mRNA_H-paniculata_contig3109.8408.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3109.8408.1
Unique NamemRNA_H-paniculata_contig3109.8408.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: D7FUW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUW1_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 9.910e-79
Identity = 125/144 (86.81%), Postives = 131/144 (90.97%), Query Frame = 2 
Query:  194 LVMVAFICACAATGKNSGGGSASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDEKPADRAFAAXCFFLWIVYTAFAGMLAVFREDIIMDDSTKYEDDPVPEVSTQPPIGV 625
            +VMVAFICACA+   + G GSASLGFAA+WTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVV IMSQTMLVLFAVFAGRAST  D DEKPADRAFAA CFFLWIVY+ FAGMLAVFREDIIMDD+TKYEDDPVPE S QPPIGV
Sbjct:    1 MVMVAFICACASAAHSDGDGSASLGFAAVWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVIIMSQTMLVLFAVFAGRASTAEDVDEKPADRAFAAFCFFLWIVYSTFAGMLAVFREDIIMDDTTKYEDDPVPEASGQPPIGV 144
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: A0A836CM66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM66_9STRA)

HSP 1 Score: 210 bits (534), Expect = 7.970e-66
Identity = 111/163 (68.10%), Postives = 129/163 (79.14%), Query Frame = 2 
Query:  110 MSLRNALCAPCDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSG----GGSASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDEKPADRAFAAXCFFLWIVYTAFAGMLAVFREDIIMDD--STKYE 580
            M +R+ +CAPC +NPQKAIAYAWFTSI+LV +AF+CAC A  K  G     GS SL FA+IWT LLLI L +GGS+VMR+YRTSLAVGFFLGVV IMSQ ML+LFAVFAGRA  T++  EKPAD AFAA CFFL++VYT FA MLA+FR DII D   STKY+
Sbjct:    1 MGIRDNVCAPCARNPQKAIAYAWFTSIILVAIAFVCACVAASKQEGVDAVKGSKSLAFASIWTALLLILLCIGGSMVMRRYRTSLAVGFFLGVVIIMSQQMLILFAVFAGRAEDTTNDSEKPADSAFAAFCFFLFVVYTGFAIMLAMFRADIIADTNTSTKYD 163
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: A0A7S2V157_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V157_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.280e-51
Identity = 89/172 (51.74%), Postives = 117/172 (68.02%), Query Frame = 2 
Query:  113 SLRNALCAPCDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSG-GGSASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDEKPADRAFAAXCFFLWIVYTAFAGMLAVFREDIIMDDSTKYEDDPVPEVSTQPPIGV 625
            S  + LC PC KN +K I Y WFTS+  V +AFI AC AT + S  G + +LGFAAIWTVLL++ L +GGSLVM+K++TSLA+GFFLGVV +MSQ  L+LFA+FAGRA  T  + E  AD+  A+ CFFL+++Y  FA +L  FR+D+I D      D+     S  PP G+
Sbjct:    3 SFHDTLCGPCAKNARKTITYTWFTSLAFVAIAFIIACVATSRISAEGDNRALGFAAIWTVLLMVALGIGGSLVMKKFQTSLAIGFFLGVVIMMSQQCLILFAIFAGRAGATDSESESSADKGMASFCFFLFLIYGFFASVLGYFRKDLIRDADAMSADE-----SQMPPQGM 169
