mRNA_H-paniculata_contig3097.8375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.800e-25 Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2
Query: 110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
Q +PVELK+LA L++L RGN F D+ S +S T FH+FC++FA LYDE ++LPTG+ L KVM +YD++GF G VGS DVTHI
Sbjct: 167 QAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHI 254
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 103 bits (258), Expect = 6.290e-25 Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 2
Query: 119 PVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI---KC 379
PVE K+LA L +LGRGN F + Q S MS +T Q FHKFC+HFA +YDE+I+LP+ Q L+ VM +YD+LGF+G +GS+DVTHI KC
Sbjct: 121 PVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKC 212
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.280e-24 Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query: 131 KILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
++L +L++LGRGN FDD+ Q SLMS+ A FHKFC+HFA L++E+I+LPTG ++VM YD+LG TG +GS DVTHI
Sbjct: 3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 83
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 105 bits (263), Expect = 2.400e-24 Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 2
Query: 131 KILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
KIL +L++LGRGN FDD+ Q SLMS+ A FHKFC+HFA L++E+I+LPTG ++VM YD+LG TG +GS DVTHI
Sbjct: 250 KILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 330
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 104 bits (260), Expect = 5.130e-24 Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query: 74 VVPLCRRG*RKIQCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHIK 376
V P R QC+P+ELK+L L+VLGRGN F DV+Q SLMS TA+ +FH+FC+ F+ GL+ + + LP G+ L+KV EY +G G V S+D THI
Sbjct: 93 VFPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHIS 193
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 103 bits (257), Expect = 9.690e-24 Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 2
Query: 110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI---KC 379
Q PVE K+LA L +LGRGN F + Q S MS T Q FHKFC+HFA +YDE+I+LP+ Q L+ VM +YD+LGF+G +GS+DVTHI KC
Sbjct: 91 QSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKC 185
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.520e-23 Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 2
Query: 119 PVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQA--LEKVMHEYDQLGFTGTVGSIDVTHI 373
PVE K+LA L +LGRGN F + Q S MS T Q FHKFC HFA +YDE I LPT ++ L+ VM +YD+LGFTG VGS+DVTHI
Sbjct: 81 PVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHI 167
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 102 bits (253), Expect = 4.250e-23 Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 2
Query: 110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI---KC 379
Q PVE K+LA L +LGRGN F + Q S MS +T Q FH FC+HFA +YDE+I+LP+ Q L+ VM +YD+LGF+G +GS+DVTHI KC
Sbjct: 118 QSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKC 212
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 102 bits (253), Expect = 6.280e-23 Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query: 110 QCIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQ--ALEKVMHEYDQLGFTGTVGSIDVTHI 373
+C PVE K+LA L +LGRGN F + S MS T Q FH+FCEHFA +YDE+IFLP+ + L++VM +Y++LGF G +GS DVTHI
Sbjct: 120 RCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHI 209
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE) HSP 1 Score: 102 bits (253), Expect = 9.130e-23 Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 2
Query: 113 CIPVELKILASLEVLGRGNSFDDVSQFSLMSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVGSIDVTHI 373
C+P+ELK+L L+VLGRGN F DV+ FSLMS +TA+ +FH+FC FA GL+ I LP G+ L +V Y LG+ G VGSID TH+
Sbjct: 204 CVPLELKVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHV 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3097.8375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3097.8375.1 >prot_H-paniculata_contig3097.8375.1 ID=prot_H-paniculata_contig3097.8375.1|Name=mRNA_H-paniculata_contig3097.8375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp MSESTAQVAFHKFCEHFALGLYDENIFLPTGQALEKVMHEYDQLGFTGTVback to top mRNA from alignment at H-paniculata_contig3097:13103..14114+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3097.8375.1 ID=mRNA_H-paniculata_contig3097.8375.1|Name=mRNA_H-paniculata_contig3097.8375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1012bp|location=Sequence derived from alignment at H-paniculata_contig3097:13103..14114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3097:13103..14114+ >mRNA_H-paniculata_contig3097.8375.1 ID=mRNA_H-paniculata_contig3097.8375.1|Name=mRNA_H-paniculata_contig3097.8375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig3097:13103..14114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |