mRNA_H-paniculata_contig30979.8376.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30979.8376.1
Unique NamemRNA_H-paniculata_contig30979.8376.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30979.8376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30979contigH-paniculata_contig30979:2094..2495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30979.8376.1prot_H-paniculata_contig30979.8376.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30979 2149..2448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.5345168-UTR-H-paniculata_contig30979:2093..21481622929951.5345168-UTR-H-paniculata_contig30979:2093..2148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30979 2094..2148 +
1691481083.505099-UTR-H-paniculata_contig30979:2093..21481691481083.505099-UTR-H-paniculata_contig30979:2093..2148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30979 2094..2148 +
1622929951.563489-UTR-H-paniculata_contig30979:2448..24951622929951.563489-UTR-H-paniculata_contig30979:2448..2495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30979 2449..2495 +
1691481083.523242-UTR-H-paniculata_contig30979:2448..24951691481083.523242-UTR-H-paniculata_contig30979:2448..2495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30979 2449..2495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.5503554-CDS-H-paniculata_contig30979:2148..24481622929951.5503554-CDS-H-paniculata_contig30979:2148..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30979 2149..2448 +
1691481083.5145514-CDS-H-paniculata_contig30979:2148..24481691481083.5145514-CDS-H-paniculata_contig30979:2148..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30979 2149..2448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30979.8376.1

>prot_H-paniculata_contig30979.8376.1 ID=prot_H-paniculata_contig30979.8376.1|Name=mRNA_H-paniculata_contig30979.8376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MILEPDGEQPRTRSHLVGIEHVQGWFETKILPKIQRSTPHYYVKCPRISP
RNLNELIECETHREYPLPAPISFPSRTHSAQHSHSASNGYLFKSVTINT*
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mRNA from alignment at H-paniculata_contig30979:2094..2495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30979.8376.1 ID=mRNA_H-paniculata_contig30979.8376.1|Name=mRNA_H-paniculata_contig30979.8376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig30979:2094..2495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCACTGCTGCCGCTGCCCCCATCATCCTAACAACACGAACATGAAGGG
AACAGATGATCCTAGAGCCAGACGGAGAGCAACCGCGCACGCGGTCGCAT
CTCGTCGGGATTGAACACGTGCAGGGGTGGTTCGAAACGAAAATCCTCCC
AAAAATACAGCGAAGCACACCACATTATTACGTGAAGTGTCCTCGAATCT
CCCCACGTAATTTAAACGAACTAATCGAGTGTGAAACACACCGAGAGTAC
CCCCTGCCTGCCCCCATCTCCTTCCCATCGCGCACACACTCTGCACAACA
CTCTCACAGTGCTTCAAACGGGTATCTGTTCAAGTCAGTCACTATAAACA
CATGAAAATAACACAGCTTCTCGACCAATGCATGCAAGGTCAACCCTTCA
CG
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Coding sequence (CDS) from alignment at H-paniculata_contig30979:2094..2495+

>mRNA_H-paniculata_contig30979.8376.1 ID=mRNA_H-paniculata_contig30979.8376.1|Name=mRNA_H-paniculata_contig30979.8376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig30979:2094..2495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCTAGAGCCAGACGGAGAGCAACCGCGCACGCGGTCGCATCTCGT
CGGGATTGAACACGTGCAGGGGTGGTTCGAAACGAAAATCCTCCCAAAAA
TACAGCGAAGCACACCACATTATTACGTGAAGTGTCCTCGAATCTCCCCA
CGTAATTTAAACGAACTAATCGAGTGTGAAACACACCGAGAGTACCCCCT
GCCTGCCCCCATCTCCTTCCCATCGCGCACACACTCTGCACAACACTCTC
ACAGTGCTTCAAACGGGTATCTGTTCAAGTCAGTCACTATAAACACATGA
ATGATCCTAGAGCCAGACGGAGAGCAACCGCGCACGCGGTCGCATCTCGT
CGGGATTGAACACGTGCAGGGGTGGTTCGAAACGAAAATCCTCCCAAAAA
TACAGCGAAGCACACCACATTATTACGTGAAGTGTCCTCGAATCTCCCCA
CGTAATTTAAACGAACTAATCGAGTGTGAAACACACCGAGAGTACCCCCT
GCCTGCCCCCATCTCCTTCCCATCGCGCACACACTCTGCACAACACTCTC
ACAGTGCTTCAAACGGGTATCTGTTCAAGTCAGTCACTATAAACACATGA
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