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: A0A6V1N1N4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N1N4_HETAK)

HSP 1 Score: 153 bits (386), Expect = 1.620e-43
Identity = 81/148 (54.73%), Postives = 104/148 (70.27%), Query Frame = 2 
Query:  116 LRNALCAPCDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSGGGS-ASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDEKPADRAFAAXCFFLWIVYTAFAGMLAVFREDII 556
            + + LC  C +NP K I Y W  S+ LV ++FICAC A  K S  GS  ++GFA ++TVLL+I LSVGG+ V+RKY+T LAVGFFLGVV +MSQ  L++FAVFAGRA  T+   E  AD A A  CF L++VY  FAG+LA FR D++
Sbjct:    4 IHDTLCVHCARNPDKTIQYTWLASLALVAISFICACVAASKISTEGSNTAIGFAGVYTVLLMILLSVGGTFVLRKYKTPLAVGFFLGVVLMMSQQCLIIFAVFAGRAGVTTLSSEIGADNAVAFFCFVLFMVYGFFAGVLAFFRNDLM 151
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: F0YCM6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCM6_AURAN)

HSP 1 Score: 124 bits (312), Expect = 5.470e-32
Identity = 69/160 (43.12%), Postives = 100/160 (62.50%), Query Frame = 2 
Query:  137 PCDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSGGGSASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDE---KPADRAFAAXCFFLWIVYTAFAGMLAVFR--------EDIIMDDSTKYED 583
            P     ++ +AYAWFTSI+LV+ +F  A     ++ G G+  LGFAA+WT +L + +SVGG++VMRK++T  A+G FLGVVT+M+   L++ A+F G+ S   D+D+   K AD  F    FFL++VY  FA +LAVFR         D+I +DS    D
Sbjct:   17 PARARARRFVAYAWFTSILLVLASFFAAAVVADRHRGKGTGGLGFAAVWTTILCLFISVGGTVVMRKFQTGFAIGIFLGVVTVMANQCLMMVAIF-GQWSGNEDEDKESKKAADDTFTTFSFFLFVVYAFFASLLAVFRASFGACFGNDLIKEDSVASTD 175
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: A0A482RX29_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX29_9ARCH)

HSP 1 Score: 103 bits (258), Expect = 1.210e-24
Identity = 52/110 (47.27%), Postives = 80/110 (72.73%), Query Frame = 2 
Query:  239 NSGGGSASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDK-DEKPADRAFAAXCFFLWIVYTAFAGMLAVFREDIIMDD 565
            +S GG  + GF A+WT +LLI +SV G+++MR+Y+T+L++GF +G++ IM+Q ML+LFAVFA +A+ + +   E  +  A A   FFL++VY AF  ML+VFR+D+I  D
Sbjct:    2 SSKGGDGAAGFMAVWTCILLIVISVIGTVIMRRYQTALSIGFLIGIIFIMTQQMLILFAVFADQANNSGNTLVETQSQEAMAVFAFFLFLVYAAFGSMLSVFRQDVIKQD 111
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: D7FX95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX95_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.440e-24
Identity = 56/158 (35.44%), Postives = 94/158 (59.49%), Query Frame = 2 
Query:  143 DKNPQKAIAYAWFTSIVLVMVAFICAC--AATGKNSGGGSASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDEKPADRAFAAXCFFLWIVYTAFAGMLAVFREDII-------MDDSTKYEDDP 589
