mRNA_H-paniculata_contig3111.8414.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3111.8414.1 vs. uniprot
Match: D8LB35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB35_ECTSI) HSP 1 Score: 348 bits (894), Expect = 3.850e-103 Identity = 308/868 (35.48%), Postives = 416/868 (47.93%), Query Frame = 2
Query: 254 MAALPTYGLGGVSVPERVVQEWKRRQHFTLPQEVNPHTGEILPPATIAGTDGNEVGTTIGGSGSIDRVDSRPPAGTVEVGKLLRRIRKMAPEDERGAWLLNNLLSKQKSVEQKTEICRFVLEKLHNRPDVLARMKDRRKLECDRRCVFAKAANEVRTSSELMAKTNRFNVLAIIVKDHPIAK---DRCRERCR-----NATAVDAPAASAATEATLNPKETLRQTKRTFDQQALPQRWTASCEHHGKVTPGKQTEQSKKSLHSAVPPEYSHD--------------------GCATPTPCNPSTASSHTHRSASPRK------RSSSNTTCPEQRRFVSGAHAPP----APM-MGQAGGFHPGPQKP----GQFSLPPFDKRYGIGVVDSWVQSPVALRIGRPRPGSVSVMSLDRDALFECAEEAMR------RGEALKDKRDREDAIPTEKIEGAKSTTTSDLGLRPVKTEEIHTSILVSDSRQNGGDSASRSCAIPNV-FANSIS------RAPLGITKILARSASRHSSDD--GQQSRDSVETLTSRSLLYRNH----CKMA-ADPLAVAVELGFRSNEARTVFRQTHRLLEAMRTPARSL------GA--SCLNGNHTAKATEHANEDSSDMIMHKHVTLQGKER-----RRKRGGGAGVAPPGTMDALHWSDDMDLDINGGVWREASKAGDRAARLAEVFQCIRPPHTVRLESEIILHDITARVEDSSGGGAGDDGWGADDTDECATGAQVGTADDFVHMWELLGDGVLAERALAAYWEFVFR-GDRSASLAAREEYAADDLLSARLLKALLFTQCYRSPGPRQKFDEWLDELLDTIRTHVRWACLKLPAQYGLTAGVEWFQQ 2626
+ L T+ L GV VP+ V++EW+RR+ P E + + + +A G EV IGG S S P T+ + LRRI+KMAP DERG WLLNNLLS Q VE + E+C V +KL R L R KDR KLECDRRCVF +A NEVRT+S + A+ NR N+LA +VK+H A+ D+ R + N+ A AP A +T A ++ + K ++ + + + E G + K+ PPEY G AT T + T + R +S P + G P AP+ +G+ G +KP G+ LP +RYG V+++WVQSPVAL++ RPR SV++ LD+ A E E +R R + RD D + + + G TT+D G+ +E T++ S + A S P + S S + G T H DD G+ R + TLT + H K+A AD + + LG RS AR VF+QT RLLEA+RTP+ S GA +C GN S +++H H + G R RGGG + +SD G+WR + G+R+ARL EV C+ PPHTVR+E EIILH+ +R D G G G G GT DDFV WE LGDG+LA RAL+ YWE + G R + AADDLLS L++ALL T+CYR PG Q F EWLDELL+ +RTHVR ACL++P Q+GLTAG+EWFQ+
Sbjct: 21 LPTLRTHSLDGVVVPDSVLKEWRRRKGLGAPAE------QAVQQSAVAKGGGTEV--AIGGRFSSPA--SPRPGATLS--RCLRRIKKMAPLDERGMWLLNNLLS-QTRVEDQEELCWSVQDKLSKRKGALIRSKDRLKLECDRRCVFTRATNEVRTTSAMTAQANRCNILATVVKEHQNARRSNDQSRRHRQPPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAREIISLNEKEGS-----NDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVAAGGDATLPRRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAEGAPVAVGKTRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVALKLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGVG-QGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCHVEPRAFNSQNPPKISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTKTTSHAPGHGSDISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRTPSESCQYDPETGARRNCGGGNIGGH---------SSVVVHYHQSHSGSGPATVGDRLHRGGGGDPGGDAKVTDPKFSD-------SGMWR--APRGNRSARLKEVLDCVAPPHTVRIECEIILHESLSRAGDRREGNGGTSGGGGS-----------GTWDDFVFAWECLGDGILAGRALSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVEWLDELLEVVRTHVRRACLRVPVQHGLTAGLEWFQE 840
