mRNA_H-paniculata_contig30944.8370.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30944.8370.1
Unique NamemRNA_H-paniculata_contig30944.8370.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30944.8370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30944contigH-paniculata_contig30944:1451..2606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1157
Cds size1155
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.7284198-CDS-H-paniculata_contig30944:1450..26051622929950.7284198-CDS-H-paniculata_contig30944:1450..2605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30944 1451..2605 +
1691481083.0515258-CDS-H-paniculata_contig30944:1450..26051691481083.0515258-CDS-H-paniculata_contig30944:1450..2605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30944 1451..2605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30944.8370.1prot_H-paniculata_contig30944.8370.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30944 1451..2605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30944.8370.1

>prot_H-paniculata_contig30944.8370.1 ID=prot_H-paniculata_contig30944.8370.1|Name=mRNA_H-paniculata_contig30944.8370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
RRRRRRRHSSSRIVGISRDDDMAGSAVSAEAAGIAEREDEGDWQVEGTGE
GEEDDDDDNDDDDEDEEEDEDEEGGWDEQYSAGTRRLTVLSKPIKSALFS
ETPNGARNSNNGRVHSGGDTESAPSSEAMTMMPDDEQQEEQRQQGEVTDS
QDETKRRADEVTGLSSPRGSITSAVSAAAAASPTLSSCDGRDDPSDDDGI
RDGHDDDYRRSRRRHSSSRIVGISRDDDMAGSAVSAEAAGIAEREDERDW
QVEGTEEGEDDDDAEEEEDDADEENDEEDEEGGWDEQYSAGTRRLTVLSK
PIKSALFSETPNDARSSNNGKNHSGGDTESAPSSEAMTMMTDGEQQEEQR
QQGEVTDSQDEAKRRADEVTGLSSPRGSSTSAVSA
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mRNA from alignment at H-paniculata_contig30944:1451..2606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30944.8370.1 ID=mRNA_H-paniculata_contig30944.8370.1|Name=mRNA_H-paniculata_contig30944.8370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1156bp|location=Sequence derived from alignment at H-paniculata_contig30944:1451..2606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGCCGCCGCCGCCGCCGCCACAGCAGCAGCCGGATCGTGGGCATATC
CCGCGATGACGACATGGCCGGGTCGGCGGTATCAGCAGAGGCGGCGGGGA
TTGCAGAGAGGGAGGACGAGGGAGATTGGCAGGTAGAAGGAACGGGAGAA
GGCGAGGAGGACGACGACGACGACAACGACGATGACGACGAGGACGAGGA
GGAGGACGAGGACGAGGAGGGAGGATGGGATGAGCAATACTCAGCAGGAA
CACGACGCCTAACGGTGCTGTCGAAACCCATCAAGTCCGCGCTCTTTTCT
GAGACCCCGAATGGTGCCCGTAATAGTAACAATGGCAGGGTTCACTCGGG
CGGTGATACCGAGTCGGCGCCCTCCTCGGAAGCGATGACGATGATGCCGG
ACGACGAGCAACAGGAAGAGCAAAGGCAGCAGGGCGAGGTGACTGACAGT
CAGGATGAGACGAAACGCAGGGCGGACGAGGTGACGGGCCTATCGAGTCC
TAGAGGTTCGATCACGTCGGCAGTGTCTGCGGCAGCGGCAGCGTCGCCGA
CGTTATCGTCATGCGACGGTCGGGACGATCCGAGCGATGATGATGGTATT
CGTGATGGTCATGACGACGACTACCGTCGCAGCCGCCGCCGCCACAGCAG
CAGTCGGATCGTGGGCATATCTCGCGATGACGACATGGCCGGGTCGGCGG
TATCAGCAGAGGCGGCGGGGATTGCAGAGAGGGAGGACGAGAGAGACTGG
CAGGTAGAAGGAACGGAAGAAGGCGAGGACGACGACGACGCCGAGGAGGA
GGAGGACGACGCCGACGAGGAGAACGACGAAGAGGACGAGGAGGGAGGAT
GGGATGAGCAATACTCAGCAGGAACACGACGCCTAACCGTGCTGTCGAAG
