mRNA_H-paniculata_contig3100.8385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3100.8385.1
Unique NamemRNA_H-paniculata_contig3100.8385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: D7FVE7_ECTSI (Glutamate synthase (NADH/NADPH-dependent) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVE7_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 1.930e-115
Identity = 161/178 (90.45%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            G+HFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPD+RAP NPWPQWPK+FG+DYGHGEVRAVFGEDPR+YSVMT +FL DD+GNV GLIT++VEV  DGIKQI GTEKEWPAQLVVLAMGFVSPE+AISKPLKLELDQ
Sbjct:  316 GVHFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDSRAPGNPWPQWPKIFGIDYGHGEVRAVFGEDPRQYSVMTKEFLSDDDGNVRGLITVEVEVTKDGIKQIEGTEKEWPAQLVVLAMGFVSPESAISKPLKLELDQ 493
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A836CI68_9STRA (Glutamate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI68_9STRA)

HSP 1 Score: 310 bits (795), Expect = 5.410e-101
Identity = 141/178 (79.21%), Postives = 160/178 (89.89%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            GIHFAMEFLTKNQKRLLMT DG L+SNWD GF++AEGKDVIVIGGGDTGTDCIGTSMRHRCRS+VNFELLP+PP+ RAP+NPWPQWPKVFGVDYGHGEVRAVFG DPR+YS+MT+KF+GD++GN+  L T++VEV  DGIK +PG+E+EWP QLVVLAMGFVSPE  IS  L L LDQ
Sbjct:  314 GIHFAMEFLTKNQKRLLMTRDGNLQSNWDAGFVTAEGKDVIVIGGGDTGTDCIGTSMRHRCRSLVNFELLPRPPNARAPTNPWPQWPKVFGVDYGHGEVRAVFGVDPRQYSIMTSKFIGDEDGNLKALQTVNVEVTADGIKHVPGSEREWPCQLVVLAMGFVSPEHHISSALNLTLDQ 491
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: I2CNZ7_NANGC (Glutamate synthase (NADPH/NADH) small chain n=2 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNZ7_NANGC)

HSP 1 Score: 290 bits (742), Expect = 5.780e-93
Identity = 128/178 (71.91%), Postives = 155/178 (87.08%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            GIHFAMEFLTKNQKRL+MT +G+LES WD  FI+AEGKDVIV+GGGDTGTDCIGTSMRHRC+S+VNFEL+P+PP+ RAP NPWPQWPK++G+DYGH EV+AVFG DPR+YSVMT +F+ D +GNV GL+T++VEV   GI  IPGTEKEWPA LV+LAMGF++PE+ I   L L++DQ
Sbjct:  322 GIHFAMEFLTKNQKRLMMTREGRLESGWDKSFITAEGKDVIVVGGGDTGTDCIGTSMRHRCKSIVNFELMPRPPNERAPHNPWPQWPKIYGMDYGHAEVQAVFGRDPREYSVMTKEFVKDQQGNVKGLVTVNVEVSAKGITPIPGTEKEWPADLVILAMGFMNPESTIPSGLSLDVDQ 499
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A7R9W4H1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4H1_9STRA)

HSP 1 Score: 273 bits (698), Expect = 4.070e-90
Identity = 125/179 (69.83%), Postives = 151/179 (84.36%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGGF-ISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            G+HFAMEFLT+NQK+LLMT DG +ES W+    I+A GKDVIVIGGGDTGTDCIGTSMRHRC+S+ NFEL+PQPP  RAP NPWPQWP+VFGVDYGH EV+AVFG+DPR YSVMT +F+GDD+GN+TGL+T DVE+   G + I G+E+EWPA LVVL+MGF+SPE  ++  L L+LDQ
Sbjct:   35 GVHFAMEFLTQNQKKLLMTKDGTIESQWERDHHITAAGKDVIVIGGGDTGTDCIGTSMRHRCKSVTNFELMPQPPMERAPDNPWPQWPRVFGVDYGHAEVQAVFGKDPRVYSVMTKEFVGDDDGNLTGLVTQDVEITSKGPRAIEGSEREWPADLVVLSMGFLSPEDYVASELGLDLDQ 213
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A7S2KJG9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJG9_9STRA)

HSP 1 Score: 272 bits (696), Expect = 4.560e-89
Identity = 126/179 (70.39%), Postives = 150/179 (83.80%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGG-FISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            G+HFAMEFLTKNQK+LLMT +G+LESNWD   FI A GK+VIVIGGGDTGTDCIGTSMRHRC+S+VNFEL+P+PP  R P NPWPQWP+VFGVDYGH EV AVFG+DPR YSVMT +F+GD+EGNV  LIT DVE+ P+G + I  +E+EWP  L VL+MGFVSPE  I + L+L++DQ
Sbjct:   72 GVHFAMEFLTKNQKKLLMTKEGRLESNWDKNKFIDAAGKNVIVIGGGDTGTDCIGTSMRHRCKSVVNFELMPKPPPQRGPDNPWPQWPRVFGVDYGHAEVIAVFGKDPRVYSVMTKEFIGDEEGNVKALITQDVEMTPNGPRAIEDSEREWPCDLCVLSMGFVSPEQYIIEDLQLDVDQ 250
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A7S2H4Y2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H4Y2_9STRA)

HSP 1 Score: 272 bits (695), Expect = 4.150e-88
Identity = 126/179 (70.39%), Postives = 149/179 (83.24%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWD-GGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            G+HFAMEFLT NQKRLLMT +G LES W+   +I+A GKDVIVIGGGDTGTDCIGTSMRHRC+S+ NFEL+PQPP  RAP+NPWPQWP+VFGVDYGH EV+AV+G+DPR YSVMT +F+GD+EGNV  L+T DVEV P G K I G+EKEWP  L VL+MGF+SPE+ I   L L++DQ
Sbjct:  128 GVHFAMEFLTANQKRLLMTKEGTLESKWEKDNWITAAGKDVIVIGGGDTGTDCIGTSMRHRCKSVTNFELMPQPPMERAPNNPWPQWPRVFGVDYGHAEVQAVYGKDPRVYSVMTKEFIGDEEGNVKALVTQDVEVTPQGPKAIEGSEKEWPCDLCVLSMGFLSPESYIVDELALDVDQ 306
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A7S3Y096_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y096_HETAK)

HSP 1 Score: 278 bits (712), Expect = 5.490e-88
Identity = 126/178 (70.79%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            G+HFAMEFLTKNQKRLL+T +G L+S WD  F+SAEGKDV+VIGGGDTGTDCIGTSMRHRC+S++N ELLP+PPD RAP NPWPQWPKVFGVDYGHGEVRAVFG+DPR YSVMT +FLGD EGN+  L+T++V++   GI+ + G+E E P QL VLAMGFV PE  +   LKL+ DQ
Sbjct:  365 GVHFAMEFLTKNQKRLLLTKEGNLQSGWDESFVSAEGKDVVVIGGGDTGTDCIGTSMRHRCKSILNLELLPRPPDQRAPGNPWPQWPKVFGVDYGHGEVRAVFGKDPRTYSVMTKEFLGDGEGNLRALVTVEVKLTDKGIEVVEGSEVEHPCQLAVLAMGFVHPEQLLPGELKLDTDQ 542
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A8J2WWR8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWR8_9STRA)

HSP 1 Score: 276 bits (706), Expect = 1.230e-87
Identity = 128/177 (72.32%), Postives = 150/177 (84.75%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELD 531
            GIHFAMEFLTKNQKRL+MT DG LES W G  I+AEGKDVIVIGGGDTGTDCIGTSMRHRC+S+VNFEL+ +PPD RA SNPWP+WPKV+GVDYGHGEV+AVFG+DPR+Y V+TT+FL DD+ NV GL T D ++GP G++ +P +E+EWP  LV+LAMGFVSPE  IS  L L LD
Sbjct:  324 GIHFAMEFLTKNQKRLMMTRDGTLESEW-GEHITAEGKDVIVIGGGDTGTDCIGTSMRHRCKSIVNFELMGRPPDARADSNPWPEWPKVYGVDYGHGEVQAVFGQDPREYGVITTEFLVDDDNNVKGLRTSDAKLGPSGVEIVPDSEREWPCDLVLLAMGFVSPEHDISSQLSLALD 499
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A7S3LHR0_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LHR0_9STRA)

HSP 1 Score: 275 bits (704), Expect = 6.430e-87
Identity = 129/179 (72.07%), Postives = 149/179 (83.24%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDG-GFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELDQ 534
            G+HFAMEFLT NQKRLLMT +G LES W+   FI+A GKDVIVIGGGDTGTDCIGTSMRHRC+S+ NFEL+PQPP +RAP NPWPQWP+VFGVDYGH EV+AVFGEDPR YSV+T +F+GD  GNV GL+T DVE+   G K I GTE+EWPA LVVL+MGFVSPE+ I + L L+ DQ
Sbjct:  345 GVHFAMEFLTANQKRLLMTKEGTLESKWEKENFITAAGKDVIVIGGGDTGTDCIGTSMRHRCKSVTNFELMPQPPMSRAPDNPWPQWPRVFGVDYGHAEVQAVFGEDPRVYSVLTKEFIGDGNGNVKGLVTQDVEITDKGPKAIEGTEREWPADLVVLSMGFVSPESYIVEELGLDTDQ 523
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BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Match: A0A7R9UB96_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB96_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.160e-86
Identity = 125/177 (70.62%), Postives = 149/177 (84.18%), Query Frame = 1 
Query:    1 GIHFAMEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGTSMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGEDPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLVVLAMGFVSPEAAISKPLKLELD 531
            GIH+AMEFLT NQKRLLMT +G LE+ WDG F+SAEG+DVIVIGGGDTGTDCIGTSMRHRC+S+VNFEL+P+PPD+RAP N WPQWPKVFGVDYGH EV +VFG DPR+Y+VMT +FL D+EGN+ GL+T DV+V    I+ +P +E+EW A LV+LAMGFVSPE  I + LKL  D
Sbjct:  313 GIHYAMEFLTANQKRLLMTHEGNLENAWDGSFVSAEGRDVIVIGGGDTGTDCIGTSMRHRCKSVVNFELMPRPPDSRAPGNEWPQWPKVFGVDYGHAEVASVFGRDPREYAVMTKEFLRDEEGNLKGLLTQDVQVKDGKIEAVPDSEREWRADLVLLAMGFVSPEQYIVEQLKLNTD 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3100.8385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE7_ECTSI1.930e-11590.45Glutamate synthase (NADH/NADPH-dependent) n=2 Tax=... [more]
A0A836CI68_9STRA5.410e-10179.21Glutamate synthase n=1 Tax=Tribonema minus TaxID=3... [more]
I2CNZ7_NANGC5.780e-9371.91Glutamate synthase (NADPH/NADH) small chain n=2 Ta... [more]
A0A7R9W4H1_9STRA4.070e-9069.83Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2KJG9_9STRA4.560e-8970.39Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2H4Y2_9STRA4.150e-8870.39Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3Y096_HETAK5.490e-8870.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2WWR8_9STRA1.230e-8772.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3LHR0_9STRA6.430e-8772.07Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A7R9UB96_9STRA1.160e-8670.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3100contigH-paniculata_contig3100:16405..18106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.0
Seed ortholog evalue2.6e-65
Seed eggNOG ortholog35128.Thaps269160
Preferred nameGLT1
KEGG rclassRC00006,RC00010,RC02799
KEGG koko:K00264,ko:K00266,ko:K00284,ko:K17792
KEGG TC3.A.8.1
KEGG ReactionR00021,R00093,R00114,R00248,R10086
KEGG Pathwayko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015930,GO:0016040,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0017144,GO:0019676,GO:0019740,GO:0019752,GO:0030447,GO:0032502,GO:0036267,GO:0040007,GO:0042133,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045181,GO:0046394,GO:0046686,GO:0048589,GO:0050896,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070783,GO:0071704,GO:0097054,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698
EggNOG free text desc.Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
EggNOG OGs2XB4G@2836,COG0069@1,KOG0399@2759
Ec32 ortholog descriptionGlutamate synthase (NADH/NADPH-dependent)
Ec32 orthologEc-14_000830.1
EC1.4.1.13,1.4.1.14,1.4.7.1
COG Functional cat.E
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Exons4
Model size546
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3100.8385.1prot_H-paniculata_contig3100.8385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3100 16405..18091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929953.6778867-CDS-H-paniculata_contig3100:16404..165271622929953.6778867-CDS-H-paniculata_contig3100:16404..16527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 16405..16527 -
1691481084.6588717-CDS-H-paniculata_contig3100:16404..165271691481084.6588717-CDS-H-paniculata_contig3100:16404..16527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 16405..16527 -
1622929953.6914587-CDS-H-paniculata_contig3100:17033..171621622929953.6914587-CDS-H-paniculata_contig3100:17033..17162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 17034..17162 -
1691481084.6695604-CDS-H-paniculata_contig3100:17033..171621691481084.6695604-CDS-H-paniculata_contig3100:17033..17162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 17034..17162 -
1622929953.70701-CDS-H-paniculata_contig3100:17482..176441622929953.70701-CDS-H-paniculata_contig3100:17482..17644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 17483..17644 -
1691481084.6777048-CDS-H-paniculata_contig3100:17482..176441691481084.6777048-CDS-H-paniculata_contig3100:17482..17644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 17483..17644 -
1622929953.721875-CDS-H-paniculata_contig3100:17974..180911622929953.721875-CDS-H-paniculata_contig3100:17974..18091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 17975..18091 -
1691481084.6856554-CDS-H-paniculata_contig3100:17974..180911691481084.6856554-CDS-H-paniculata_contig3100:17974..18091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3100 17975..18091 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929953.73193-UTR-H-paniculata_contig3100:18091..181061622929953.73193-UTR-H-paniculata_contig3100:18091..18106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3100 18092..18106 -
1691481084.69366-UTR-H-paniculata_contig3100:18091..181061691481084.69366-UTR-H-paniculata_contig3100:18091..18106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3100 18092..18106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3100.8385.1

>prot_H-paniculata_contig3100.8385.1 ID=prot_H-paniculata_contig3100.8385.1|Name=mRNA_H-paniculata_contig3100.8385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MEFLTKNQKRLLMTGDGKLESNWDGGFISAEGKDVIVIGGGDTGTDCIGT
SMRHRCRSMVNFELLPQPPDTRAPSNPWPQWPKVFGVDYGHGEVRAVFGE
DPRKYSVMTTKFLGDDEGNVTGLITIDVEVGPDGIKQIPGTEKEWPAQLV
VLAMGFVSPEAAISKPLKLELDQVTI*
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mRNA from alignment at H-paniculata_contig3100:16405..18106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3100.8385.1 ID=mRNA_H-paniculata_contig3100.8385.1|Name=mRNA_H-paniculata_contig3100.8385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1702bp|location=Sequence derived from alignment at H-paniculata_contig3100:16405..18106- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCATTCACTTCGCGATGGAGTTCCTGACCAAGAACCAAAAGCGCCTGCT
GATGACCGGCGACGGTAAGCTGGAGAGTAACTGGGACGGTGGATTCATCT
CGGCTGAGGGCAAGGACGTGATCGTTATCGGGGTCAGTTCGAGTTTGATG
TTCTTGGCTCATTTCACTTTTGAAAAACGCTTCTCAGCTCAAGATAGTTT
TTGGTTTTGGTTTTGTGTTGGTTCCACATGTTTGGTTTTTGCAAGTCTGC
CATGCTTTTGGACAATTGTGACGACTACCTAATCTCTTTTATTTTCCACT
GTTTTCTCCTTGATATGTTTTTCGGGGGAGTTTGGTGTGCAGAAATGAAT
GACCAGATGAAGTATCAACTTTGATTCCGTCCGCCGATCGTAACCGTCTT
CCCCCTTTCTCTGCCCCCGGTAAAGCAAAACTAATGCATATTTTGTGCTT
TTTTGTGTGTAGGGAGGCGACACGGGAACTGACTGTATCGGCACCTCCAT
GAGGCACCGCTGCCGCTCGATGGTCAATTTCGAGTTGCTCCCGCAGCCGC
CGGATACGCGCGCTCCCAGCAACCCGTGGCCCCAATGGCCCAAGGTCTTT
GGTGTGGACTACGGACACGGAGAGGTGAGCAATGCTGTAGCTTCTTTATG
TCCGTGGTGGTGGTGGTGGTGGTGGTGGTGACAGAGATTCCGGTGAGATT
TTTATCAAGACCGAGAGCTGCGCTGACTAAGCTCTGGCCGCGTAGGAATA
CACCCCTTTAGGGCCACTGTTAACGACCCCGCAGTTCTTGTTGCCATCTC
TACTGGTTGGTTGGGCTGAAATGGCGATCGATGCCCTTCACTCATGGTGT
TGAAGGGACCGTAGCTACCAATGGCTTGTTGGACAAAAAAAGTACTCGTT
TTTTTCTTTTTCGGTCGCTGCGTGAATGTGGGTTTGTCGCCCAGGTGCGG
GCGGTGTTCGGGGAGGACCCTCGAAAGTACAGCGTCATGACCACGAAGTT
CCTAGGAGACGATGAAGGCAATGTGACGGGTCTCATCACAATCGACGTCG
AGGTCGGCCCGGATGGCATCAAGGTAATGGCTCGGGGGTATGGGACGATG
TGGGGACAAATGATACCGCGATGTTCTTATCTAAAATACGTGCTGGATCG
ATTTGCCTCGTCGGTGATTTTCCTGCTGCTCCCACCACCATTGCAGTTGA
TAATATCCCTAACCGTACGTCCTCTCTGTGGAGAGGTAACATGCTAAGTG
CCGGTATTTTTTTTGTGATGCCCGCTCTCATCGCGCAATGAGCCAGCTCT
GTGTGCGTGACTCAATATGCGCTCAACGTAGATGTTTTCTTGGCCGATGA
ATTCGAGTACCAGCTCGGACGCTCTATGCTCACCAAATTTCATTGAGCAC
ATTACCTTACTACCCTCGTGGCTAACTAAACAAGCTGTTTCTATTTTTCC
GTTTTCCGTTTTCCCCCTTGTGTCGTATTGTGTAATGGATTACCTTACTA
TCCTCGTGGCTGACAAAACAAGCTATTTTTTCTATTTATCCTATTCTGTT
TATCCCTTGTGTTGTATTGTGTTATGCAGCAAATCCCTGGGACTGAGAAG
GAGTGGCCGGCGCAGCTGGTTGTACTTGCGATGGGCTTCGTTAGCCCGGA
GGCCGCCATCTCCAAGCCTCTTAAGCTTGAGCTGGACCAGGTGACGATAT
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig3100:16405..18106-

>mRNA_H-paniculata_contig3100.8385.1 ID=mRNA_H-paniculata_contig3100.8385.1|Name=mRNA_H-paniculata_contig3100.8385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig3100:16405..18106- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTCCTGACCAAGAACCAAAAGCGCCTGCTGATGACCGGCGACGG
TAAGCTGGAGAGTAACTGGGACGGTGGATTCATCTCGGCTGAGGGCAAGG
ACGTGATCGTTATCGGGATGGAGTTCCTGACCAAGAACCAAAAGCGCCTG
CTGATGACCGGCGACGGTAAGCTGGAGAGTAACTGGGACGGTGGATTCAT
CTCGGCTGAGGGCAAGGACGTGATCGTTATCGGGGGAGGCGACACGGGAA
CTGACTGTATCGGCACCTCCATGAGGCACCGCTGCCGCTCGATGGTCAAT
TTCGAGTTGCTCCCGCAGCCGCCGGATACGCGCGCTCCCAGCAACCCGTG
GCCCCAATGGCCCAAGGTCTTTGGTGTGGACTACGGACACGGAGAGGGAG
GCGACACGGGAACTGACTGTATCGGCACCTCCATGAGGCACCGCTGCCGC
TCGATGGTCAATTTCGAGTTGCTCCCGCAGCCGCCGGATACGCGCGCTCC
CAGCAACCCGTGGCCCCAATGGCCCAAGGTCTTTGGTGTGGACTACGGAC
ACGGAGAGGTGCGGGCGGTGTTCGGGGAGGACCCTCGAAAGTACAGCGTC
ATGACCACGAAGTTCCTAGGAGACGATGAAGGCAATGTGACGGGTCTCAT
CACAATCGACGTCGAGGTCGGCCCGGATGGCATCAAGGTGCGGGCGGTGT
TCGGGGAGGACCCTCGAAAGTACAGCGTCATGACCACGAAGTTCCTAGGA
GACGATGAAGGCAATGTGACGGGTCTCATCACAATCGACGTCGAGGTCGG
CCCGGATGGCATCAAGCAAATCCCTGGGACTGAGAAGGAGTGGCCGGCGC
AGCTGGTTGTACTTGCGATGGGCTTCGTTAGCCCGGAGGCCGCCATCTCC
AAGCCTCTTAAGCTTGAGCTGGACCAGGTGACGATATGACAAATCCCTGG
GACTGAGAAGGAGTGGCCGGCGCAGCTGGTTGTACTTGCGATGGGCTTCG
TTAGCCCGGAGGCCGCCATCTCCAAGCCTCTTAAGCTTGAGCTGGACCAG
GTGACGATATGA
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