mRNA_H-paniculata_contig3104.8396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3104.8396.1
Unique NamemRNA_H-paniculata_contig3104.8396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3104.8396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3104contigH-paniculata_contig3104:2091..2731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size247
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3104.8396.1prot_H-paniculata_contig3104.8396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3104 2117..2731 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.5378582-UTR-H-paniculata_contig3104:2090..21161622929954.5378582-UTR-H-paniculata_contig3104:2090..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3104 2091..2116 +
1691481085.0926256-UTR-H-paniculata_contig3104:2090..21161691481085.0926256-UTR-H-paniculata_contig3104:2090..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3104 2091..2116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.551694-CDS-H-paniculata_contig3104:2116..22241622929954.551694-CDS-H-paniculata_contig3104:2116..2224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3104 2117..2224 +
1691481085.1038592-CDS-H-paniculata_contig3104:2116..22241691481085.1038592-CDS-H-paniculata_contig3104:2116..2224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3104 2117..2224 +
1622929954.5631733-CDS-H-paniculata_contig3104:2620..27311622929954.5631733-CDS-H-paniculata_contig3104:2620..2731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3104 2621..2731 +
1691481085.1134257-CDS-H-paniculata_contig3104:2620..27311691481085.1134257-CDS-H-paniculata_contig3104:2620..2731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3104 2621..2731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3104.8396.1

>prot_H-paniculata_contig3104.8396.1 ID=prot_H-paniculata_contig3104.8396.1|Name=mRNA_H-paniculata_contig3104.8396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MSLGNFLRCYLAFNPLHYLCSTRRFCRMFRSSSRKERIEVDFLLRRFLRS
SLGGPGGLLLRDSLNHSLHRRGL
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mRNA from alignment at H-paniculata_contig3104:2091..2731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3104.8396.1 ID=mRNA_H-paniculata_contig3104.8396.1|Name=mRNA_H-paniculata_contig3104.8396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=641bp|location=Sequence derived from alignment at H-paniculata_contig3104:2091..2731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCTGCCCCTCTACTGACGTGTGATGTCGCTTGGAAATTTCCTCAGG
TGCTATCTAGCTTTCAATCCACTGCACTATTTATGCAGCACGCGTAGGTT
TTGTCGGATGTTCCGTTCATCATCTCGAAAAGAAGTAAGTGAGCCTTTAG
GGGAAGTTAGTTCTAAGCGGGAGTATTTCTTTCTCTCCGCCTCCCTTTTC
TCCTTCTTTTCCCTCCTGTAACACGCTGAAATTAGTACATCGAAAAAGAC
AGAGATATGGAAGTATGGAAGTATGGAAATATGGAAATATGGAAATATGG
AAATATGGAAGTATGGAAGTATAGAAATATAGTACATGAACAATGTAGGC
AAATATTGCACTTGTTTGTTCATTTTTTGGGGAGTAAATTTCGAAAAAAT
CGAAAAAATCGAAAAAAAACAACTATCGAGGGGCAAGGGAAATAATAGAG
GTCTCGCCTGAACTTAACAAAGGTACTCCCTATGCTTTGTTTCGCTCAAC
ATTTTTGTCATTTCATACCTGACGATGCAGCGCATCGAAGTCGACTTCTT
GCTGCGCCGCTTCCTTCGCAGCTCGCTCGGCGGCCCCGGCGGTCTCCTGC
TTCGCGACTCGCTCAACCACTCTCTGCATCGCCGAGGCCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig3104:2091..2731+

>mRNA_H-paniculata_contig3104.8396.1 ID=mRNA_H-paniculata_contig3104.8396.1|Name=mRNA_H-paniculata_contig3104.8396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig3104:2091..2731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCTTGGAAATTTCCTCAGGTGCTATCTAGCTTTCAATCCACTGCA
CTATTTATGCAGCACGCGTAGGTTTTGTCGGATGTTCCGTTCATCATCTC
GAAAAGAAATGTCGCTTGGAAATTTCCTCAGGTGCTATCTAGCTTTCAAT
CCACTGCACTATTTATGCAGCACGCGTAGGTTTTGTCGGATGTTCCGTTC
ATCATCTCGAAAAGAACGCATCGAAGTCGACTTCTTGCTGCGCCGCTTCC
TTCGCAGCTCGCTCGGCGGCCCCGGCGGTCTCCTGCTTCGCGACTCGCTC
AACCACTCTCTGCATCGCCGAGGCCTTCGCATCGAAGTCGACTTCTTGCT
GCGCCGCTTCCTTCGCAGCTCGCTCGGCGGCCCCGGCGGTCTCCTGCTTC
GCGACTCGCTCAACCACTCTCTGCATCGCCGAGGCCTT
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