCGACGGCGGTGC
TGAAGGGGGCGTTCGCAGTGCGGCGACCGGGAGTGAGGGGACTGGTGTGA
ATAGTGCGGCGATGGCGACGAGAAAGGCTTGGGCGGGAGAGTTGGAGCGG
GATCGCACAGCGGAAGATGAAATGGATGATTATTTGTCTGCGTTGCTCCT
GTGACGGCGACCGGGAGTGAGGGGACTGGTGTGAATAGTGCGGCGATGGC
GACGAGAAAGGCTTGGGCGGGAGAGTTGGAGCGGGATCGCACAGCGGAAG
ATGAAATGGATGATTATTTGTCTGCGTTGCTCCTGTGA
back to top