mRNA_H-paniculata_contig3097.8374.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3097.8374.1
Unique NamemRNA_H-paniculata_contig3097.8374.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3097.8374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3097contigH-paniculata_contig3097:4309..4874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size566
Cds size507
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.3629744-CDS-H-paniculata_contig3097:4308..48151622929951.3629744-CDS-H-paniculata_contig3097:4308..4815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3097 4309..4815 +
1691481083.4417324-CDS-H-paniculata_contig3097:4308..48151691481083.4417324-CDS-H-paniculata_contig3097:4308..4815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3097 4309..4815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.3755858-UTR-H-paniculata_contig3097:4815..48741622929951.3755858-UTR-H-paniculata_contig3097:4815..4874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3097 4816..4874 +
1691481083.4544103-UTR-H-paniculata_contig3097:4815..48741691481083.4544103-UTR-H-paniculata_contig3097:4815..4874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3097 4816..4874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3097.8374.1prot_H-paniculata_contig3097.8374.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3097 4309..4815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3097.8374.1

>prot_H-paniculata_contig3097.8374.1 ID=prot_H-paniculata_contig3097.8374.1|Name=mRNA_H-paniculata_contig3097.8374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MSCCCRGIASSPARRAILCSTSSASWQNSLITRLFFLQLQHTAWRVGVAH
PSTSPCTPPPPVSAPPQQPTRLPRAFYASSPSQWLLQHLACAALLLHALF
FRPDIPPPPLHELRQPYGCGHGHPQLSSVLSCTFAALLRRLRASGQYRST
GAQGLPTRSCQYAQGLHL*
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mRNA from alignment at H-paniculata_contig3097:4309..4874+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3097.8374.1 ID=mRNA_H-paniculata_contig3097.8374.1|Name=mRNA_H-paniculata_contig3097.8374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at H-paniculata_contig3097:4309..4874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTGCTGTTGTAGAGGCATTGCGAGCTCCCCTGCACGCCGAGCCAT
ACTCTGCTCAACTTCCTCCGCGAGCTGGCAGAACTCATTGATCACTCGTC
TTTTCTTTCTTCAACTTCAGCATACTGCTTGGAGAGTTGGTGTAGCTCAT
CCTTCAACATCGCCGTGTACGCCTCCTCCGCCTGTCTCCGCTCCTCCTCA
GCAGCCAACTCGTCTTCCGCGTGCATTCTACGCCTCTTCTCCGTCTCAAT
GGCTGCTTCAACATCTCGCGTGCGCAGCTCTGCTACTTCACGCACTGTTT
TTTCGACCTGACATTCCTCCTCCACCGCTGCACGAGCTTCGACAGCCTTA
CGGCTGTGGACACGGGCATCCTCAACTTTCTTCTGTGCTTTCTTGTACCT
TCGCTGCGCTTCTTAGACGTCTCCGCGCTTCTGGGCAATATCGGTCCACT
GGCGCGCAGGGGCTTCCGACACGGTCATGCCAGTACGCGCAAGGTCTTCA
TCTCTAACCTTTAGAAGCGTTCTTTTTCGCGCCAGTTTCGATCGTTGTTT
GCCCTTGCCTTTCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3097:4309..4874+

>mRNA_H-paniculata_contig3097.8374.1 ID=mRNA_H-paniculata_contig3097.8374.1|Name=mRNA_H-paniculata_contig3097.8374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig3097:4309..4874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTGCTGTTGTAGAGGCATTGCGAGCTCCCCTGCACGCCGAGCCAT
ACTCTGCTCAACTTCCTCCGCGAGCTGGCAGAACTCATTGATCACTCGTC
TTTTCTTTCTTCAACTTCAGCATACTGCTTGGAGAGTTGGTGTAGCTCAT
CCTTCAACATCGCCGTGTACGCCTCCTCCGCCTGTCTCCGCTCCTCCTCA
GCAGCCAACTCGTCTTCCGCGTGCATTCTACGCCTCTTCTCCGTCTCAAT
GGCTGCTTCAACATCTCGCGTGCGCAGCTCTGCTACTTCACGCACTGTTT
TTTCGACCTGACATTCCTCCTCCACCGCTGCACGAGCTTCGACAGCCTTA
CGGCTGTGGACACGGGCATCCTCAACTTTCTTCTGTGCTTTCTTGTACCT
TCGCTGCGCTTCTTAGACGTCTCCGCGCTTCTGGGCAATATCGGTCCACT
GGCGCGCAGGGGCTTCCGACACGGTCATGCCAGTACGCGCAAGGTCTTCA
TCTCTAAATGAGCTGCTGTTGTAGAGGCATTGCGAGCTCCCCTGCACGCC
GAGCCATACTCTGCTCAACTTCCTCCGCGAGCTGGCAGAACTCATTGATC
ACTCGTCTTTTCTTTCTTCAACTTCAGCATACTGCTTGGAGAGTTGGTGT
AGCTCATCCTTCAACATCGCCGTGTACGCCTCCTCCGCCTGTCTCCGCTC
CTCCTCAGCAGCCAACTCGTCTTCCGCGTGCATTCTACGCCTCTTCTCCG
TCTCAATGGCTGCTTCAACATCTCGCGTGCGCAGCTCTGCTACTTCACGC
ACTGTTTTTTCGACCTGACATTCCTCCTCCACCGCTGCACGAGCTTCGAC
AGCCTTACGGCTGTGGACACGGGCATCCTCAACTTTCTTCTGTGCTTTCT
TGTACCTTCGCTGCGCTTCTTAGACGTCTCCGCGCTTCTGGGCAATATCG
GTCCACTGGCGCGCAGGGGCTTCCGACACGGTCATGCCAGTACGCGCAAG
GTCTTCATCTCTAA
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