CCCATCAAGTCCGCGCTCTTTTCTGAGACCCCGAATGATGCCCGTAGTAG
TAACAATGGCAAGAATCACTCGGGCGGTGATACCGAGTCGGCGCCCTCCT
CGGAAGCGATGACGATGATGACGGACGGCGAGCAACAGGAAGAGCAAAGG
CAGCAGGGCGAGGTGACTGACAGTCAGGATGAGGCGAAACGGAGGGCGGA
CGAGGTGACGGGCCTATCGAGTCCTAGAGGTTCGAGCACGTCGGCAGTGT
CTGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig30944:1451..2606+

>mRNA_H-paniculata_contig30944.8370.1 ID=mRNA_H-paniculata_contig30944.8370.1|Name=mRNA_H-paniculata_contig30944.8370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig30944:1451..2606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGCCGCCGCCGCCGCCGCCACAGCAGCAGCCGGATCGTGGGCATATC
CCGCGATGACGACATGGCCGGGTCGGCGGTATCAGCAGAGGCGGCGGGGA
TTGCAGAGAGGGAGGACGAGGGAGATTGGCAGGTAGAAGGAACGGGAGAA
GGCGAGGAGGACGACGACGACGACAACGACGATGACGACGAGGACGAGGA
GGAGGACGAGGACGAGGAGGGAGGATGGGATGAGCAATACTCAGCAGGAA
CACGACGCCTAACGGTGCTGTCGAAACCCATCAAGTCCGCGCTCTTTTCT
GAGACCCCGAATGGTGCCCGTAATAGTAACAATGGCAGGGTTCACTCGGG
CGGTGATACCGAGTCGGCGCCCTCCTCGGAAGCGATGACGATGATGCCGG
ACGACGAGCAACAGGAAGAGCAAAGGCAGCAGGGCGAGGTGACTGACAGT
CAGGATGAGACGAAACGCAGGGCGGACGAGGTGACGGGCCTATCGAGTCC
TAGAGGTTCGATCACGTCGGCAGTGTCTGCGGCAGCGGCAGCGTCGCCGA
CGTTATCGTCATGCGACGGTCGGGACGATCCGAGCGATGATGATGGTATT
CGTGATGGTCATGACGACGACTACCGTCGCAGCCGCCGCCGCCACAGCAG
CAGTCGGATCGTGGGCATATCTCGCGATGACGACATGGCCGGGTCGGCGG
TATCAGCAGAGGCGGCGGGGATTGCAGAGAGGGAGGACGAGAGAGACTGG
CAGGTAGAAGGAACGGAAGAAGGCGAGGACGACGACGACGCCGAGGAGGA
GGAGGACGACGCCGACGAGGAGAACGACGAAGAGGACGAGGAGGGAGGAT
GGGATGAGCAATACTCAGCAGGAACACGACGCCTAACCGTGCTGTCGAAG
CCCATCAAGTCCGCGCTCTTTTCTGAGACCCCGAATGATGCCCGTAGTAG
TAACAATGGCAAGAATCACTCGGGCGGTGATACCGAGTCGGCGCCCTCCT
CGGAAGCGATGACGATGATGACGGACGGCGAGCAACAGGAAGAGCAAAGG
CAGCAGGGCGAGGTGACTGACAGTCAGGATGAGGCGAAACGGAGGGCGGA
CGAGGTGACGGGCCTATCGAGTCCTAGAGGTTCGAGCACGTCGGCAGTGT
CTGCGCGCCGCCGCCGCCGCCGCCGCCACAGCAGCAGCCGGATCGTGGGC
ATATCCCGCGATGACGACATGGCCGGGTCGGCGGTATCAGCAGAGGCGGC
GGGGATTGCAGAGAGGGAGGACGAGGGAGATTGGCAGGTAGAAGGAACGG
GAGAAGGCGAGGAGGACGACGACGACGACAACGACGATGACGACGAGGAC
GAGGAGGAGGACGAGGACGAGGAGGGAGGATGGGATGAGCAATACTCAGC
AGGAACACGACGCCTAACGGTGCTGTCGAAACCCATCAAGTCCGCGCTCT
TTTCTGAGACCCCGAATGGTGCCCGTAATAGTAACAATGGCAGGGTTCAC
TCGGGCGGTGATACCGAGTCGGCGCCCTCCTCGGAAGCGATGACGATGAT
GCCGGACGACGAGCAACAGGAAGAGCAAAGGCAGCAGGGCGAGGTGACTG
ACAGTCAGGATGAGACGAAACGCAGGGCGGACGAGGTGACGGGCCTATCG
AGTCCTAGAGGTTCGATCACGTCGGCAGTGTCTGCGGCAGCGGCAGCGTC
GCCGACGTTATCGTCATGCGACGGTCGGGACGATCCGAGCGATGATGATG
GTATTCGTGATGGTCATGACGACGACTACCGTCGCAGCCGCCGCCGCCAC
AGCAGCAGTCGGATCGTGGGCATATCTCGCGATGACGACATGGCCGGGTC
GGCGGTATCAGCAGAGGCGGCGGGGATTGCAGAGAGGGAGGACGAGAGAG
ACTGGCAGGTAGAAGGAACGGAAGAAGGCGAGGACGACGACGACGCCGAG
GAGGAGGAGGACGACGCCGACGAGGAGAACGACGAAGAGGACGAGGAGGG
AGGATGGGATGAGCAATACTCAGCAGGAACACGACGCCTAACCGTGCTGT
CGAAGCCCATCAAGTCCGCGCTCTTTTCTGAGACCCCGAATGATGCCCGT
AGTAGTAACAATGGCAAGAATCACTCGGGCGGTGATACCGAGTCGGCGCC
CTCCTCGGAAGCGATGACGATGATGACGGACGGCGAGCAACAGGAAGAGC
AAAGGCAGCAGGGCGAGGTGACTGACAGTCAGGATGAGGCGAAACGGAGG
GCGGACGAGGTGACGGGCCTATCGAGTCCTAGAGGTTCGAGCACGTCGGC
AGTGTCTGCG
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