BLAST of mRNA_H-paniculata_contig3111.8414.1 vs. uniprot
Match: A0A6H5KQT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT4_9PHAE) HSP 1 Score: 155 bits (393), Expect = 4.790e-36 Identity = 142/447 (31.77%), Postives = 194/447 (43.40%), Query Frame = 2
Query: 1241 QFSLPPFDKRYGIGVVDSWVQSPVALRIGRPRPGSVSVMSLDRDALFECAEEAMRRGEALKDKRDREDAIPT-----EKIEGAKSTTTSDLGLRPVKTEEIHTSILVSDSRQNGGDSASRSCAIPNVFANSISRAPLGITKILARSASRHSSDD--GQQSRDSVETLTSRSLLYRNHCK-----MAADPLAVAVELGFRSNEARTVFRQTHRLLEAMRTPARSLGASCLNGNHTAKATEHANED---SSDMIMHKHVTLQGK-----ERRRKRGGGAGVAPPGTMDALHWSDDMDLDINGGVWREASKAGDRAARLAEVFQCIRPPHTVRLESEIILHDITARVEDSSGGGAGDDGWGADDTDECATGAQVGTADDFVHMWELLGDGVLAERALAAYWEFVFRGDRSASLAAREEYAADDLLSARLLKALLFTQCYRSPGPRQKFDE 2521
+ LP +RYG V+++WV SPV+L++ RPR SV++ LD+ A EE +R G A +R R+ + + + G TT+D ++ ++ S R + S PN+ + G T H DD G+ R + TLT H + AD + + L RS AR VF+QT RLLEA+RTP+ ASC T + S +++H H + G R RGGG + +SD GG+WR + GDR+ARL EV C+ PPHTVR+ESEIILH+ +R D G G G+ GT DDFV WE G R + AADDLLS L++ALL T+CYR PG Q F E
Sbjct: 205 RLGLPSISERYGASVIENWVLSPVSLKLERPRCKSVAIAHLDQPAYRAYMEEIVRVGAAQTRRRWRQSTLDDTDGVGQGVTGCWKGTTNDCSNILTNQQQGKAAVGWSSHRCDVEPRVFNSKRPPNIGGGG--KGMFGRTSCEMEKGLPHGEDDERGELGRTRLSTLTKTPSRAPGHGRDSSTIATADEILTSEGLELRSKGARKVFKQTQRLLEALRTPS----ASCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVRDRLHRGGGGDPDGDAKVTDPKFSD-------GGMWR--APRGDRSARLKEVLDCVAPPHTVRIESEIILHESLSRAGDGREDNEGTSGGGS------------GTWDDFVFAWE--------------------DGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVE 604 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3111.8414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3111.8414.1 >prot_H-paniculata_contig3111.8414.1 ID=prot_H-paniculata_contig3111.8414.1|Name=mRNA_H-paniculata_contig3111.8414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=831bp MLQSSSALELGQARAIAGTDTPSVLTPSKFRRDKRFKKPTMAALPTYGLGback to top mRNA from alignment at H-paniculata_contig3111:2995..8862+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3111.8414.1 ID=mRNA_H-paniculata_contig3111.8414.1|Name=mRNA_H-paniculata_contig3111.8414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5868bp|location=Sequence derived from alignment at H-paniculata_contig3111:2995..8862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3111:2995..8862+ >mRNA_H-paniculata_contig3111.8414.1 ID=mRNA_H-paniculata_contig3111.8414.1|Name=mRNA_H-paniculata_contig3111.8414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4986bp|location=Sequence derived from alignment at H-paniculata_contig3111:2995..8862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |