mRNA_H-paniculata_contig11308.842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	1602
Cds size	1599
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11308.842.1	prot_H-paniculata_contig11308.842.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig11308 1906..5034 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928839.2096848-CDS-H-paniculata_contig11308:1905..2440	1622928839.2096848-CDS-H-paniculata_contig11308:1905..2440	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 1906..2440 -
1691480639.8361485-CDS-H-paniculata_contig11308:1905..2440	1691480639.8361485-CDS-H-paniculata_contig11308:1905..2440	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 1906..2440 -
1622928839.2258246-CDS-H-paniculata_contig11308:2482..2811	1622928839.2258246-CDS-H-paniculata_contig11308:2482..2811	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 2483..2811 -
1691480639.84388-CDS-H-paniculata_contig11308:2482..2811	1691480639.84388-CDS-H-paniculata_contig11308:2482..2811	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 2483..2811 -
1622928839.242357-CDS-H-paniculata_contig11308:3443..3938	1622928839.242357-CDS-H-paniculata_contig11308:3443..3938	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 3444..3938 -
1691480639.851319-CDS-H-paniculata_contig11308:3443..3938	1691480639.851319-CDS-H-paniculata_contig11308:3443..3938	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 3444..3938 -
1622928839.2573342-CDS-H-paniculata_contig11308:4794..5034	1622928839.2573342-CDS-H-paniculata_contig11308:4794..5034	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 4795..5034 -
1691480639.8586943-CDS-H-paniculata_contig11308:4794..5034	1691480639.8586943-CDS-H-paniculata_contig11308:4794..5034	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11308 4795..5034 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig11308:1904..5034-
coding sequence from alignment at H-paniculata_contig11308:1904..5034-

protein sequence of mRNA_H-paniculata_contig11308.842.1

>prot_H-paniculata_contig11308.842.1 ID=prot_H-paniculata_contig11308.842.1|Name=mRNA_H-paniculata_contig11308.842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=533bp
GRVGKGSDLGLPREGGAGGGDGVPLAVELVKCEVRMVEVLDRSTTAVQPG
GKQQGDRWNSAGPGGSGSRVSSRRPMTQLQIAIQLRTSTPVTVARLDHRG
GNLVDASAARSTQRTRASPRSPSPFSDPRSPTAGVYPSPCDTAGQQQQPR
AAAASSSRFSTNRRSSSFSDRYGSVAVARQMSGGQGNCNLHDNSASEEGE
IEEDCWDDKDSHALPSEWGMVPKELAAPAAASIGGEAGSTEDVAEIGIDH
LLGLNVLLPSAFPTKARAKSGRMSGPAAEASLNRRFQGANDRGVCSGKKR
QRPTDGDDGDDGGDGDPLVSDRAQEGARCSGHQDGYRGDSNDNDNNNNNN
NNNNNNNNDVHGNAFKAINDDDSGSSQRQERQQQQHRWQQQLQRRPPQQS
VFDAQDGRNQRQPQTVSTRDTNATSHSSSAKYDPRQAKRSRKDPSATATA
VGGDKREWSWGLPWFRRQGLTTPKQKVRGNSSISLSPVPNSDAEDCSVAH
TIVVSGLDGSSSGAHDEEGWEERRGDGIGKEPS

