mRNA_H-paniculata_contig3097.8375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3097.8375.1
Unique NamemRNA_H-paniculata_contig3097.8375.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.800e-25
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
            Q +PVELK+LA L++L RGN F D+   S +S  T    FH+FC++FA  LYDE ++LPTG+ L KVM +YD++GF G VGS DVTHI
Sbjct:  167 QAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHI 254          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.290e-25
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  119 PVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI---KC 379
            PVE K+LA L +LGRGN F  + Q S MS +T Q  FHKFC+HFA  +YDE+I+LP+ Q   L+ VM +YD+LGF+G +GS+DVTHI   KC
Sbjct:  121 PVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKC 212          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.280e-24
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  131 KILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
            ++L +L++LGRGN FDD+ Q SLMS+  A   FHKFC+HFA  L++E+I+LPTG   ++VM  YD+LG TG +GS DVTHI
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 83          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.400e-24
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  131 KILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
            KIL +L++LGRGN FDD+ Q SLMS+  A   FHKFC+HFA  L++E+I+LPTG   ++VM  YD+LG TG +GS DVTHI
Sbjct:  250 KILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 330          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.130e-24
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query:   74 VVPLCRRG*RKIQCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHIK 376
            V P   R     QC+P+ELK+L  L+VLGRGN F DV+Q SLMS  TA+ +FH+FC+ F+ GL+ + + LP G+ L+KV  EY  +G  G V S+D THI 
Sbjct:   93 VFPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHIS 193          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 9.690e-24
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI---KC 379
            Q  PVE K+LA L +LGRGN F  + Q S MS  T Q  FHKFC+HFA  +YDE+I+LP+ Q   L+ VM +YD+LGF+G +GS+DVTHI   KC
Sbjct:   91 QSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKC 185          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.520e-23
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  119 PVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQA--LEKVMHEYDQLGFTGTVGSIDVTHI 373
            PVE K+LA L +LGRGN F  + Q S MS  T Q  FHKFC HFA  +YDE I LPT ++  L+ VM +YD+LGFTG VGS+DVTHI
Sbjct:   81 PVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHI 167          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.250e-23
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI---KC 379
            Q  PVE K+LA L +LGRGN F  + Q S MS +T Q  FH FC+HFA  +YDE+I+LP+ Q   L+ VM +YD+LGF+G +GS+DVTHI   KC
Sbjct:  118 QSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKC 212          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.280e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI 373
            +C PVE K+LA L +LGRGN F  +   S MS  T Q  FH+FCEHFA  +YDE+IFLP+ +   L++VM +Y++LGF G +GS DVTHI
Sbjct:  120 RCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHI 209          
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.130e-23
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  113 CIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
            C+P+ELK+L  L+VLGRGN F DV+ FSLMS +TA+ +FH+FC  FA GL+   I LP G+ L +V   Y  LG+ G VGSID TH+
