mRNA_H-paniculata_contig31118.8416.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31118.8416.1
Unique NamemRNA_H-paniculata_contig31118.8416.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31118.8416.1 vs. uniprot
Match: D7G511_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G511_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.940e-26
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 HMAWQLALFSLERGQERKAIRVFDTILNPPRDGKKGVGPVRLPPPSPLALTGACNILWTMDIFGVETGEERWRGVAE 231
            HMAW L LFSLERGQE +A RVFDT+L PPR+G    G + LPPP+P ALT A ++LW MD+ GVETG  RWRGVAE
Sbjct:  296 HMAWHLGLFSLERGQEARATRVFDTLLAPPREGGTLDGALLLPPPAPFALTDASSLLWRMDLLGVETGASRWRGVAE 372
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BLAST of mRNA_H-paniculata_contig31118.8416.1 vs. uniprot
Match: A0A8B2NNU3_9HYPH (Tetratricopeptide repeat-containing protein n=2 Tax=Acuticoccus sediminis TaxID=2184697 RepID=A0A8B2NNU3_9HYPH)

HSP 1 Score: 49.3 bits (116), Expect = 5.750e-5
Identity = 26/78 (33.33%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:    1 HMAWQLALFSLERGQERKAIRVFDTILNP-PRDGKKGVGPVRLPPPSPLALTGACNILWTMDIFGVETGEERWRGVAE 231
            HMAW LALF LE G + + + ++DT + P P D  +              +  A ++LW +++ GV  G+ RW  +AE
Sbjct:  237 HMAWHLALFHLEAGDDARVLHLYDTEVRPRPTDDFRD-------------MANAVSLLWRLELEGVAVGD-RWEALAE 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31118.8416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G511_ECTSI2.940e-2666.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8B2NNU3_9HYPH5.750e-533.33Tetratricopeptide repeat-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31118contigH-paniculata_contig31118:1110..2271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue8.4e-21
Seed eggNOG ortholog2880.D7G511
KEGG rclassRC02795
KEGG koko:K02325
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
EggNOG OGsKOG2610@1,KOG2610@2759
EC2.7.7.7
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons2
Model size232
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31118.8416.1prot_H-paniculata_contig31118.8416.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31118 1113..2271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.3173873-UTR-H-paniculata_contig31118:1109..11121622929957.3173873-UTR-H-paniculata_contig31118:1109..1112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31118 1110..1112 +
1691481086.3278265-UTR-H-paniculata_contig31118:1109..11121691481086.3278265-UTR-H-paniculata_contig31118:1109..1112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31118 1110..1112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.3289478-CDS-H-paniculata_contig31118:1112..12021622929957.3289478-CDS-H-paniculata_contig31118:1112..1202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31118 1113..1202 +
1691481086.340245-CDS-H-paniculata_contig31118:1112..12021691481086.340245-CDS-H-paniculata_contig31118:1112..1202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31118 1113..1202 +
1622929957.3552194-CDS-H-paniculata_contig31118:2133..22711622929957.3552194-CDS-H-paniculata_contig31118:2133..2271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31118 2134..2271 +
1691481086.3524313-CDS-H-paniculata_contig31118:2133..22711691481086.3524313-CDS-H-paniculata_contig31118:2133..2271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31118 2134..2271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31118.8416.1