mRNA from alignment at H-paniculata_contig11308:1904..5034-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig11308.842.1 ID=mRNA_H-paniculata_contig11308.842.1|Name=mRNA_H-paniculata_contig11308.842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3131bp|location=Sequence derived from alignment at H-paniculata_contig11308:1904..5034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGGTAGGGAAAGGGAGTGATCTCGGGCTCCCGCGTGAAGGAGGCGC
AGGAGGCGGCGATGGTGTACCGTTAGCCGTGGAGTTGGTGAAGTGCGAGG
TTAGGATGGTTGAGGTGTTGGATCGATCGACAACGGCGGTACAGCCGGGG
GGGAAGCAACAGGGTGATAGGTGGAATAGTGCTGGGCCAGGTGGCAGTGG
TTCGAGGGTGTCGTCGCGTAGGCCAATGACGCAGCTCCAGGTAGGAATGA
TGGGCGGTTGGCTTTTGTCGGGAGGGGGGGGGGAGTTACTTGTGCTTTGC
GTGCCGTAGCTGTCTGACCATTGACTACGCGTCCTCGGGAGGACGAAGCT
GTTGCTCCTATCAGGGCGATTGCCGACGTCCAATCGGTGTATGTGTGGGG
GGAGGGAATAGATCTACTCTGGTTAGTTTGGTCCGCGAGCATGGTGAAGG
CTTTGTGGCAAAGGCGGGAGTCTTGTCTTCAGTTATCGAATGGAAGTGAC
ATGCGCATTGATGCCACATTTTCTCTTGGTTGCGCCACCAACCTGTGTAT
CCTTTTTTCTCGGTGATTGTTGCGTTTGTTGGGCGAAAGAGGGGAGAGCT
AATTGTGGAACCGTTTATCAATATCAGAAAAACACCTCAAGTGTTTTTGT
TGTGTGTCAGTAGATAACACTATCGTATTTAATATTGGTCGAGCGTGCAG
CCAAGTAGCTTAATCGCCGAGGAAAAATATAAGCAGTCGGCCAATATTCT
CTCCCTTCTTCTGTTTGGCCAGATCGACACGAAACAGAACAAATCGACAC
AAAACGAAACGGAATGGAACGAAACGAAGCAGTTGAGTAGCCGTGCTCGT
AACTCCTTTGGCAGTCAGAGAGATGAAAATGACATGTTTGCGCTCAGCGC
CGGAAATGTAGCCTCGTCAATCCTGTGTCTCAACGTGGTCAAATTATTTG
AAACTCATCGAACAAGTCTCAAACGCTTTGTCTACAGTTTATTGTGCGAT
CATTTTGCGCTTGTGCTTGCCGTCACCCACCTACCTCTTATTCCGCTCCT
CGCCCCCTCGCCCCCTCGTCTTCCCTTACACTTCCCCCGCCAATAGATCG
CCATACAGCTTCGGACGAGCACTCCGGTCACGGTGGCCCGGCTCGACCAC
CGCGGCGGGAACCTCGTGGACGCGTCGGCCGCTCGATCAACTCAACGAAC
CCGGGCCTCGCCGCGCTCCCCTTCTCCTTTTTCTGACCCGCGATCCCCGA
CTGCCGGCGTGTATCCATCGCCGTGTGACACCGCGGGTCAACAGCAACAA
CCAAGGGCAGCGGCGGCTTCTTCAAGCCGTTTCTCAACAAACCGCCGTTC
AAGCAGTTTCTCCGATCGGTACGGGTCGGTTGCGGTTGCCCGTCAAATGT
CGGGGGGCCAGGGCAATTGCAATCTTCATGATAACTCGGCGTCGGAAGAG
GGAGAGATTGAAGAGGATTGTTGGGATGATAAGGATAGTCATGCTCTTCC
GTCGGAGTGGGGGATGGTCCCCAAGGAGCTGGCCGCGCCGGCGGCAGCGA
GTATCGGAGGAGAGGCAGGGTCCACTGAAGATGTCGCAGAAGTGAGGGAG
TTGAAAGTGTGGAGGAGGGAGGCTAGGTGTTGGAACTGGGAGATATGAGC
CCCCTTGGAATATGCACAAATATGTTTGGACAAATGACAATACTCGTAGT
ACGATTCAGTGAATGGTATCGGTTGGCTGTACTTTACAGGATATAGTGGC
TTGTGGGGGTGCCCGGGTTGGATATACCAGCGTAGTGCAACGAGTTTAAG
GCTGAAACGAACGATGAGTCCGATAGAGCTATTTAGCTGCCTATCATGTC
TTATCGATCATCTACCGCGGCACTCATGTACATTGGGTTCACAAAAATAT
TGCCATTTTTTTCTTTTTTAACCCCTGGAAGGCTAAGGCAAAACCTTTAT
CCGATGCTTCCATACTTGAGTATTTCTACCAAAGTATTTCTACAGTTCCT
TTAACAGAACAGAGTTATTTATTCCTCTTCGGGGTAGGCGCCACCCCGGT
TCGGCTGAACCAAGTAGGCAGTGTGGGGTTGCATCCGCTCAAAAATATTG
CCATTGGTCAAGTAGTTTCTTTACCTGTTCCAAATAACATATACTATTGT
GTTTGCCCCCTAATGCTCCCGTGTCTTGTTTTTTTCGCCCTTTCTTGTGT
TCTCGAACGCTTTTGCGTTTCAGATCGGTATTGACCACCTTCTAGGCCTC
AATGTCCTTCTGCCCTCGGCGTTTCCGACTAAAGCACGGGCAAAGAGCGG
ACGTATGTCGGGGCCGGCAGCAGAAGCGTCGCTGAATCGTCGGTTTCAGG
GCGCCAACGATAGAGGCGTATGTAGCGGCAAAAAGCGGCAGAGACCTACG
GATGGTGATGATGGTGATGATGGTGGTGATGGTGATCCACTTGTGTCAGA
TAGAGCGCAAGAAGGCGCGAGATGCTCCGGACACCAGGATGGCTATCGTG
GTGATAGCAACGACAACGACAACAACAATAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACATCAACAACAACAACAACAATAACAA
CAACGATGTCCACGGCAACGCATTCAAGGCCATCAACGACGACGATAGTG
GTAGTAGCCAACGGCAGGAGCGACAGCAGCAGCAGCATCGATGGCAGCAA
CAACTACAACGACGACCGCCACAACAGAGCGTGTTCGATGCGCAAGATGG
CCGCAACCAACGACAACCGCAAACCGTCTCAACCCGGGATACCAACGCCA
CCAGCCACAGTTCTTCCGCAAAGTATGATCCCAGACAGGCGAAGAGGAGC
CGCAAAGATCCTTCAGCAACGGCGACCGCGGTAGGGGGGGATAAGCGAGA
ATGGAGCTGGGGATTACCGTGGTTCCGGAGGCAAGGACTAACTACTCCAA
AACAAAAGGTGCGAGGGAATAGTTCTATCTCATTGTCGCCTGTGCCAAAT
TCAGATGCGGAAGACTGTTCTGTCGCGCATACCATCGTCGTCTCTGGGTT
GGATGGTTCCAGTAGCGGAGCGCATGATGAGGAAGGGTGGGAGGAGAGGA
GAGGAGATGGGATCGGCAAAGAACCGTCGTG

