mRNA_H-paniculata_contig3106.8400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3106.8400.1
Unique NamemRNA_H-paniculata_contig3106.8400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3106.8400.1 vs. uniprot
Match: A0A6H5J8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8K2_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.460e-38
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 DDVTELHCVNRSKVKAVGSESLPPDEQELADAWVRMLTQVPRISDPKAIAIAQHYPLPRALVAALTDPAVPEEQRAVLLADKMGSNRHEGKLARRVFELFTQEDGDFVL 327
            DDVTELHCV RSK +A GSE  P  E+EL D WVRML QV  +S  KA+ IA HYPLPR LVAAL+DP+VPE  RA LL  KMGS+  + K ARRVFELFTQEDGDFV+
Sbjct:    4 DDVTELHCVARSKTEARGSERFPEKEKELMDTWVRMLEQVQHVSGNKAVEIAAHYPLPRDLVAALSDPSVPEADRAGLLQRKMGSSSEQRKCARRVFELFTQEDGDFVI 112
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BLAST of mRNA_H-paniculata_contig3106.8400.1 vs. uniprot
Match: D7FI47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI47_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.060e-33
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 DDVTELHCVNRSKVKAVGSESLPPDEQELADAWVRMLTQVPRISDPKAIAIAQHYPLPRALVAALTDPAVPEEQRAVLLADKMGSNRHEGKLARRVFELFTQEDGDFVL 327
            DDVTELHCV RSK +A GSE  P  E+EL D WVRML QV  +S  KA+ IA HYPLPR LVAAL+DP+VPE  RA LL  KMGS+  + K ARRVFELFTQEDGDFV+
Sbjct:  669 DDVTELHCVARSKTEARGSERFPEKEKELMDTWVRMLEQVQHVSGNKAVEIAAHYPLPRDLVAALSDPSVPEGDRAGLLQRKMGSSSEQRKCARRVFELFTQEDGDFVI 777
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BLAST of mRNA_H-paniculata_contig3106.8400.1 vs. uniprot
Match: A0A8K1FDV8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDV8_PYTOL)

HSP 1 Score: 63.2 bits (152), Expect = 4.860e-7
Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:   88 ADAWVRMLTQVPRISDPKAIAIAQHYPLPRALVAALTDPAVPEEQRAVLLADKMGSNRHEGKLARRVFELFTQED 312
            A+AWVRML  +P IS+ +A +I  H+P   +L A  +DP   ++ +AV+LADK+  +R E  L++R+F + + +D
Sbjct:  454 ANAWVRMLQMIPSISEDRAQSILNHFPTFSSLRAVYSDPNRTDDDKAVVLADKLHGSRWEAALSKRIFNILSGQD 528
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3106.8400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J8K2_9PHAE2.460e-3867.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI47_ECTSI2.060e-3367.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1FDV8_PYTOL4.860e-740.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3106contigH-paniculata_contig3106:16498..18514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2e-07
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.1176
Hectar predicted targeting categoryother localisation
EggNOG OGs2CG82@1,2QV0V@2759,3Q94U@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1303
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3106.8400.1prot_H-paniculata_contig3106.8400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3106 17466..18514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.3799381-UTR-H-paniculata_contig3106:16497..174651622929955.3799381-UTR-H-paniculata_contig3106:16497..17465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3106 16498..17465 -
1691481085.4570212-UTR-H-paniculata_contig3106:16497..174651691481085.4570212-UTR-H-paniculata_contig3106:16497..17465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3106 16498..17465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.4315045-CDS-H-paniculata_contig3106:17465..176991622929955.4315045-CDS-H-paniculata_contig3106:17465..17699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3106 17466..17699 -
1691481085.4687421-CDS-H-paniculata_contig3106:17465..176991691481085.4687421-CDS-H-paniculata_contig3106:17465..17699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3106 17466..17699 -
1622929955.4498193-CDS-H-paniculata_contig3106:18415..185141622929955.4498193-CDS-H-paniculata_contig3106:18415..18514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3106 18416..18514 -
1691481085.478619-CDS-H-paniculata_contig3106:18415..185141691481085.478619-CDS-H-paniculata_contig3106:18415..18514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3106 18416..18514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3106.8400.1

>prot_H-paniculata_contig3106.8400.1 ID=prot_H-paniculata_contig3106.8400.1|Name=mRNA_H-paniculata_contig3106.8400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
DDVTELHCVNRSKVKAVGSESLPPDEQELADAWVRMLTQVPRISDPKAIA
IAQHYPLPRALVAALTDPAVPEEQRAVLLADKMGSNRHEGKLARRVFELF
TQEDGDFVLT*
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mRNA from alignment at H-paniculata_contig3106:16498..18514-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3106.8400.1 ID=mRNA_H-paniculata_contig3106.8400.1|Name=mRNA_H-paniculata_contig3106.8400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2017bp|location=Sequence derived from alignment at H-paniculata_contig3106:16498..18514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGATGTCACCGAGCTCCACTGCGTCAACCGCAGCAAGGTGAAGGCAGT
GGGGTCGGAGTCTCTCCCGCCCGACGAGCAAGAACTAGCAGATGCGTGGG
TGAGACACACCGACGAGCCTGTTTTGCAGTTTTGCAGTTCTTCTGTTGGT
ATTGTCATCAGAGGGATGGCAGTGGGAGTTGGGATGCGGGGAGGGTTATT
GTTCATTGCGTCTTACGAGTTGTGTTGTACACCGTTGATGTTGGCCACGT
ATTCTCACTATGCAATTGTATTGCCGTACATAAGTACAGCACATAGTAAA
CAATGTCACCATAAGGCAGCCGTGGCGGGCGCTTGCATGATCAAGAGCGC
CAATCTATCCTCACTTCATTTTGACCCCCCCCCCTACCATAGGAAAGAGC
GATTGGCCATCAGAAATCGCTCTGATGAGAGCAAAGCTCCGTCTTCCCGA
GGAATCGTTGTCAATGATTTACCAAATACGACATGCAAAACATGGAATAT
GTCCTGCCCCCCTCCCCCGACACGCCCTCTGATCCTTCCGTGGACCCTTC
TAGGCTCCCTGCAGCTCATGTAACGGCACGCAGGGACAAGCAGAGGATGG
TATTCTCCCCGAATGATGACCGGTTAGGTTGTCGAGACGATGGCCACAGA
GGTCGCGTAATTTGAAGTCCAGTGTCTTCCTTCTTGACGACCCTTGCGGT
ATTTATAGACCTCCATATTAACGTATTATTTCAAAACGACCAGCATCATT
ATAAAAAAAGTACCTGAAAAATATACAAACCTGCCTACCCCTCTCCCCCA
CTCACCACGATTCAGGTTCGAATGCTTACTCAGGTCCCGCGCATCAGCGA
CCCGAAAGCGATAGCGATTGCTCAACATTACCCCTTGCCTCGAGCGCTTG
TCGCCGCGCTAACGGACCCTGCGGTGCCCGAGGAGCAGCGAGCTGTTCTC
CTCGCCGACAAGATGGGTTCGAATCGGCACGAGGGAAAGCTCGCACGGCG
GGTGTTCGAGCTCTTCACGCAGGAGGACGGCGACTTCGTGCTGACTTGAT
GATTGACCTACAAACTCATGCATGAATTTACCTCGATATTCAGGTTGTGG
GAATAGTTGCGGTTAGGCAGGAAGATTTCGCGCGTGTATATAGATTTGTT
GCTCTTTTCGGGGGGGGCGTGATATACTTGGCTTATTTTTCTTGAAAATG
TGACCTAGGGAAGGGGACGTAGTTTTCACGGAGCAATGGCAAACAACGGG
TCAGAGAAGAGCTTGTCGGGGTCCATGTGTAGTTTTTCAGCAAACGACAC
TTCGGTTTGGAGTTTTCTGTGTGGAGAGCTGTTAACACTTTTGCACCTGT
AATGGAATATGTGTAACATTTAGTCGTGACAGTGTTCGATCGGGGGGGAT
GTCGCTGTAATAATAAGCGTTGCAACATTGAACGGTGCCACATATGTCCA
CACCTGAAGTCCGCGAGTAGTTTATTACGTGTGCATAGTACGTAAGGTCG
GTGTTTTCCTGTGCTGCCTGCGCGTGCGAGCTTTTTTTTTGCTCCATGTA
GTTGTCCGATTTGTTTTGCGTGAGGGCTGAAGTTGAATCAAATGAATGAA
CCGCAGCAGGCAATGAATTGTCACGACTCGCTTTGTTTTAACCCAAACAA
ACGCGGGTTCGAGACGCTGCTATTACAATACAGCGTACTACTGCCTGTAT
CCCTGGGACTTCCTCGCGATCCATCCTTCGTTGTAGAAAATATCGCGGGT
TATTATTTCACGATTTTTTTCCTTCCGTTCTTTGTATCTAGAGTCTACTT
TTTGGTAGGAAGAGATAAATTATGCTGGTAGTTTCCCGATTGTGGACCGT
AGACTTTTCGGCCAAAACATTTGATAGTATAATATGGGATACGGTGCACT
CACTGGCTGTGCTGCACTTATTCTATATTGTGGAGTATGCGTTGGACGGT
TGGACTTCGGCTTGGGCCCTCCCATATTTGGAGATGCGAGTACCTCAAAA
TTACAAGTAAATTAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3106:16498..18514-

>mRNA_H-paniculata_contig3106.8400.1 ID=mRNA_H-paniculata_contig3106.8400.1|Name=mRNA_H-paniculata_contig3106.8400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig3106:16498..18514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGATGTCACCGAGCTCCACTGCGTCAACCGCAGCAAGGTGAAGGCAGT
GGGGTCGGAGTCTCTCCCGCCCGACGAGCAAGAACTAGCAGATGCGTGGG
ATGATGTCACCGAGCTCCACTGCGTCAACCGCAGCAAGGTGAAGGCAGTG
GGGTCGGAGTCTCTCCCGCCCGACGAGCAAGAACTAGCAGATGCGTGGGT
TCGAATGCTTACTCAGGTCCCGCGCATCAGCGACCCGAAAGCGATAGCGA
TTGCTCAACATTACCCCTTGCCTCGAGCGCTTGTCGCCGCGCTAACGGAC
CCTGCGGTGCCCGAGGAGCAGCGAGCTGTTCTCCTCGCCGACAAGATGGG
TTCGAATCGGCACGAGGGAAAGCTCGCACGGCGGGTGTTCGAGCTCTTCA
CGCAGGAGGACGGCGACTTCGTGCTGACTTGAGTTCGAATGCTTACTCAG
GTCCCGCGCATCAGCGACCCGAAAGCGATAGCGATTGCTCAACATTACCC
CTTGCCTCGAGCGCTTGTCGCCGCGCTAACGGACCCTGCGGTGCCCGAGG
AGCAGCGAGCTGTTCTCCTCGCCGACAAGATGGGTTCGAATCGGCACGAG
GGAAAGCTCGCACGGCGGGTGTTCGAGCTCTTCACGCAGGAGGACGGCGA
CTTCGTGCTGACTTGA
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