            DKNP K ++Y+W+  ++   V  + A   A+T  +S  GS +  FA++WT+ +++G+SV G+++++KY T LAVG  LG+ T+MSQ M VLFAVF   A    +      DR  A   FFL+++Y  F+ +L  +R  ++        +D  +++D+P
Sbjct:   18 DKNPSKVVSYSWYLVLIFAAVDVLVALINASTNDSSANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSNDEGEWQDEP 175
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: A0A8K1CCX0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCX0_PYTOL)

HSP 1 Score: 102 bits (255), Expect = 4.290e-23
Identity = 68/179 (37.99%), Postives = 98/179 (54.75%), Query Frame = 2 
Query:   80 DGRKSTPSVTMSLRNA----LCAPCDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSGGG---SASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTT-SDKDEK-------PADRAFAAXCFFLWIVYTAFAGMLAVFREDIIMDDST 571
            +   ++ S+TM ++ A        C  NP+  I Y WFT+++   +  + A  A   N G G   S SLGF  IW + L++GLSVGG+LVMRKY+T LAVGFF+GVV +M+  M  L  +FAG A     D+D          ++ A A   FF++++Y AF  +L   R  II +  T
Sbjct:   26 ESHPASSSLTMPIQAAEAREKARACCNNPKILITYLWFTTLIFGFMYALAAIVAAVNNGGSGISSSKSLGFVGIWAMFLIVGLSVGGTLVMRKYQTPLAVGFFIGVVIMMAFQMFSLCVLFAGAAYLARQDRDANHNENVSVTSNDAGAVFSFFMFVLYIAFGVVLIKNRNVIIKESGT 204
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: A0A024G516_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G516_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.400e-23
Identity = 66/171 (38.60%), Postives = 96/171 (56.14%), Query Frame = 2 
Query:  140 CDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSG---GGSASLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDEKP----------ADRAFAAXCFFLWIVYTAFAGMLAVFREDIIMDDSTKYEDDPVPEVSTQP 613
            C +NP+  + Y WF+++V+  +  I A  A  +NSG     S SLGFA IW ++L+IGLSVGG+LVMRK++T LAVGFF+GVV +MS  M  L  +F G +     K+E+            + A A   FF++ +Y  F  +L   R  +I +  +  E  P P +S  P
Sbjct:   15 CGENPRLLVTYLWFSTLVVGFMYAITAIVAAVENSGRNLSDSKSLGFAGIWAMILMIGLSVGGTLVMRKFQTPLAVGFFIGVVIMMSFQMFSLTVLFVGESYLA--KEERTLFNKTDTNIHTNEAAAVFSFFMFTLYAIFGAVLVKHRSIVIREVPSTTEKLP-PIISASP 182
[Close]
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Match: A0A5D6YEA3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEA3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.920e-23
Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 2 
Query:  140 CDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSGGGSA---SLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVLFAVFAGRASTTSDKDEKP-------ADRAFAAXCFFLWIVYTAFAGMLAVFREDIIMDDST 571
            C  NP+  I Y WF ++V   +  + A  A   N+G G A   SLGF  +W + L+IGLSVGG++VMRKY+T LAVGFF+GVV +MS  M  L  +FAG A     + +K        ++ A +   FF++++Y AF+ +L   R  II +  T