Coding sequence (CDS) from alignment at H-paniculata_contig11308:1904..5034-

>mRNA_H-paniculata_contig11308.842.1 ID=mRNA_H-paniculata_contig11308.842.1|Name=mRNA_H-paniculata_contig11308.842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3198bp|location=Sequence derived from alignment at H-paniculata_contig11308:1904..5034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGGTAGGGAAAGGGAGTGATCTCGGGCTCCCGCGTGAAGGAGGCGC
AGGAGGCGGCGATGGTGTACCGTTAGCCGTGGAGTTGGTGAAGTGCGAGG
TTAGGATGGTTGAGGTGTTGGATCGATCGACAACGGCGGTACAGCCGGGG
GGGAAGCAACAGGGTGATAGGTGGAATAGTGCTGGGCCAGGTGGCAGTGG
TTCGAGGGTGTCGTCGCGTAGGCCAATGACGCAGCTCCAGGGGAGGGTAG
GGAAAGGGAGTGATCTCGGGCTCCCGCGTGAAGGAGGCGCAGGAGGCGGC
GATGGTGTACCGTTAGCCGTGGAGTTGGTGAAGTGCGAGGTTAGGATGGT
TGAGGTGTTGGATCGATCGACAACGGCGGTACAGCCGGGGGGGAAGCAAC
AGGGTGATAGGTGGAATAGTGCTGGGCCAGGTGGCAGTGGTTCGAGGGTG
TCGTCGCGTAGGCCAATGACGCAGCTCCAGATCGCCATACAGCTTCGGAC
GAGCACTCCGGTCACGGTGGCCCGGCTCGACCACCGCGGCGGGAACCTCG
TGGACGCGTCGGCCGCTCGATCAACTCAACGAACCCGGGCCTCGCCGCGC
TCCCCTTCTCCTTTTTCTGACCCGCGATCCCCGACTGCCGGCGTGTATCC
ATCGCCGTGTGACACCGCGGGTCAACAGCAACAACCAAGGGCAGCGGCGG
CTTCTTCAAGCCGTTTCTCAACAAACCGCCGTTCAAGCAGTTTCTCCGAT
CGGTACGGGTCGGTTGCGGTTGCCCGTCAAATGTCGGGGGGCCAGGGCAA
TTGCAATCTTCATGATAACTCGGCGTCGGAAGAGGGAGAGATTGAAGAGG
ATTGTTGGGATGATAAGGATAGTCATGCTCTTCCGTCGGAGTGGGGGATG
GTCCCCAAGGAGCTGGCCGCGCCGGCGGCAGCGAGTATCGGAGGAGAGGC
AGGGTCCACTGAAGATGTCGCAGAAATCGCCATACAGCTTCGGACGAGCA
CTCCGGTCACGGTGGCCCGGCTCGACCACCGCGGCGGGAACCTCGTGGAC
GCGTCGGCCGCTCGATCAACTCAACGAACCCGGGCCTCGCCGCGCTCCCC
TTCTCCTTTTTCTGACCCGCGATCCCCGACTGCCGGCGTGTATCCATCGC
CGTGTGACACCGCGGGTCAACAGCAACAACCAAGGGCAGCGGCGGCTTCT
TCAAGCCGTTTCTCAACAAACCGCCGTTCAAGCAGTTTCTCCGATCGGTA
CGGGTCGGTTGCGGTTGCCCGTCAAATGTCGGGGGGCCAGGGCAATTGCA
ATCTTCATGATAACTCGGCGTCGGAAGAGGGAGAGATTGAAGAGGATTGT
TGGGATGATAAGGATAGTCATGCTCTTCCGTCGGAGTGGGGGATGGTCCC
CAAGGAGCTGGCCGCGCCGGCGGCAGCGAGTATCGGAGGAGAGGCAGGGT
CCACTGAAGATGTCGCAGAAATCGGTATTGACCACCTTCTAGGCCTCAAT
GTCCTTCTGCCCTCGGCGTTTCCGACTAAAGCACGGGCAAAGAGCGGACG
TATGTCGGGGCCGGCAGCAGAAGCGTCGCTGAATCGTCGGTTTCAGGGCG
CCAACGATAGAGGCGTATGTAGCGGCAAAAAGCGGCAGAGACCTACGGAT
GGTGATGATGGTGATGATGGTGGTGATGGTGATCCACTTGTGTCAGATAG
AGCGCAAGAAGGCGCGAGATGCTCCGGACACCAGGATGGCTATCGTGGTG
ATAGCAACGACAACGACAACAACAATAACAACAACAACAACAACAACAAA
TCGGTATTGACCACCTTCTAGGCCTCAATGTCCTTCTGCCCTCGGCGTTT
CCGACTAAAGCACGGGCAAAGAGCGGACGTATGTCGGGGCCGGCAGCAGA
AGCGTCGCTGAATCGTCGGTTTCAGGGCGCCAACGATAGAGGCGTATGTA
GCGGCAAAAAGCGGCAGAGACCTACGGATGGTGATGATGGTGATGATGGT
GGTGATGGTGATCCACTTGTGTCAGATAGAGCGCAAGAAGGCGCGAGATG
CTCCGGACACCAGGATGGCTATCGTGGTGATAGCAACGACAACGACAACA
ACAATAACAACAACAACAACAACAACAATAACAACAACGATGTCCACGGC
AACGCATTCAAGGCCATCAACGACGACGATAGTGGTAGTAGCCAACGGCA
GGAGCGACAGCAGCAGCAGCATCGATGGCAGCAACAACTACAACGACGAC
CGCCACAACAGAGCGTGTTCGATGCGCAAGATGGCCGCAACCAACGACAA
CCGCAAACCGTCTCAACCCGGGATACCAACGCCACCAGCCACAGTTCTTC
CGCAAAGTATGATCCCAGACAGGCGAAGAGGAGCCGCAAAGATCCTTCAG
CAACGGCGACCGCGGTAGGGGGGGATAAGCGAGAATGGAGCTGGGGATTA
CCGTGGTTCCGGAGGCAAGGACTAACTACTCCAAAACAAAAGGTGCGAGG
GAATAGTTCTATCTCATTGTCGCCTGTGCCAAATTCAGATGCGGAAGACT
GTTCTGTCGCGCATACCATCGTCGTCTCTGGGTTGGATGGTTCCAGTAGC
GGAGCGCATGATGAGGAAGGGTGGGAGGAGAGGAGAGGAGATGGGATCGG
CAAAGAACCGTCGTAACAACAACGATGTCCACGGCAACGCATTCAAGGCC
ATCAACGACGACGATAGTGGTAGTAGCCAACGGCAGGAGCGACAGCAGCA
GCAGCATCGATGGCAGCAACAACTACAACGACGACCGCCACAACAGAGCG
TGTTCGATGCGCAAGATGGCCGCAACCAACGACAACCGCAAACCGTCTCA
ACCCGGGATACCAACGCCACCAGCCACAGTTCTTCCGCAAAGTATGATCC
CAGACAGGCGAAGAGGAGCCGCAAAGATCCTTCAGCAACGGCGACCGCGG
TAGGGGGGGATAAGCGAGAATGGAGCTGGGGATTACCGTGGTTCCGGAGG
CAAGGACTAACTACTCCAAAACAAAAGGTGCGAGGGAATAGTTCTATCTC
ATTGTCGCCTGTGCCAAATTCAGATGCGGAAGACTGTTCTGTCGCGCATA
CCATCGTCGTCTCTGGGTTGGATGGTTCCAGTAGCGGAGCGCATGATGAG
GAAGGGTGGGAGGAGAGGAGAGGAGATGGGATCGGCAAAGAACCGTCG

mRNA_H-paniculata_contig11308.842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

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