mRNA_H-paniculata_contig11307.840.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11307.840.1
Unique NamemRNA_H-paniculata_contig11307.840.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11307.840.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.470e-13
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   28 TRVLLLPTDFEAVCRIYSVALAAVTEGIPWIRAVDVWHISSVAEHETVFLPE 183
            T +L  P  +EAVC IYS A+ A+TEG+PW+RA DVWH+SS+ +H+ VF PE
Sbjct: 2572 TSILRWPCPYEAVCNIYSAAVKALTEGLPWVRAADVWHVSSIPDHKKVFEPE 2623
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BLAST of mRNA_H-paniculata_contig11307.840.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.020e-11
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   58 EAVCRIYSVALAAVTEGIPWIRAVDVWHISSVAEHETVFLPE 183
            EAVC+IYS A+ A+TEG+PW+RA DVWH+SS+ +H+ VF PE
Sbjct: 5290 EAVCKIYSAAVKALTEGLPWVRAADVWHVSSIPDHKKVFEPE 5331
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11307.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KK33_9PHAE3.470e-1357.69C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LEV4_ECTSI2.020e-1164.29C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11307contigH-paniculata_contig11307:4637..7125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2e-09
Seed eggNOG ortholog2880.D8LEV4
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1030@1,KOG1030@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size238
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.0220711-CDS-H-paniculata_contig11307:4636..46961622928839.0220711-CDS-H-paniculata_contig11307:4636..4696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 4637..4696 +
1691480639.8102129-CDS-H-paniculata_contig11307:4636..46961691480639.8102129-CDS-H-paniculata_contig11307:4636..4696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 4637..4696 +
1622928839.04643-CDS-H-paniculata_contig11307:6947..71241622928839.04643-CDS-H-paniculata_contig11307:6947..7124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 6948..7124 +
1691480639.8191772-CDS-H-paniculata_contig11307:6947..71241691480639.8191772-CDS-H-paniculata_contig11307:6947..7124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 6948..7124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11307.840.1prot_H-paniculata_contig11307.840.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11307 4637..7124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11307.840.1

>prot_H-paniculata_contig11307.840.1 ID=prot_H-paniculata_contig11307.840.1|Name=mRNA_H-paniculata_contig11307.840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
GANEVVTRKTRVLLLPTDFEAVCRIYSVALAAVTEGIPWIRAVDVWHISS
VAEHETVFLPESLSGNDESGSVSEEDESG
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mRNA from alignment at H-paniculata_contig11307:4637..7125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11307.840.1 ID=mRNA_H-paniculata_contig11307.840.1|Name=mRNA_H-paniculata_contig11307.840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2489bp|location=Sequence derived from alignment at H-paniculata_contig11307:4637..7125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCCAACGAAGTTGTGACAAGAAAAACACGTGTGCTCTTGTTGCCGAC
GGATTTTGAGGTAATCAGCTGCAACATAATTATCGAGCTTGCTTAACAGA
AAACAACAATAGAGTGTTCTAATAATAAACAGCCGCTCATGAAAAATGGG
AACCAACTTTTTCGATTCGAACGAAGCCCCATTGATTTTTCATTGAAAAC
TTTGAAAATGGTGGGACCTAATACTACACGCAGGATGGATCAATGTGAAT
AAAGGTTTGTGCTGGACGCCAAGGGCAAGTCGCGCAGATCGCGCCTTGTG
TGTTGCTTCGCGGCCGCTCGGCCCCTACTTTCGGGCCAACGACGAGGATT
CCGTTTTTCTTCCTTTTGAATGGTAAATAAAAGTGCTGACATGGACACGA
CCTCTTTTAACGGAGGGAGCTAAATGTATGTGTTGTAAATTTGTACGGTG
CAAGGACGGCATCATCATTAGCAGCAGCAGCAGCAACAACAACAACAACA
ACTAACTACTTAGATACACGATAGAGAACGATTGTTTAGCGCCAACCAAG
GACGACAGCAGGGAGGACTAAGTAATTAGAGTGTTGTTCCTGTGTTGGAA
GAACCATGGTTGAGATTCGTGTTGTCATCAACGACGACTTTGTGAAGCTG
TTTGTTCCTCCATCGAGGGGATGGATGCTCGCCTAGACGAAAACCATTGC
AATGGTCACTAGTTCTTAGTAGCTGACATCAAACCTTGCAAAACAAAATT
TCATGTCGCAATAATTTCGCGACTACAGGAACTGAAATATCGTCCACCTC
ACGGGTACCAGGAGGGCAGTGCATTATCAAGGTATTATCAAGTAAAATAT
CTAAAAGGCGGTATTTGACGTTGTGAAAAGATGCGTTTGTTGCCGTTCTG
ATTTTCAACCGTGAAAACAAATGTTAAAACGGCAAAAATCATTTGAACCT
AAGTGAACATCACATACGCCACAAAATGAACTGTTCGGCCATGAGATCGA
TGGGCAATGGTACTTTTAAACTTTTCGGCCCTGCGTTATGTCGCAAAAGC
TGCAGGCTGCGTGCACCAGATTGCGCACCCAACATCCTCTTGTTTCATTC
CCAAAAACAATCCCATGTTCAGATCACATTAAGGATGACGTACTCTTCGC
AAATGCTTGGATAATACAGCAAGTCGTCTGTAATTCCCACGTGTTCGACA
ACATCGAGTCCCGTATCCATCGAGACAGAGAACATCGACCCGAGCCCCAG
CGGGCGTACCGCTTCACGCACCGCAAGCGGCGCGCTCGGGGCTAGCGATG
TCAACAGGAAGCGCAAGGGACCTCCTATGGCCATAGACGACACGGTGGAC
ATGTTTTGGTCGTGTTGCAGTACTATACGTTGTCTTCAGTCATTCATGAA
CGGGAGCAGCGACATGAGCACGCTTTGTGCGGAGCAAAATATCATGCGAT
GCGCGACAGGTACAGCACGATCCGCGTTTATCAGGGGACAGATCCCGGTT
GTGAAGCTTTCGAAGAATGAGGGTGCCATGCTTGCTGGTAGGCAGGTCGT
CTACAATTAGTTCTTCATGAAGGCCTACGGCGTGTCGAACAACATGATTC
AATCCGCGAAATTCAATCGTCGTTCCGCCGTTACAAGAGGCCATGTCCAT
GTCAACGCTTTTATTTACCATTCAAAAGGAAGAAAAACGCAATCCTCGTC
GTTGGCCCGAAAGTGGCGGCCGAGCGGCCGCGAAGCATCACACGAGGCGC
GATCTGCGCGACTTGCCCTTGGCCTCCACCACAAACCTTTATTCACAACG
ATCAGCCCTGCGTATACCATCAGGTCGCACCATTTTCGAGGTTTTCAATG
AAAAATCAATGGGGCTTCGTTCCCGTCGGAAAAGTTGGTGATCATTTTCA
TGAGCGGCTGTTAATAGCTGTTGTGGGGTACTTTGCTCCCGAATATTTTG
CAAAAGTTGGAATCTCGAATGAATGACTCACAACTAACACACAAGGATTG
AAATCCCGGGAAATTACAACTTTTCTCCTGTTTCGTGTTTTGAAATTGTT
TCCCGTCTATTGACGCCTGTTTCCCATTTTTTTTAGATACTCTTAGACGG
GTTTTTTTCTGTCCGACGCGAGAGGACCCAACACCGGTTTTTAATCACTA
ACCCTTACGGAAAACGGGGGGGGGGGGAAAGGGAACAAAGAATGGCACTG
TGGCTCTCACCGACTCTAATGTGTGTGCATCCACTTCCTAACTCACATAC
AGTCATGTCGCTGATATATTTAATGGAATCTAGAGAACGCAAAATGCCAA
TTCCGATACAGGCGGTCTGCCGCATATACTCGGTCGCGCTAGCAGCCGTA
ACGGAGGGCATACCATGGATCCGAGCCGTCGACGTGTGGCATATCTCCTC
CGTTGCGGAGCATGAAACGGTGTTCTTGCCCGAATCATTAAGTGGCAATG
ATGAGTCGGGTTCAGTTTCAGAGGAAGACGAATCTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11307:4637..7125+

>mRNA_H-paniculata_contig11307.840.1 ID=mRNA_H-paniculata_contig11307.840.1|Name=mRNA_H-paniculata_contig11307.840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig11307:4637..7125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCCAACGAAGTTGTGACAAGAAAAACACGTGTGCTCTTGTTGCCGAC
GGATTTTGAGGGCGCCAACGAAGTTGTGACAAGAAAAACACGTGTGCTCT
TGTTGCCGACGGATTTTGAGGCGGTCTGCCGCATATACTCGGTCGCGCTA
GCAGCCGTAACGGAGGGCATACCATGGATCCGAGCCGTCGACGTGTGGCA
TATCTCCTCCGTTGCGGAGCATGAAACGGTGTTCTTGCCCGAATCATTAA
GTGGCAATGATGAGTCGGGTTCAGTTTCAGAGGAAGACGAATCTGGAGCG
GTCTGCCGCATATACTCGGTCGCGCTAGCAGCCGTAACGGAGGGCATACC
ATGGATCCGAGCCGTCGACGTGTGGCATATCTCCTCCGTTGCGGAGCATG
AAACGGTGTTCTTGCCCGAATCATTAAGTGGCAATGATGAGTCGGGTTCA
GTTTCAGAGGAAGACGAATCTGGA
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