mRNA_H-paniculata_contig3107.8403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3107.8403.1
Unique NamemRNA_H-paniculata_contig3107.8403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 6.800e-40
Identity = 106/267 (39.70%), Postives = 119/267 (44.57%), Query Frame = 1
Query:  148 EQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLK----------------------------------------------------------------------------------------SFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQAFEV-----------------------------------PILNRASFDVRLMACVWLVAPGPKEPYGASSEDQQAQ 579
            E+QA+  G + GWMQQLLTKVLANMSI VSNLV KY+DADVV SA LK                                                                                        S +CFSADPDR+WTP FASLDDPFG LHKLV ASDLT+CL+R   PD+S+  Q QAFEV                                   PILNRASF+V L+ACVWLVAPGP E   A+ EDQQ Q
Sbjct:   72 EEQAAPAGVS-GWMQQLLTKVLANMSIEVSNLVLKYEDADVVLSAALKLSPTSWIVQQCCCPACTTCTMPYRAFPTNTLRRDMEARGEPGGESPDLLLSMARGNTATPELVVQQYHNATAVMKSYAACLLHVQPQQSLVCFSADPDREWTPAFASLDDPFGFLHKLVHASDLTVCLDRYCAPDSSRRRQVQAFEVLRPASAPFRLGRGCSSVQLPRMNCYVVVGFYVKKVPILNRASFEVHLLACVWLVAPGPPESSFAAWEDQQTQ 337          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A024G1K2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1K2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.440e-27
Identity = 74/178 (41.57%), Postives = 106/178 (59.55%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSND----TRAREEQQASSTGAAT-------GWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKG-WQTQAFEVPILNRASFDVRL 504
            RGFI+ELRIHIPWT+L S+PIE+K  T+EII+  TT +S ND    T A  ++   S+G AT        W+ + L K+L N+++ V+NLV KY++++VV S  L S    SA     W   FA ++ P   + K++ A DLTI L+R  E +T     +   +E+PILNR S   R+
Sbjct:   66 RGFIRELRIHIPWTQLLSQPIEVKLYTIEIIL--TTVKSQNDAQRSTSASTKRSRVSSGQATQLDEAKPSWIHEALQKILVNVTVQVNNLVVKYEESEVVLSMALGSLEIKSARNRLGWMAGFAEVEGPQQEICKIITAGDLTIFLDRYTESETPDAPRRVIGYEIPILNRGSISSRV 241          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: H3H1A7_PHYRM (Chorein N-terminal domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1A7_PHYRM)

HSP 1 Score: 111 bits (277), Expect = 9.390e-26
Identity = 66/168 (39.29%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-CYEPDTSKGWQTQA--FEVPILNRASFDVR 501
            RGFI+ELRIHIPWT+L S+PIE+K  T+E+I++  +   +    A +  +       +GW+   L K+LAN+S+ V+NLV KY+  DVV S  L +   +SA     W  +F  L      + K + A D+TI L+R   E DT  G + +   +EVP+L+R S  VR
Sbjct:   65 RGFIRELRIHIPWTQLLSQPIEVKLYTIELILTAKSERGAAADAAIDAAEDKIEQPKSGWLHDTLQKILANVSVQVNNLVLKYEHDDVVFSIALGTLDFYSASERDHWRRSFEELGVGRRAICKRIDAKDVTIFLDRYTSEADTKDGVRRKVLGYEVPVLSRTSASVR 232          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: F0VZU0_9STRA (Uncharacterized protein AlNc14C3G419 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZU0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.010e-25
Identity = 69/182 (37.91%), Postives = 103/182 (56.59%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPT---------THESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCY---EPDTSKGWQTQAFEVPILNRASFDVRLMACV 516
            RGFI+ELRIHIPWT+L S+PIE+K  T+EII++           T  S+   R+   Q      +   W+ + L K+L N+++ V+NLV KY+++++V S  L S    SA     WT  FA  + P   + KL+ A+DLTI L+R     E DT +  +   +E+P+LNR S   R+  C+
Sbjct:   66 RGFIRELRIHIPWTQLLSQPIEVKLYTIEIILTTVDSKKGGQRPTSPSTKRNRSPSGQDTQFDESKPSWIHESLQKILVNVTVQVNNLVVKYEESEIVFSMALGSLEIKSAKNRLGWTAGFAEAEGPQQKICKLINATDLTIFLDRYTKNKEVDTPR--RVIGYEIPMLNRGSISSRVRLCL 245          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A5D6Y3T1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3T1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.880e-25
Identity = 70/191 (36.65%), Postives = 102/191 (53.40%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSNDTRAR-----EEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQAF------EVPILNRASFDVRLMACVWLVAPGPKEP 546
            RGFI+ELRIHIPWT+L S+PIE+K  T+E+I+   T    ++ RA+     E+ +       +GW+   L ++LAN+SI V+NLV KY+  D+V S  L +   +SA   +DW  +F     P   + K + A DLTI L+R Y    S     + +      EVP+L R S   R    +   A  P+ P
Sbjct:   66 RGFIRELRIHIPWTQLLSQPIEVKLYTIELIL---TARGDDERRAKRTASPEQPEPKMEQPKSGWLHDSLQRILANISIQVNNLVLKYEQDDIVLSVALGTLDIYSASAAKDWKRSFEEPQGPAQAISKRIDAKDLTIFLDR-YTRGRSDSKTAEVYRKVVGYEVPVLTRTSLSARARLLMKPRAAAPETP 252          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A833SYH9_PHYIN (Vacuolar-sorting-associated 13 protein C-terminal n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SYH9_PHYIN)

HSP 1 Score: 112 bits (279), Expect = 1.180e-24
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHES-SNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-----CYEPDTSKGW---QTQAFEVPILNRASFDVR 501
            RGFI+ELRIHIPWT+L S+PIE+K  T+E+I++     + ++   A  +++A      +GW+  +L K+LAN+S+ ++NLV KY+  DVV S  L +   +SA     W  +F  L      + K + A D+TI L+R       + DT +G    +   +EVP+LNR S  VR
Sbjct:   65 RGFIRELRIHIPWTQLLSQPIEVKLYTIELILTGKNSAARTSSVDAAVDREAEIDQPKSGWIHDMLQKILANVSVQINNLVLKYEHDDVVFSIALGTLDFYSASESDGWKRSFEELKGGRRAICKRIDAKDVTIFLDRYKSDGAAKEDTRQGTVRRKVVGYEVPVLNRTSVSVR 238          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A2D4C9P6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9P6_PYTIN)

HSP 1 Score: 110 bits (276), Expect = 2.420e-24
Identity = 65/184 (35.33%), Postives = 105/184 (57.07%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISP----TTHESSNDTRAREEQQASSTGAA---------TGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-----CYEPDTSK-GWQTQAFEVPILNRASFDVR 501
            RGFI+ELRIHIPWT+L S+PIEIK  TVE+I++       H+ +  T  R+  ++ S  +A         +GW++  L K+L N+++ ++NLV KY+  D+V S  L +   ++A+  +DWT  F         + ++  A DLT+ L+R      + P TS+   +   +E+P+LNR S  +R
Sbjct:   66 RGFIRELRIHIPWTQLLSQPIEIKLYTVEMILTAQEADAKHQRNASTDKRKSSRSKSMESADDDEIENPKSGWLRDTLQKILTNVTLQINNLVLKYEQDDIVLSVALGTLDFYAANDGKDWTRVFTEPKGKDQSIARVAEAKDLTVFLDRYERDETWHPATSRVPRRVSGYELPLLNRTSIVMR 249          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A3M6VGT0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGT0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.040e-24
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISP-------TTHESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-CYEPDTSKGWQTQ-------AFEVPILNRASFDVR 501
            RGFI+ELRIHIPWT+L S+ IE+K  T+E+I++           ++  DT   +E+Q       +GW+   L K+LAN+++ V+NLV KY+  DVV S  L +   +SA+   +W  +F  L      + K + A+D+TI L+R   E +T  G Q          +EVP+L+R S  VR
Sbjct:   65 RGFIRELRIHIPWTQLLSQAIEVKLYTIELILTAKKDCQERVQRDTFVDTMTLKEEQEEMEQPKSGWIHDTLQKILANVTVQVNNLVLKYEHDDVVFSIALGTLNFYSANEKHEWKRSFEELKGKQRTICKRIDANDVTIFLDRYTSEGNTKLGMQNDPVRRNVVGYEVPVLSRTSASVR 244          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A8K1CF18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF18_PYTOL)

HSP 1 Score: 110 bits (274), Expect = 5.270e-24
Identity = 67/189 (35.45%), Postives = 101/189 (53.44%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIIS---PTTHESSNDTR-------------AREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQA--------FEVPILNRASFDVR 501
            RGFI+ELRIHIPWT+L S+PIE+K  TVE+I++   P+   S +                A  ++ +      +GW++  L K+LAN++I V+NLV KY+  DVV S  L    C+S    R W  +F         + +++ A DLTI L+R Y  D S+   + +        +EVP+L+R S  +R
Sbjct:   66 RGFIRELRIHIPWTQLLSQPIEVKLYTVELILTARDPSRRHSVDSAMXXXXXXXXXXXXXASSKEASEIENPKSGWLRDTLQKILANVTIQVNNLVMKYEQDDVVLSVALGVLDCYSVSETRGWVRSFVDPQGSTRAISRVIEAKDLTIFLDR-YTSDRSQSDPSASEIRRRVVGYEVPVLSRTSLSIR 253          
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A0W8B040_PHYNI (Vacuolar protein sorting-associated protein 13B n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8B040_PHYNI)

HSP 1 Score: 108 bits (269), Expect = 2.510e-23
Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISP---TTHESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQ--------AFEVPILNRASFDVR 501
            RGFI+ELRIHIPWT+L S+PIE+K  T+E+I++    +   +S DT    E +       +GW+   L ++LAN+S+ V+NLV KY++ DVV S  L +   +SA+    W  +F  L      + K + A D+TI L+R      +K    Q         +EVP+L+R S  VR
Sbjct:   65 RGFIRELRIHIPWTQLLSQPIEVKLYTIELILTGKNRSARAASVDTAVDREPEIEQ--PKSGWINDTLQRILANISVQVNNLVLKYENDDVVFSIALGTLDFYSANEKESWKRSFEELKGGRRAICKRIDAKDVTIFLDRYTNDGVTKDGGRQDSVRRKVIGYEVPVLSRTSASVR 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE6.800e-4039.70VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A024G1K2_9STRA3.440e-2741.57Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
H3H1A7_PHYRM9.390e-2639.29Chorein N-terminal domain-containing protein n=1 T... [more]
F0VZU0_9STRA1.010e-2537.91Uncharacterized protein AlNc14C3G419 n=1 Tax=Albug... [more]
A0A5D6Y3T1_9STRA1.880e-2536.65Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A833SYH9_PHYIN1.180e-2437.93Vacuolar-sorting-associated 13 protein C-terminal ... [more]
A0A2D4C9P6_PYTIN2.420e-2435.33Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A3M6VGT0_9STRA4.040e-2437.22Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A8K1CF18_PYTOL5.270e-2435.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0W8B040_PHYNI2.510e-2337.50Vacuolar protein sorting-associated protein 13B n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3107contigH-paniculata_contig3107:2264..4690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.9
Seed ortholog evalue2.6e-70
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons5
Model size679
Cds size678
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3107.8403.1prot_H-paniculata_contig3107.8403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3107 2264..4690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.6911516-CDS-H-paniculata_contig3107:2263..24761622929955.6911516-CDS-H-paniculata_contig3107:2263..2476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 2264..2476 -
1691481085.53322-CDS-H-paniculata_contig3107:2263..24761691481085.53322-CDS-H-paniculata_contig3107:2263..2476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 2264..2476 -
1622929955.7433877-CDS-H-paniculata_contig3107:3037..32111622929955.7433877-CDS-H-paniculata_contig3107:3037..3211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 3038..3211 -
1691481085.5466971-CDS-H-paniculata_contig3107:3037..32111691481085.5466971-CDS-H-paniculata_contig3107:3037..3211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 3038..3211 -
1622929955.762137-CDS-H-paniculata_contig3107:3663..37231622929955.762137-CDS-H-paniculata_contig3107:3663..3723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 3664..3723 -
1691481085.5583587-CDS-H-paniculata_contig3107:3663..37231691481085.5583587-CDS-H-paniculata_contig3107:3663..3723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 3664..3723 -
1622929955.778206-CDS-H-paniculata_contig3107:4073..41671622929955.778206-CDS-H-paniculata_contig3107:4073..4167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 4074..4167 -
1691481085.5697484-CDS-H-paniculata_contig3107:4073..41671691481085.5697484-CDS-H-paniculata_contig3107:4073..4167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 4074..4167 -
1622929955.7949028-CDS-H-paniculata_contig3107:4553..46901622929955.7949028-CDS-H-paniculata_contig3107:4553..4690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 4554..4690 -
1691481085.580043-CDS-H-paniculata_contig3107:4553..46901691481085.580043-CDS-H-paniculata_contig3107:4553..4690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3107 4554..4690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3107.8403.1

>prot_H-paniculata_contig3107.8403.1 ID=prot_H-paniculata_contig3107.8403.1|Name=mRNA_H-paniculata_contig3107.8403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MCRGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSNDTRAREE
QQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFM
CFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQ
TQAFEVPILNRASFDVRLMACVWLVAPGPKEPYGASSEDQQAQVDWRDLA
DEDAVEMSGSSWGVGKRGGGAGTATQ
back to top

mRNA from alignment at H-paniculata_contig3107:2264..4690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3107.8403.1 ID=mRNA_H-paniculata_contig3107.8403.1|Name=mRNA_H-paniculata_contig3107.8403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2427bp|location=Sequence derived from alignment at H-paniculata_contig3107:2264..4690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAGGGGGTTTATCAAGGAGCTGCGGATACACATCCCGTGGACGCG CCTACAGTCGAGGCCGATCGAGATCAAGTTCAACACGGTCGAGATCATCA TCTCCCCCACCACACATGAGTCTTCCAACGATACCAGGTATTATATATTA TGCGCTATCTTTCCATGAAGATCTAAAACTAGCTGCCAGTACACTGAAAA CTGTGAAAGGTTCATTGAACAAGAGGAAATTCTGGGCAGGTTCTCTCGAG ATGTGTTCCAAGTTTCGCTGATCGATATCACCAATTTTTAATTATTGTAC CCAAAGGGCACCTAAGCGAATGTCATCATCTACCCATATTTATCGCATCC AAAAAATCTCTTCTGGCATATTTCTGTCGCGCTCCTTGCTTCGTTGCCTG TTGTGGCTACGCACCGTCAGACTAAGATAATATTGAACGAGGAATGGCGG GCCCTACCCCTGTGGTGTTCTAATATATTGACGTACACCGCTCTCTCCTC CACAAATATGCTTTGCAATGCAGGGCTAGGGAGGAGCAGCAGGCTTCCTC GACAGGGGCAGCGACAGGATGGATGCAACAGCTTCTCACCAAGGTCCTGG CAAACATGTCCATCTCGGTAAGTGCTGTGTGTGGGGTCTTTCTGCTAACT GCCCTACGCAGATATTGCACGTAGTTGTGAGGGTCTCCTACATCGTCTCG TGTGTATACGGTCGACCCAGGCGTAGATGGTGTGGGCTGAGAGAAACCGG GAAGATGGTAACACACCGTTCACATTCAGAGGAAGTTCACGACGGCATCT ATTCTCAGCGCTTTCAATATAGTCTCCTTCTCATGACAGCACATTGAGCT GTTTTCGCTAATCAATCCAATTCCGCGTAAGGCAGAGACTACGGGTTTCG TTGCGTCCCGTAATTCAATAGTGAGTCTTACCCCTTCAATACACTCACTC TCCTACTCGAATTACAGGTGTCGAACTTGGTTTTCAAGTACAAGGACGCT GATGTGGTGGCGTCTGCATTTCTCAAGGTGAGTAGATGTGCGCGTGTGAC TGGTAGCTCCAAAAATGCTCCACTGACAATTTAAAGACTGAAAACATTCT CGCGGTACTACTTTTAGTAGTATCTGTAGTCTGTGTCTGTGTCACCATGC CTACTGTATACCATATCACGCGAGAAGATGTGGACCTGAACGACCGAGAT CGTGACATACACAGGTGGTTGTATCTGGTTGCACCAAATGATGCCCTAGG GCCAGCTGGAGAGTTCGCATCCTTTCCTCTCAGTACCAGATTCATGCGAC CTCCTCTTTTCTATTCGTTAGGTGATGCCTCTAGTCGAATTTATATAAAA AAGAAGCTCAGCAGGTGTCAAATTTGCCTCTGCCGAAATTCCCCCCACTT CTATTCAGAAACCCCCGCTCCTCGCTGCACTTTTTCCCGCCGTGTTACTT GATTCCATTTGATCTCTTAACCGACCCAGTCTTTCATGTGCTTTTCCGCG GACCCTGACCGAGATTGGACGCCGACGTTTGCCAGCCTAGATGATCCCTT CGGCCTCTTGCATAAGCTCGTTCGTGCCAGCGACTTGACGATCTGCCTTG AGCGTTGTTATGAGCCAGACACGAGCAAGGGGTGGCAGACTCAGGCCTTC GAGGTGGGCATGTGGGAGGGTAGCGCCCCTCCTCTGGTACTGTTTGAGTC TCCGCATGTACTTGCAGCAACATTATGGGTGTTCTGGTAAAGCCGCGGCT ACGTCGGTGCAGTGGGTGTTTAGTCCTCGTACCCATTTAGTCATAATCCA AAATCCAGGACCCACGCACAACCTCTCTCTGCGCTCGAAGTGTCGATCTT TGATCCCTTGTAGGCGTAGTGCCTAGGAGATATGTTCTTGGAAGTTACTC TGCAAAGGTTGTAAACCTGTCTCGAGACGACCATCTCCACCTTAGCGCAT CATGTACCAAGCTGACGTCGAAATAGGCGTGTAGGCATAGCTGCTCTTTC CGATGATTCGGCCTAAACACACCATTTTCGTCCGTTTTCATTCATACTTT TTCGAGCATGTGCTTTTTCTTTCGGCCTTTACTTCCGGATCATTCTGTTC ACTTTTTCACATTACAACGGAATCAATGTCTGTTTTCTCTTTCAAAACAA TTCATCGTTTGTGGCAATGATTTTTGCTCCGGGGGCGACGGTGTCACACG CTACGCGCAAGCAGGTGCCCATACTCAACCGGGCGTCCTTCGACGTTCGG CTTATGGCCTGCGTGTGGCTCGTCGCACCGGGGCCAAAGGAACCCTACGG CGCTAGTTCGGAAGATCAACAAGCACAGGTGGATTGGCGGGACTTGGCCG ACGAGGATGCTGTGGAAATGTCGGGTTCGAGTTGGGGTGTGGGTAAGAGG GGTGGCGGTGCTGGAACTGCCACGCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3107:2264..4690-

>mRNA_H-paniculata_contig3107.8403.1 ID=mRNA_H-paniculata_contig3107.8403.1|Name=mRNA_H-paniculata_contig3107.8403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig3107:2264..4690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAGGGGGTTTATCAAGGAGCTGCGGATACACATCCCGTGGACGCG
CCTACAGTCGAGGCCGATCGAGATCAAGTTCAACACGGTCGAGATCATCA
TCTCCCCCACCACACATGAGTCTTCCAACGATACCAGATGTGCAGGGGGT
TTATCAAGGAGCTGCGGATACACATCCCGTGGACGCGCCTACAGTCGAGG
CCGATCGAGATCAAGTTCAACACGGTCGAGATCATCATCTCCCCCACCAC
ACATGAGTCTTCCAACGATACCAGGGCTAGGGAGGAGCAGCAGGCTTCCT
CGACAGGGGCAGCGACAGGATGGATGCAACAGCTTCTCACCAAGGTCCTG
GCAAACATGTCCATCTCGGGCTAGGGAGGAGCAGCAGGCTTCCTCGACAG
GGGCAGCGACAGGATGGATGCAACAGCTTCTCACCAAGGTCCTGGCAAAC
ATGTCCATCTCGGTGTCGAACTTGGTTTTCAAGTACAAGGACGCTGATGT
GGTGGCGTCTGCATTTCTCAAGGTGTCGAACTTGGTTTTCAAGTACAAGG
ACGCTGATGTGGTGGCGTCTGCATTTCTCAAGTCTTTCATGTGCTTTTCC
GCGGACCCTGACCGAGATTGGACGCCGACGTTTGCCAGCCTAGATGATCC
CTTCGGCCTCTTGCATAAGCTCGTTCGTGCCAGCGACTTGACGATCTGCC
TTGAGCGTTGTTATGAGCCAGACACGAGCAAGGGGTGGCAGACTCAGGCC
TTCGAGTCTTTCATGTGCTTTTCCGCGGACCCTGACCGAGATTGGACGCC
GACGTTTGCCAGCCTAGATGATCCCTTCGGCCTCTTGCATAAGCTCGTTC
GTGCCAGCGACTTGACGATCTGCCTTGAGCGTTGTTATGAGCCAGACACG
AGCAAGGGGTGGCAGACTCAGGCCTTCGAGGTGCCCATACTCAACCGGGC
GTCCTTCGACGTTCGGCTTATGGCCTGCGTGTGGCTCGTCGCACCGGGGC
CAAAGGAACCCTACGGCGCTAGTTCGGAAGATCAACAAGCACAGGTGGAT
TGGCGGGACTTGGCCGACGAGGATGCTGTGGAAATGTCGGGTTCGAGTTG
GGGTGTGGGTAAGAGGGGTGGCGGTGCTGGAACTGCCACGCAGGTGCCCA
TACTCAACCGGGCGTCCTTCGACGTTCGGCTTATGGCCTGCGTGTGGCTC
GTCGCACCGGGGCCAAAGGAACCCTACGGCGCTAGTTCGGAAGATCAACA
AGCACAGGTGGATTGGCGGGACTTGGCCGACGAGGATGCTGTGGAAATGT
CGGGTTCGAGTTGGGGTGTGGGTAAGAGGGGTGGCGGTGCTGGAACTGCC
ACGCAG
back to top