mRNA_H-paniculata_contig3110.8412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3110.8412.1 vs. uniprot
Match: D7FJE8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE8_ECTSI) HSP 1 Score: 281 bits (720), Expect = 1.020e-75 Identity = 192/430 (44.65%), Postives = 244/430 (56.74%), Query Frame = 2
Query: 620 MEQRVLPPDVRIKIAVAQANAGEDREEKMEADMKRLDGLVRTLALYAILERRSIAPSKTADRIAPDRVRVLGKMLVAAVQLELFQMLDEICETGDMENELFDDLCCDTIQEGRRNGFVMLTPEVLLSPGSGYKRLLQIRKDQFVEEIADVAGIRGLAGHDCNKSPTNSE-------GSTENKAGVNSKCDSP--TGGSNSYHVHDHADGGNSNVD-MSPS----------------GHRRTHTQRVQDLLNRVDGLVDDVAQSSEEQATLNALADLPPLSPSGLTWRRSGSGGGDSSSMRSGTRSHRSGVTISSGGVLVSLGDGHAHRVSSADGTSGTSSREQHDQQQRAFFPDEGN------------DAHPCSDPFALAEGRFHPPPLPAETSTQSRLLSEVDWLIAGTLAALGDEELESHPALTPTK 1795
ME+RVLPP++R+KI AQANA E+ EE++EAD+KRLDGLVRTLALY ILER S+ S T+D++ PDR R LGKMLVAAVQLELF+MLD+ICE GD+ENELFDDLC DTIQ+GRR+GF+ +T E+LLSPGSGYKRLLQ+RKDQ +EEIADVAG+R L GHDC +S + S G + A ++S C SP G + ++N+D SPS GHRRT TQRV+DLL+ +DGLV Q SEE AL +P L+P+G + + + + +RS R S+G V G + + G H RAFFP+E + ++ LL+EVDWLIAGT AALG + TP K
Sbjct: 1 MEERVLPPEIRLKIVFAQANAVEEEEERLEADVKRLDGLVRTLALYGILERDSM-DSTTSDKLTPDRERELGKMLVAAVQLELFRMLDDICEAGDVENELFDDLCADTIQDGRRSGFIFMTVELLLSPGSGYKRLLQLRKDQILEEIADVAGLRALGGHDCQRSSSESSARGSPSHGLRKRVAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLV----QESEE-----ALTGMPSLAPNGANENGAAAXXXXAGRGSAPSRSVRGFKRQSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSD--RAFFPNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALGVGNTKHTLEETPDK 418 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3110.8412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3110.8412.1 >prot_H-paniculata_contig3110.8412.1 ID=prot_H-paniculata_contig3110.8412.1|Name=mRNA_H-paniculata_contig3110.8412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1581bp MQRSRMSILGHHTTSEAPPTPLQQQSEEFSVAASQQLASVGSFLSHVVTPback to top mRNA from alignment at H-paniculata_contig3110:1204..14901- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3110.8412.1 ID=mRNA_H-paniculata_contig3110.8412.1|Name=mRNA_H-paniculata_contig3110.8412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13698bp|location=Sequence derived from alignment at H-paniculata_contig3110:1204..14901- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3110:1204..14901- >mRNA_H-paniculata_contig3110.8412.1 ID=mRNA_H-paniculata_contig3110.8412.1|Name=mRNA_H-paniculata_contig3110.8412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9486bp|location=Sequence derived from alignment at H-paniculata_contig3110:1204..14901- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |