mRNA_H-paniculata_contig31128.8418.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31128.8418.1
Unique NamemRNA_H-paniculata_contig31128.8418.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31128.8418.1 vs. uniprot
Match: A0A6H5J997_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J997_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.590e-36
Identity = 91/151 (60.26%), Postives = 102/151 (67.55%), Query Frame = 1 
Query:    1 TGNGLNELLSSLSFSSIIDRRTQSRIRSIAAMRNKLVHSVDANNLTISNTFGHSARRAFKIMVDDLELSLRESARRKPDASPVLERPPRPPDAYTLGNHPAFRGIGGGALGGLGGVVGNDEALDTFNADAAANATLAAAARKREVEAVVVK 453
            TGNGLNELLSSL     ID RTQ RIRSIAAMRNKLVHSVDANNLT+SNTFG SAR+AFK+M DDLELSLRE A +  +     E+  RP DA+ LGNHPAFRGIGG            DEA     A+AA  A       +RE EA++VK
Sbjct:  571 TGNGLNELLSSLRTDRRIDPRTQQRIRSIAAMRNKLVHSVDANNLTMSNTFGASARKAFKMMCDDLELSLRECAAKVVEEP--FEQAARPADAFRLGNHPAFRGIGGAGXXXXXEDGDYDEAAGIAEAEAAEVA-------RREQEALIVK 712
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BLAST of mRNA_H-paniculata_contig31128.8418.1 vs. uniprot
Match: D7FRG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 8.450e-19
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 TGNGLNELLSSLSFSSIIDRRTQSRIRSIAAMRNKLVHSVDANNLTISNTFGHSARR 171
            TGNGLNELLSSL     ID RTQ RIRSIAAMRNKLVHSVDANNLT+SNTFG SAR+
Sbjct:   78 TGNGLNELLSSLRTDRRIDPRTQQRIRSIAAMRNKLVHSVDANNLTMSNTFGASARK 134
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BLAST of mRNA_H-paniculata_contig31128.8418.1 vs. uniprot
Match: D7FRG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 4.980e-8
Identity = 42/90 (46.67%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:  184 MVDDLELSLRESARRKPDASPVLERPPRPPDAYTLGNHPAFRGIGGGALGGLGGVVGNDEALDTFNADAAANATLAAAARKREVEAVVVK 453
            M DDLEL LRE A +  +     E+  RP DA+ LGNHPAFRGIGG   GG G     +EA     A+AA  A       +RE EA++VK
Sbjct:    1 MCDDLELGLRECAAKVVEEP--FEQAARPADAFRLGNHPAFRGIGGTGAGGAGEDGDYNEAAGIAEAEAAEVA-------RREQEALIVK 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31128.8418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J997_9PHAE1.590e-3660.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG9_ECTSI8.450e-1982.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRG8_ECTSI4.980e-846.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31128contigH-paniculata_contig31128:1130..2255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_000880.1
Exons2
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.464539-CDS-H-paniculata_contig31128:1129..12991622929957.464539-CDS-H-paniculata_contig31128:1129..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31128 1130..1299 +
1691481086.3736506-CDS-H-paniculata_contig31128:1129..12991691481086.3736506-CDS-H-paniculata_contig31128:1129..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31128 1130..1299 +
1622929957.4796836-CDS-H-paniculata_contig31128:1972..22551622929957.4796836-CDS-H-paniculata_contig31128:1972..2255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31128 1973..2255 +
1691481086.38438-CDS-H-paniculata_contig31128:1972..22551691481086.38438-CDS-H-paniculata_contig31128:1972..2255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31128 1973..2255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31128.8418.1prot_H-paniculata_contig31128.8418.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31128 1130..2255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31128.8418.1

>prot_H-paniculata_contig31128.8418.1 ID=prot_H-paniculata_contig31128.8418.1|Name=mRNA_H-paniculata_contig31128.8418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
TGNGLNELLSSLSFSSIIDRRTQSRIRSIAAMRNKLVHSVDANNLTISNT
FGHSARRAFKIMVDDLELSLRESARRKPDASPVLERPPRPPDAYTLGNHP
AFRGIGGGALGGLGGVVGNDEALDTFNADAAANATLAAAARKREVEAVVV
K
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mRNA from alignment at H-paniculata_contig31128:1130..2255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31128.8418.1 ID=mRNA_H-paniculata_contig31128.8418.1|Name=mRNA_H-paniculata_contig31128.8418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-paniculata_contig31128:1130..2255+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGGAACGGGCTGAACGAGCTCTTGTCGTCTCTCAGTTTCTCGAGCAT
CATCGATCGCCGCACGCAGTCCCGCATTCGCTCCATCGCGGCCATGCGCA
ACAAGCTCGTTCACAGTGTGGATGCGAACAACCTGACGATCTCCAACACC
TTCGGACACTCGGCGAGAAGGTAAACAGATGCTGTTTGCCAACCCATCGT
GAAGACCGAGATGTGTACGGGTAGGATATTGTCGGCGCGCCCTTGGACTG
TGTGGTAACAGCAACACACATGGCCCTGTGTAAGGATTGTGCAGGGCAGA
CGGGGCTGTTCTCGAACGAATAGTTCGGAGCTCGCGTGTATTTTGTTGTA
TTGCAGGTTCACACTACGGATGCTGTTTCGAGTTGGATTTGAGTGTTTGT
TTCCCTACAAAAGCTGTTTCGAAGTCACTGTCTTGTCACACATTCAAGCG
GCAATATCTACATGCACCGTCATTTTCCATAAATACTGCCAGCTTCTGCC
ATTGTTTTCCCGAGTACTCAGGGGATCGCAACAAATGACCTGCGTTGGCC
GGCTGGTCATCGTCCACACTGATTGTATCCGTCGTCCTTCTCCTTGATTT
TCGACACCCCTGTAGGAGGGGTATTTGATCGATCAAAATAGGTGGAGATA
TACACAAATTATCTACACAAAACCAGCCAAGACGTGCGTGGATAAGTGGT
ACAGGCATTTATAGATAGTGACATATTAACAGATTTTTTTAGCCATCAGG
TCTGAAATACATATTTTTCGGCAAACATTTATTTAAAGTTGGTGCTACTC
CCATCTTACTTTTGTTCTGTTATTTGCGTGCATATGACAATAGAGCATTC
AAGATCATGGTGGATGACTTGGAGTTGAGCCTTCGAGAGTCAGCGAGGCG
AAAGCCGGACGCCAGCCCAGTCTTGGAGCGCCCCCCTCGCCCCCCCGACG
CCTACACCCTCGGAAATCATCCAGCGTTTAGAGGTATTGGGGGGGGCGCT
TTAGGTGGCCTGGGCGGTGTGGTAGGCAATGATGAGGCTCTCGACACGTT
CAACGCTGATGCTGCTGCTAACGCGACTCTGGCAGCAGCTGCCCGAAAGC
GGGAGGTGGAGGCCGTTGTAGTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31128:1130..2255+

>mRNA_H-paniculata_contig31128.8418.1 ID=mRNA_H-paniculata_contig31128.8418.1|Name=mRNA_H-paniculata_contig31128.8418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig31128:1130..2255+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGGAACGGGCTGAACGAGCTCTTGTCGTCTCTCAGTTTCTCGAGCAT
CATCGATCGCCGCACGCAGTCCCGCATTCGCTCCATCGCGGCCATGCGCA
ACAAGCTCGTTCACAGTGTGGATGCGAACAACCTGACGATCTCCAACACC
TTCGGACACTCGGCGAGAAGACAGGGAACGGGCTGAACGAGCTCTTGTCG
TCTCTCAGTTTCTCGAGCATCATCGATCGCCGCACGCAGTCCCGCATTCG
CTCCATCGCGGCCATGCGCAACAAGCTCGTTCACAGTGTGGATGCGAACA
ACCTGACGATCTCCAACACCTTCGGACACTCGGCGAGAAGAGCATTCAAG
ATCATGGTGGATGACTTGGAGTTGAGCCTTCGAGAGTCAGCGAGGCGAAA
GCCGGACGCCAGCCCAGTCTTGGAGCGCCCCCCTCGCCCCCCCGACGCCT
ACACCCTCGGAAATCATCCAGCGTTTAGAGGTATTGGGGGGGGCGCTTTA
GGTGGCCTGGGCGGTGTGGTAGGCAATGATGAGGCTCTCGACACGTTCAA
CGCTGATGCTGCTGCTAACGCGACTCTGGCAGCAGCTGCCCGAAAGCGGG
AGGTGGAGGCCGTTGTAGTGAAGAGCATTCAAGATCATGGTGGATGACTT
GGAGTTGAGCCTTCGAGAGTCAGCGAGGCGAAAGCCGGACGCCAGCCCAG
TCTTGGAGCGCCCCCCTCGCCCCCCCGACGCCTACACCCTCGGAAATCAT
CCAGCGTTTAGAGGTATTGGGGGGGGCGCTTTAGGTGGCCTGGGCGGTGT
GGTAGGCAATGATGAGGCTCTCGACACGTTCAACGCTGATGCTGCTGCTA
ACGCGACTCTGGCAGCAGCTGCCCGAAAGCGGGAGGTGGAGGCCGTTGTA
GTGAAG
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