Sbjct:   15 CCTNPKLLITYLWFITLVFGFMYALAAIVAAVNNNGSGEADSKSLGFVGVWAMFLIIGLSVGGTMVMRKYQTPLAVGFFIGVVIMMSLQMFTLSVLFAGAAYLARQERDKGNTSVSVHSNDAGSIFSFFMFVLYLAFSIVLIKHRNVIIKEGVT 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3109.8408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUW1_ECTSI9.910e-7986.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CM66_9STRA7.970e-6668.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V157_9STRA3.280e-5151.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1N1N4_HETAK1.620e-4354.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YCM6_AURAN5.470e-3243.13Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482RX29_9ARCH1.210e-2447.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FX95_ECTSI1.440e-2435.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1CCX0_PYTOL4.290e-2337.99Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G516_9STRA8.400e-2338.60Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A5D6YEA3_9STRA8.920e-2340.26Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3109contigH-paniculata_contig3109:9751..16437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.0
Seed ortholog evalue1e-61
Seed eggNOG ortholog2880.D7FUW1
Hectar predicted targeting categorysignal anchor
EggNOG OGs2B4VH@1,2S0HS@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004410.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size680
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3109.8408.1prot_H-paniculata_contig3109.8408.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3109 13005..16385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.2808-UTR-H-paniculata_contig3109:9750..98431622929956.2808-UTR-H-paniculata_contig3109:9750..9843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3109 9751..9843 +
1691481085.813526-UTR-H-paniculata_contig3109:9750..98431691481085.813526-UTR-H-paniculata_contig3109:9750..9843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3109 9751..9843 +
1622929956.2972753-UTR-H-paniculata_contig3109:12988..130041622929956.2972753-UTR-H-paniculata_contig3109:12988..13004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3109 12989..13004 +
1691481085.82446-UTR-H-paniculata_contig3109:12988..130041691481085.82446-UTR-H-paniculata_contig3109:12988..13004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3109 12989..13004 +
1622929956.3653457-UTR-H-paniculata_contig3109:16385..164371622929956.3653457-UTR-H-paniculata_contig3109:16385..16437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3109 16386..16437 +
1691481085.8613834-UTR-H-paniculata_contig3109:16385..164371691481085.8613834-UTR-H-paniculata_contig3109:16385..16437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3109 16386..16437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.3147683-CDS-H-paniculata_contig3109:13004..131811622929956.3147683-CDS-H-paniculata_contig3109:13004..13181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3109 13005..13181 +
1691481085.833095-CDS-H-paniculata_contig3109:13004..131811691481085.833095-CDS-H-paniculata_contig3109:13004..13181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3109 13005..13181 +
1622929956.330391-CDS-H-paniculata_contig3109:15736..159741622929956.330391-CDS-H-paniculata_contig3109:15736..15974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3109 15737..15974 +
1691481085.8424373-CDS-H-paniculata_contig3109:15736..159741691481085.8424373-CDS-H-paniculata_contig3109:15736..15974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3109 15737..15974 +
1622929956.3476262-CDS-H-paniculata_contig3109:16281..163851622929956.3476262-CDS-H-paniculata_contig3109:16281..16385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3109 16282..16385 +
1691481085.8520668-CDS-H-paniculata_contig3109:16281..163851691481085.8520668-CDS-H-paniculata_contig3109:16281..16385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3109 16282..16385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3109.8408.1

>prot_H-paniculata_contig3109.8408.1 ID=prot_H-paniculata_contig3109.8408.1|Name=mRNA_H-paniculata_contig3109.8408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MSLRNALCAPCDKNPQKAIAYAWFTSIVLVMVAFICACAATGKNSGGGSA
SLGFAAIWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVTIMSQTMLVL
FAVFAGRASTTSDKDEKPADRAFAAFCFFLWIVYTAFAGMLAVFREDIIM
DDSTKYEDDPVPEVSTQPPIGV*
back to top

mRNA from alignment at H-paniculata_contig3109:9751..16437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3109.8408.1 ID=mRNA_H-paniculata_contig3109.8408.1|Name=mRNA_H-paniculata_contig3109.8408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6687bp|location=Sequence derived from alignment at H-paniculata_contig3109:9751..16437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCCGCGAAGCAAGCCAAAGTTATCGAGCTTCTACATCATCGTTTGCC
CGGAGAGCTAGGAAGGATCCACCTCATTAGACGGCCGCAAGAGGTATGCG
TGAATAAGACCTTCAGGGACAAATGCTTAGCGGTAAAAGGCGGAAAATGC
AGCAAGGCTGGTAATAAATGGTCATGGTTCCGTCTTGTCTGCATGACCTT
GTAAACGAATAGAAACGGCAGTGCTGAACAAAACCCAACCATTGAGCAGT
TGGGGAACGCCTGAGGTTCTAGCTCTACGTTGCACAACCCACAGCAGCCG
ATCATGTGCCGTTGCGTAGTTGCTATGCCTTTGTTTAGGTCGAACATCTT
CTTCTCGGTATTGCCATGCACAATGTTCAGCTTATGTTGGTGTTGGGTTT
GATCGCCAAGTCTGCCAAAATGTTCTGTGTGTTCGGACCAAACAGGAGAA
GAGATTTCGGTTTGGGATTATTGATTATTGTCTGTTTGGGGGTCCTGCTT
TTATCTCTTTTTCTACATATATAGCCCCCCGCTGGACACGTCAAGGACAC
CAGCCAACCGCATGTCTCTCTCTCTCTCTCTCTGTACCTCTGCATCCCAA
TGCTGCAGTTTACCACCCTGGTACTTGGAGGCCGTTGTGGTCGGGTATCA
AAGGTTCATACTTCTGAGCCATATCTTGTTGTCTCTGTTTCTTGTCTTGG
AGCATAACAGCTGCTCTCGTGATTTTTTTGCCGTGATGGCCCACCCGCAG
TCTGTCTTTTGCTTCTTTCGTGAATTTTTGAAAGTTGTCAACTCAGTCGT
GAAGGGCGTGTTGTGACCGTTTGCGTTGGTCACCCTTTCAACTGTGAAAA
GTAATTTTGATCAAAGAGGCGGTGTCTGCTGTGCGGTTAACCACCGTGTG
GAAGGTACATTATCTTACATGAATCACGGGATGTGCCTCTGCAGCCTTCG
CAGTATTTGCTTACAAAGAAAGATCAGTCAAGCTTATTTACCACACTCTG
TTTTTTCTGAAACTATACCATAATAATGTAGCCATTTCGTGGGTTGGCAA
TGTCTCTCGATTTAGCTGCACGTCCAAGCTCTCGCTGGTTTTGTGGGTTG
ATGTCGGGCGCCCCCGTCATTTAAATGCCGCAATCGCTACACCACTATCA
CCAACCCGGCATCAAGAAGCTATTTTTTATATGGGCGAAGCTGGTCTGTA
TCTGGGCAAGAATAACCATGACTATTTTCTATTTATTAAATAACGAAGGC
TTTTTTATATCAGGAATTACTGCGATGGGTGAGCACATGATCTTACAGGA
GGGCAGTTCCCGGAAAAAGAAAAGGAAAGAAAAGAGCTTGTCCCTTGTCG
GGGGGCGCTTATTATGGAAGAGGGTAGCTGTGCATACGCTGACAGTTTTG
GGTGCTGATCTTGGCTCAATCCTTGCCTACTTTCTACCTGAAAGATAGGG
TAATGTAACGCCTGTTACTATATGCACCGCTGTGCGGACAATTTGTTCAG
CACACCCATGAATTAGATACAGCAGCAGCTGCCGTGACCAGCAGAGAAGC
AGGGAGTTGGTACTTTTCTGCACACAAGGGCTTCTGCACCTCACATTTCG
TTTTTCTTCCTAAACGGCCTTTGACACCCAAAAAGGTAACGGTTTTATTA
CAAAGAAAACCAAACACTGACTGGGCAGTCAACGTCTGATGATAGAATCA
GATTTGCCAGTTGACCATCATGTTATTCGCCCGCTAACTATTGCAAAATT
CAATTCGTTTTTGGTACGGTTCTTAGCTTTTCGTCAGAGGTGACGGTTAT
TACTGTCCTACGCCAACTGTAATGCTGCAGTGCATAGGTTGTTGGTTAAG
TGCGGGGATGAGAGTAAGAAATCACTGCATACAAGTTGGGCCGACCAAGA
AACCCAGATTGTTTCGGACGATCGTATCTTCTCGACTAATGCGATTTATC
TCAAAAAGAAAGCATTGTTACTATCGGTCAATCAACGCGCATGTGCAGAG
CCACGTGCCTCGCCCATTGAAATCGATTCTACAAATTTGAGGTTAGCTGC
CGAACCACTATGTAAATGTTGGTGTTGAAACCGTTTTATTTTTGCGGCGC
AATTAAAATCATGCCACATTGAAGTGCGCGGATCAGGGACACCCGAAGCC
CATGCGCTGTGACATCACTACGAGTGTGCCAGCAGGTCAGCAGTGGCAGA
GGGCGTCAGTCCCTGCGATTGTGCACGACAAGGCCAAGGGGACGTATTGG
TTGAAGCTGAGACTGCATGTGTGCTGCATTGGCAGATAATCGAACACTGA
CAAGTTGTACCTTTACTACAAGTAAATCTAAGCAAATTTCCTGAGCATAA
ACGCGCTGTTGAAGAATCGTCCTCCACGGCGCAGTTTTTAGAGTTTCAAC
CTTAAATTTTGACACGTGCTTTGCAATGTACTCGCGAACACCCCAACCGC
GATAAGCAGAGTTTTTTTCAGCGACATACCACGGATCCAAGTTTCACCCC
CTCCGGAAAGTCCATAATACATGTGCCAAAACCCCCCTCAAAAACACTTG
CTTATCGCGGTTGGAGTCTCCGCGAGTACGTTGCGAATCATGTGTCAAAA
TTTTAGGTCAATACTTCAAAAACTGCGCCGTCGAGGACGAGATGACTGCA
TAAGTTCTTTCTTGGCCGGCCCAGCTTGTACCACCCTTAGAGAGGGAAAC
AGGAGCATATCTCGGCAAACGAGTACAGTACAGTTTGTGTTGATGGCCTC
ATATGCAAGAAAACGGGTTACGGAAAAACGCAGGCTAACGAATGAATTCC
AACGAAATTACCTCAGGTTGTGAGGTTTTCGCCTGTGTTGACTGAATCTA
AGTAGTTTCGCTCCCAGATGCACCTTCGAACGATGAAAGAACCAAGCTAA
ACCTGTATAGAAGCATCGGATCGAAGTTTTTGCCTTAGCCTTTCGGGGGT
TAAAAACCCCCCAAAAAACTGTTGAATCTATTTCTCTTTTAAGAGAGAGC
CCATGCCAACGGTATAGCACTGTAGTACAAGCTCGACCCGAGGGGAGCAG
TGCGTGCGCATTGGCAGCAGTGTTGGGGAGGAATCCACACCGGAATTAAT
CAATCAGCTTTCCATTTCAAGGTATGGTAATCGTTCATGTTTTCTATCGT
GATTTGTAGATGTTCGGAATCATATTCCCATGTCGCCCCCCCCCCCTCCC
TCCCCCATCCCGACTCCGCGAACTCCCTACATTCCCAGCACTCCTTCTGT
CACCATGAGCCTCCGGAATGCCTTGTGCGCGCCTTGCGACAAGAACCCCC
AGAAAGCGATTGCCTACGCGTGGTTCACGTCCATCGTGCTGGTAATGGTG
GCTTTCATCTGCGCGTGCGCGGCGACGGGAAAAAACAGCGGGGGTGGGAG
CGCGTCGCTTGGGTTCGCTGCGATCTGGACGGTGAGAGAGAGGGAGAAAT
TATTATCAGAACGGATCCCATGGAATATGCTGAGCAGTGTCAGGGGGCGG
GGGGGGGAATTCAAGGAAGGCCAGTCGAAATTTCCATTCCTTTCGTTCAA
CGCCAAATATTGATCCTCAGTGTTATATTGATGTTTACCATGGTGCCCTG
ATTGTAATGCGTCTAGCTACTATAGCTCGACGTCCCAGTTGCATGCATTG
CCGTAGTACTTATATTGCTTCGGTCGAGATAAGGCTGAGGATAATATTTG
GGAGTAAATTGGCCCTGTTTTTGTGTCTACTGACCAGATCCAGACGGCGA
TAGGATGTCCTCTTTATACGTGTATTTTAGTTTAATGTGAAGAGAGGTTA
TTGTCGTCTACAAACATTCATTGGGTGGCAGTGCTGGGGGTACTGTATTG
CGACATTCGCGACGCTCGAAATTTCGCAACTCCGTATGGCAGTATGGACG
GTGGGGGGGGGGGGGCGCATTATCCGATTTGCGAGTGCACGATTGCTTTG
GACGGGGTGAGATCAGGTCCGTCTATCGAAAAAATGGTGAAAAAGGTACG
CCACATGAGCCCCAATTAAAAAAATTATGCACGTATGTCAAGGGCAAGTT
AAAGCCGTAGCGACGTATACTTGATATAGAGGTAGAGCAGCTGATGGACT
GCAGTACATGCAGTGATTTCATCCAGTGATGGCAACAGTCGCTAGAGTTG
TACACGGCATCGAAAGAAATATGCAGTACTACAGCACCTTATCTGCGCGG
TAATACTATGGTTACGGTGACACGATCAAAAGAGAGTGATCCAGGTTGAC
AGGCACCGGCATTTCTTGAGAGTTTTGATTGCGAAAGCCACCGCTTGTGT
CGTATAGTGTTACCCGTCATATTATCCAAAGACACAGCGCAATTTGCTAT
CAGACGTTGGACTTTCTTGGAAGAAGATATTCCTTCCGTCAACCTTTGGA
GTGCAACTTCGTCTATTTAACTCATGTGGACTATAAATTGTGCAGTACAA
GTCAACAGAGCGCCATGCTTTTACAGGGGTTAGAGCCCGACTCGGGCAGC
ATGGTGGGCTATATAAATTCGCGGTATTGCCTTCAGTCGGTCATTCGAAT
TTGTTTGCATACATTGTGTTGCTATCCTGGTCTTGTGGTACCTGTGATAT
TGCAGGCTATGGGGTGGCAGTTTGGAGCCTTGTCGAGTTCTTATTTATGT
GCCAAGGTTGCACGTTTTTGAATTATTTGTTGCTGGGATGTGTCGTTTCA
GTACAAACGGCATCACCAATCACAATTAGTGTGATACAGGCGTAACTAAC
ACTTACCGAGACTAAAACGCATTGTTGAACCCTGCCTCACGGTACGGGCA
GGCATGATATACGGTTATCCAGCACGTGAAACCATATGTACACAAAGTAC
ATGACGTATGTGTGTGAACGCAATTCTTGAAGGTTGAGTGGTGATTTTGA
TATATCAGGCGTCAACTGGATGGTATTTGTATTTTACTTCAAATAGTGTG
ATTGAAGTACCAAAACGCTACACATCTAGTTCACATCTGAAGTCGATTAT
ATTGGGAATTTGCAACCTACAACACTTTTGTTGTCTGTTCCCTGTAGATT
GTGGATGGCTCGACTGCTCATGTCGGTGGTGAAGTGATCATTACAGTCGC
CACTGAGTTGTGTTTCGCTCCACTGCTCTCAACGAACCAAAAGTGAAGGG
GTACACGCTAGGACACTATGTACCTTTTCAAACCTTTCTCCGACGTTTTC
TGTGGGTGTTGGACTCTAAAGGGTGCAATATGGGTTTGCTGGACAACTAA
GTGCGCGGTTTAAAACAGTTGCTGAGGTATGTTTATATTTGACAGTTGGC
AAAATTCGGTGTTGATACGGATGTCTCCGCTCGTTGTCGAAAGGCCCACC
TCCTTTTTTAGCCCAACTAATCCTCATGTTTATACTCGGGGCAGTAGCCA
GTGTATATGCCATAGTCCGTTGTTGGTCGTGGAACTGCTCGCGGCGTTCA
CCTTGCAGTTGTCGGTGTGTCCCAAATACTTCAATACGCCCAACACGCAT
AAAGTATTCGTTCCCTTTCGAGCCGTGTGCCCGTTGAATTGTGGACAGTA
AACGTGATGGGGTATGAACGTTAAAAAGGCTTGAACGTGTTACAAATATG
TTGTTAATGTTTTATACACATCACGTGTCGAACTAACCGCGATGGTGTAC
GCCGTAGGTGTTTCTTATGATGAGGCACTCGCTATAGCGGTGAATATTCC
CAGTCTCTTCATGCATGCCCCAAGAACCTAACATGCCTCGCCAAAGTGAA
ACATCTTGATTGTCCCCTTCCCCACCCCCCCACTTCCCCCCGCTCCCCGC
CAGGCCCCCGCTAATTAATATATATATATATATATATAAATATTCCGAAA
TGCTTTCGTTACTAAAAAACCACCATACCACGGATTTTCTTCACGAAGTA
CTGACAGGTACCGAATGCCTCTTGATCGCTGCGTACCCTGTATGTATATC
ATGGCGTCAAATTTTTACGCGACGTTGGTGCGGTAGGTGCTATTGCTCAT
CGGGCTATCGGTCGGAGGCTCCCTGGTGATGCGGAAGTACCGAACATCCC
TCGCGGTCGGCTTCTTCCTGGGCGTGGTGACGATTATGTCGCAAACCATG
CTCGTCCTCTTCGCCGTTTTCGCCGGGCGCGCATCGACTACCAGCGATAA
AGATGAAAAGCCGGCCGATCGCGCCTTCGCGGCGTTCTGCTTCTTCCTCT
GGATCGTTTACACTGCTTTCGCCGGTGCGCTAACGAAAAAATGTTGTATG
GTTGTCTCGTGTCCAGCGATGGGGTAGGATGGAGGCAAGGAAGTACTAGA
GCAGGCTCGAAGAAAAGTTCAATTAGTTTTATACGAGACGAAGGAGTGTT
TGTTTGGGGGTGGGGGCGTACTCGTGCTTTGCATGCGATACTAGAGATGT
TCGACCGTTTTTTATGCCTTCTCAAGGAGTGAGAACCCCCTGGCATCTGA
TGTTCTATTTTTTGGATTGTTTATCTCTGTTAATCCTCACTTTCATTATC
CCCGACGCCCCCCCTACTGCCCCACGCACAGGCATGCTCGCTGTGTTTCG
GGAGGATATCATCATGGACGACAGCACTAAGTACGAGGACGATCCGGTAC
CGGAAGTGTCTACGCAACCGCCGATCGGGGTCTAAGAGACACTAACCTAC
TCTTGCGGGTTGGCCTTTTTTTTTTTTCGGCCCCTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3109:9751..16437+

>mRNA_H-paniculata_contig3109.8408.1 ID=mRNA_H-paniculata_contig3109.8408.1|Name=mRNA_H-paniculata_contig3109.8408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig3109:9751..16437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCTCCGGAATGCCTTGTGCGCGCCTTGCGACAAGAACCCCCAGAA
AGCGATTGCCTACGCGTGGTTCACGTCCATCGTGCTGGTAATGGTGGCTT
TCATCTGCGCGTGCGCGGCGACGGGAAAAAACAGCGGGGGTGGGAGCGCG
TCGCTTGGGTTCGCTGCGATCTGGACGATGAGCCTCCGGAATGCCTTGTG
CGCGCCTTGCGACAAGAACCCCCAGAAAGCGATTGCCTACGCGTGGTTCA
CGTCCATCGTGCTGGTAATGGTGGCTTTCATCTGCGCGTGCGCGGCGACG
GGAAAAAACAGCGGGGGTGGGAGCGCGTCGCTTGGGTTCGCTGCGATCTG
GACGGTGCTATTGCTCATCGGGCTATCGGTCGGAGGCTCCCTGGTGATGC
GGAAGTACCGAACATCCCTCGCGGTCGGCTTCTTCCTGGGCGTGGTGACG
ATTATGTCGCAAACCATGCTCGTCCTCTTCGCCGTTTTCGCCGGGCGCGC
ATCGACTACCAGCGATAAAGATGAAAAGCCGGCCGATCGCGCCTTCGCGG
CGTTCTGCTTCTTCCTCTGGATCGTTTACACTGCTTTCGCCGGTGCTATT
GCTCATCGGGCTATCGGTCGGAGGCTCCCTGGTGATGCGGAAGTACCGAA
CATCCCTCGCGGTCGGCTTCTTCCTGGGCGTGGTGACGATTATGTCGCAA
ACCATGCTCGTCCTCTTCGCCGTTTTCGCCGGGCGCGCATCGACTACCAG
CGATAAAGATGAAAAGCCGGCCGATCGCGCCTTCGCGGCGTTCTGCTTCT
TCCTCTGGATCGTTTACACTGCTTTCGCCGGCATGCTCGCTGTGTTTCGG
GAGGATATCATCATGGACGACAGCACTAAGTACGAGGACGATCCGGTACC
GGAAGTGTCTACGCAACCGCCGATCGGGGTCTAAGCATGCTCGCTGTGTT
TCGGGAGGATATCATCATGGACGACAGCACTAAGTACGAGGACGATCCGG
TACCGGAAGTGTCTACGCAACCGCCGATCGGGGTCTAA
back to top