mRNA_H-paniculata_contig3096.8372.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig3096.8372.1
Unique Name	mRNA_H-paniculata_contig3096.8372.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.250e-15
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1

Query:    1 GCKWLD-FFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WLD FF RHP LSERS+RIYE NRI +DDE  L+ FY  + E +   ++  DH+WN DET
Sbjct:  109 GRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDET 171

[Close]

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.670e-15
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1

Query:    1 GCKWLD-FFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WLD FF RHP LSERS+RIYE NRI +DDE  L+ FY  + E +   ++  DH+WN DET
Sbjct:  109 GRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDET 171

[Close]

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5JGP6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.640e-14
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1

Query:    1 GCKWLD-FFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WLD FF RHP LSE S+RIYE NRI +DDE  L+ FY  + E +   ++  DH+WN DET
Sbjct:   68 GRSWLDGFFKRHPALSECSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDET 130

[Close]

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5L513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L513_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.440e-14
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 1

Query:    1 GCKWL-DFFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WL  F  RHPR+SER++RIYE NRIT D EP +  FY  WA  L   + + DHV N DET
Sbjct:   61 GKDWLAGFLKRHPRVSERTTRIYEANRITEDKEPRIVEFYKKWAALLDEHKPEADHVHNTDET 123

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BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5L3L5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-13
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1

Query:    1 GCKWLD-FFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDE 183
            G  WLD FF RHP LSERS+RIYE NRI +DDE  L+ FY  + E +   ++  DH+WN  E
Sbjct:  155 GRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTGE 216

[Close]

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5K547_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K547_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.880e-13
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1

Query:    1 GCKWLD-FFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WL  F  RHPR++ERS+ IYE NRIT D+EP +  FY  WA  L  ++L+ +HV N DET
Sbjct:  108 GKDWLGGFLRRHPRVAERSTHIYEANRITEDEEPRMVQFYERWAALLDEVKLEANHVHNTDET 170

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BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.440e-13
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1

Query:    1 GCKWL-DFFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WL  F  RHPR++ERS+RIYE NRIT D+EP +  FY  WA  L   + + +HV N DET
Sbjct:  108 GKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDET 170

[Close]

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5KKS3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.700e-13
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1

Query:    1 GCKWL-DFFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WL  F  RHPR+ ER++RIYE NR+T + EP +  FY  WA  L +L+ + DHV N DET
Sbjct:  121 GKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDET 183

[Close]

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.540e-13
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1

Query:    1 GCKWL-DFFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDETDG 192
            G  WL  F  RHPR++ERS+RIYE NRIT D+EP +  FY  WA  L   + + +HV N DET G
Sbjct:   87 GKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDETAG 151

[Close]

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.390e-13
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1

Query:    1 GCKWL-DFFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQLKTDHVWNIDET 186
            G  WL  F  RHPR+ ER++RIYE NR+T + EP +  FY  WA  L +L+ + DHV N DET
Sbjct:  107 GKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDET 169

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig3096.8372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L5E2_9PHAE	4.250e-15	55.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
B2KWI5_ECTSI	4.670e-15	55.56	Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5JGP6_9PHAE	5.640e-14	53.97	DDE-1 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5L513_9PHAE	6.440e-14	53.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L3L5_9PHAE	1.600e-13	53.23	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K547_9PHAE	1.880e-13	52.38	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5JRY4_9PHAE	3.440e-13	52.38	HTH psq-type domain-containing protein n=4 Tax=Ect...	[more]
A0A6H5KKS3_9PHAE	3.700e-13	50.79	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5K4M5_9PHAE	5.540e-13	52.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV04_9PHAE	9.390e-13	50.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig3096	contig	H-paniculata_contig3096:636..833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	198
Cds size	198
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929951.1859806-CDS-H-paniculata_contig3096:635..833	1622929951.1859806-CDS-H-paniculata_contig3096:635..833	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3096 636..833 +
1691481083.33793-CDS-H-paniculata_contig3096:635..833	1691481083.33793-CDS-H-paniculata_contig3096:635..833	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3096 636..833 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig3096.8372.1	prot_H-paniculata_contig3096.8372.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig3096 636..833 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig3096:636..833+
coding sequence from alignment at H-paniculata_contig3096:636..833+

protein sequence of mRNA_H-paniculata_contig3096.8372.1

>prot_H-paniculata_contig3096.8372.1 ID=prot_H-paniculata_contig3096.8372.1|Name=mRNA_H-paniculata_contig3096.8372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
GCKWLDFFARHPRLSERSSRIYEVNRITTDDEPCLRAFYASWAETLANLQ
LKTDHVWNIDETDGQ*

mRNA from alignment at H-paniculata_contig3096:636..833+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig3096.8372.1 ID=mRNA_H-paniculata_contig3096.8372.1|Name=mRNA_H-paniculata_contig3096.8372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig3096:636..833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGCAAGTGGCTCGATTTCTTCGCGAGACACCCTCGTCTCTCCGAGCG
CAGCAGCCGCATCTACGAAGTGAACAGGATTACGACTGACGATGAACCCT
GCTTGAGAGCATTCTACGCCAGCTGGGCGGAAACGTTGGCCAACCTACAG
CTGAAGACTGATCACGTGTGGAATATCGACGAAACAGATGGACAGTAG

Coding sequence (CDS) from alignment at H-paniculata_contig3096:636..833+

>mRNA_H-paniculata_contig3096.8372.1 ID=mRNA_H-paniculata_contig3096.8372.1|Name=mRNA_H-paniculata_contig3096.8372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig3096:636..833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGCAAGTGGCTCGATTTCTTCGCGAGACACCCTCGTCTCTCCGAGCG
CAGCAGCCGCATCTACGAAGTGAACAGGATTACGACTGACGATGAACCCT
GCTTGAGAGCATTCTACGCCAGCTGGGCGGAAACGTTGGCCAACCTACAG
CTGAAGACTGATCACGTGTGGAATATCGACGAAACAGATGGACAGTAGGG
GTGCAAGTGGCTCGATTTCTTCGCGAGACACCCTCGTCTCTCCGAGCGCA
GCAGCCGCATCTACGAAGTGAACAGGATTACGACTGACGATGAACCCTGC
TTGAGAGCATTCTACGCCAGCTGGGCGGAAACGTTGGCCAACCTACAGCT
GAAGACTGATCACGTGTGGAATATCGACGAAACAGATGGACAGTAG