>prot_H-paniculata_contig31118.8416.1 ID=prot_H-paniculata_contig31118.8416.1|Name=mRNA_H-paniculata_contig31118.8416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MAWQLALFSLERGQERKAIRVFDTILNPPRDGKKGVGPVRLPPPSPLALT
GACNILWTMDIFGVETGEERWRGVAE
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mRNA from alignment at H-paniculata_contig31118:1110..2271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31118.8416.1 ID=mRNA_H-paniculata_contig31118.8416.1|Name=mRNA_H-paniculata_contig31118.8416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1162bp|location=Sequence derived from alignment at H-paniculata_contig31118:1110..2271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATATGGCGTGGCAACTCGCGCTGTTTTCGCTGGAGAGAGGTCAGGAAAG
AAAAGCCATTCGAGTTTTCGACACAATACTCAACCCTCCCAGGGTAAGCT
GAATGACCTTTGCGCGTTGAACTGGATACCAAGTACAGTGTATGCCAAGG
TGAACGCTGACGCTAAGGCCATGTATGGACCCTTTAGAAAATTCTGACTG
CCTATCCAGTTTTGGAGTTCTTGTCTATTGTTTGGCCGTTACGAGAAACA
TGGTGCGTGCTCGTTCTCGCCCTGCACTACATCCAGCGTAAATCCCCCCC
CAATAAACAACGACAGAAAAACGACTCCTTTGGCACCTGATATTGCACTG
ACTAGCTACCGAAAGCTGGTTGAGCATTTTCGGTCAATGTGTCCATCATT
ACTCACAACTGATCGTTAAATTGAGAATATATGTATATATATATATTGAC
CTTTATTAAGTCTGGGTTATCGTTAGTACTTGATTAATACGTGCACGCTC
TAAAGCGATGTTATTATGATTGTTTTGAACATCTAATTTGTTCTCACCAA
CAGTGCAGAATGAATGTTTACATATATATACGTTAAAACATCAACTTGGT
TTCGACTTTTGTTTTTTTAGGACGGTGTGATTTCTTGTTCCCGTATTTTT
ACGGTTGCTGTATACAATGTAGCTGATATACCCACATGGATAACTTTCTG
GTGACAAAAAAGTGGTTTATGCTTGGGCAATTAAGAGACATCCAGTCGTA
TTTTCCCTCGTGACCTTGGTGTCTACCGGAGAATTAACAATATTTCATCT
CATTGACGCTTTCGGCATTGACAGATTTCATTCGTCAATGGTCATCATCG
ACTGTCGCGCACCGTGAATCATATTCTAGCCCTCACGGCGACTCAGTACT
TGGTCCTACTCGCCGACTCCCCCGGGTTCAAAAGGTGCTTTTGCCCCGCC
GCGGAACCCAGTCAGTGTGAGTGAGAAACGTTGCCTCTTTTGTGACTGCT
TTCCTGAAACGGACGATAATACAGGATGGCAAGAAAGGGGTAGGACCCGT
TCGACTGCCTCCGCCGTCGCCACTGGCTCTCACGGGGGCGTGCAATATTT
TGTGGACGATGGATATTTTTGGGGTAGAGACAGGAGAAGAGCGGTGGCGA
GGAGTTGCCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31118:1110..2271+

>mRNA_H-paniculata_contig31118.8416.1 ID=mRNA_H-paniculata_contig31118.8416.1|Name=mRNA_H-paniculata_contig31118.8416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig31118:1110..2271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTGGCAACTCGCGCTGTTTTCGCTGGAGAGAGGTCAGGAAAGAAA
AGCCATTCGAGTTTTCGACACAATACTCAACCCTCCCAGGATGGCGTGGC
AACTCGCGCTGTTTTCGCTGGAGAGAGGTCAGGAAAGAAAAGCCATTCGA
GTTTTCGACACAATACTCAACCCTCCCAGGGATGGCAAGAAAGGGGTAGG
ACCCGTTCGACTGCCTCCGCCGTCGCCACTGGCTCTCACGGGGGCGTGCA
ATATTTTGTGGACGATGGATATTTTTGGGGTAGAGACAGGAGAAGAGCGG
TGGCGAGGAGTTGCCGAGGATGGCAAGAAAGGGGTAGGACCCGTTCGACT
GCCTCCGCCGTCGCCACTGGCTCTCACGGGGGCGTGCAATATTTTGTGGA
CGATGGATATTTTTGGGGTAGAGACAGGAGAAGAGCGGTGGCGAGGAGTT
GCCGAG
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