Sbjct:  204 CVPLELKVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHV 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JPH7_9PHAE1.800e-2555.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE6.290e-2556.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KH50_9PHAE1.280e-2456.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE2.400e-2459.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE5.130e-2449.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE9.690e-2455.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.520e-2359.77DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FPI7_ECTSI4.250e-2354.74Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JBE2_9PHAE6.280e-2354.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE9.130e-2355.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3097contigH-paniculata_contig3097:13103..14114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3097.8375.1prot_H-paniculata_contig3097.8375.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3097 13935..14114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.451266-UTR-H-paniculata_contig3097:13102..132351622929951.451266-UTR-H-paniculata_contig3097:13102..13235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3097 13103..13235 +
1691481083.4660945-UTR-H-paniculata_contig3097:13102..132351691481083.4660945-UTR-H-paniculata_contig3097:13102..13235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3097 13103..13235 +
1622929951.475796-UTR-H-paniculata_contig3097:13868..139341622929951.475796-UTR-H-paniculata_contig3097:13868..13934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3097 13869..13934 +
1691481083.4803588-UTR-H-paniculata_contig3097:13868..139341691481083.4803588-UTR-H-paniculata_contig3097:13868..13934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3097 13869..13934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.488177-CDS-H-paniculata_contig3097:13934..141141622929951.488177-CDS-H-paniculata_contig3097:13934..14114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3097 13935..14114 +
1691481083.4946146-CDS-H-paniculata_contig3097:13934..141141691481083.4946146-CDS-H-paniculata_contig3097:13934..14114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3097 13935..14114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3097.8375.1

>prot_H-paniculata_contig3097.8375.1 ID=prot_H-paniculata_contig3097.8375.1|Name=mRNA_H-paniculata_contig3097.8375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTV
GSIDVTHIKC
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mRNA from alignment at H-paniculata_contig3097:13103..14114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3097.8375.1 ID=mRNA_H-paniculata_contig3097.8375.1|Name=mRNA_H-paniculata_contig3097.8375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1012bp|location=Sequence derived from alignment at H-paniculata_contig3097:13103..14114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAATTTAGGCGCCGTCTCCGTATCCCTCACGTGTTCTTCCTCGGGCTG GTAAGCTTAGCGATGGAGAAGAGGTGGTTCCTCTCTGCAGAAGAGGATGA CGCAAGATCCAGTGCATCCCAGTTGAGCTGAAGGTGGGTCGATATCTCTA GCTTGACAACTGTGCAATGGCATTGGAGGTACTGGTTTGATGATGCTGCA GTTGACACTATATCTGACGTGCATGATGCTGGGAAGTACGGTGCCGTAAC TTTACCTAACTATACCGTACTGCACTATATTAATAGTGTATAGTACTGCA CTATCCCCACTGTACAATACTGCACTGCACACTGCTGTACTAAAACTACT TCGTCGTGTACTGTACAGTACAAGCCACCTCCCTCGATCAAATTACAGAT ATTGCTCTCTGCTGTGTGGGTTGTCCATGTTTATCCCCCGCAATGTTATT GTGACACTGTTCGGCATTGCATGCCGAGACTATTCCATAAGCGCAGTCAG TCAGCGATATCGTGGACTATGGGTACCTAGGACACGCAATGAAAATATGT GATGGTTCCCTCCTACATGTGCGCACTACCTCGCGAACGGATGACCCTGG AGTCGGCTAGCGTATCAGGAGCGATAGGTGGACGGCATGTAACGTTGCCC ATGTTTTTCAGCCAACGGCAAACTACCTGTCACGATCGGTCATACCAGCT CACGTCCTCAGCCAAGCGAAACCTAATATGTTTTGCGTGTGTTCCCCCCC CTCCCCCTTGTACCAGATTCTTGCTTCCCTTGAGGTACTGGGTAGGGGGA ACTCCTTTGACGACGTCTCCCAGTTTTCCCTCATGAGCGAGTCGACGGCA CAAGTCGCGTTCCACAAGTTCTGCGAGCATTTCGCGTTGGGGCTGTATGA TGAAAACATCTTCCTCCCTACCGGACAGGCTCTCGAGAAGGTCATGCATG AGTATGACCAGTTGGGATTCACCGGGACAGTCGGCTCAATCGATGTTACC CACATCAAATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3097:13103..14114+

>mRNA_H-paniculata_contig3097.8375.1 ID=mRNA_H-paniculata_contig3097.8375.1|Name=mRNA_H-paniculata_contig3097.8375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig3097:13103..14114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGAGTCGACGGCACAAGTCGCGTTCCACAAGTTCTGCGAGCATTT
CGCGTTGGGGCTGTATGATGAAAACATCTTCCTCCCTACCGGACAGGCTC
TCGAGAAGGTCATGCATGAGTATGACCAGTTGGGATTCACCGGGACAGTC
GGCTCAATCGATGTTACCCACATCAAATGCATGAGCGAGTCGACGGCACA
AGTCGCGTTCCACAAGTTCTGCGAGCATTTCGCGTTGGGGCTGTATGATG
AAAACATCTTCCTCCCTACCGGACAGGCTCTCGAGAAGGTCATGCATGAG
TATGACCAGTTGGGATTCACCGGGACAGTCGGCTCAATCGATGTTACCCA
CATCAAATGC
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