mRNA_H-paniculata_contig30888.8358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30888.8358.1
Unique NamemRNA_H-paniculata_contig30888.8358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30888.8358.1 vs. uniprot
Match: UPI00092F1DB2 (uncharacterized protein LOC109362714 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F1DB2)

HSP 1 Score: 64.7 bits (156), Expect = 2.470e-8
Identity = 70/298 (23.49%), Postives = 130/298 (43.62%), Query Frame = 1 
Query:    1 RIEEWEEKYETISMKRGEDPMKLFARTDEIVSVLESLGQTVTESSVNRKLVRALTSDYEMEQRTILYKETVTRSEIEHVVRQ------RYMQLPKSRSVGQALVAESQLGRGFGKGKWXXXXXXXKNSNSGENSSGGKQR-----------------KCRRCKLPGHFWYECKARVIPAQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGSKEYMRDIRPSN-DQVRIGDYQLIDVECVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLSL 822
            +++   ++YE + M+ G+   + F +   I + ++  G+ +T++ V RK++R+L   ++     I   + VT  +IE           R ++    + V QAL A  + G      KW       +   S E S    +R                 +C  C   GH+ YEC  +    Q++ ++ + T+ E      + L+ +  +     EF        W  DS  + HMT  KE+++D   +N  +V+  D   +  +  G + I+    NG   + + +V YVP++KYNLLS+
Sbjct:   24 KLQSLRKQYELLHMEEGDKVGEYFTKILTITNQMKGYGEAITDTMVIRKIMRSLLPRFDFIVVAIEESKDVTLMKIEEKQSSLEAHELRLIERNPMKKVEQALKAIHKDGDRRKDKKWKGKQSLNRRKTSQEWSESSDKRGRSKLNYNQKKFDKSKVECFNCHKLGHYSYEC-GKEKNKQSRHKEEALTTQEDSDSEPLNLMVTDAATKSHSEF--------WYLDSGCSNHMTNHKEWLKDFDSTNRSRVKFADDSSLSAKGAGNVVIM--RENGSKAI-VSNVLYVPKMKYNLLSI 309
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BLAST of mRNA_H-paniculata_contig30888.8358.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50)

HSP 1 Score: 64.3 bits (155), Expect = 4.150e-8
Identity = 47/158 (29.75%), Postives = 78/158 (49.37%), Query Frame = 1 
Query:  379 NSSGG--KQRKCRRCKLPGHFWYECKAR----VIPAQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGF-ETWRSDSAATFHMTGSKEYMRD-IRPSNDQVRIGDYQLIDVECVGTLTIVFPSVNGE--VTLRLEDVAYVPRLKYNLLSL 822
            N  GG  K + C  CK  GH W  C  R       A+    + + ++ E+ + +   L++SS          L  G  + W  DS A++HM+G KE+  + ++     +R+GD ++++    GT+ I     NGE  V + L +V ++P LKYNL S+
Sbjct:  219 NKKGGTKKDKTCTYCKKTGHLWKSCYKRKNDEADKAKQPKGEVADSTHEEGTFIHELLMASS----------LPKGLSDKWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINI--SVFNGESWVKMSLNNVLFIPELKYNLFSM 364
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BLAST of mRNA_H-paniculata_contig30888.8358.1 vs. uniprot
Match: UPI0010172210 (uncharacterized protein LOC114170345 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI0010172210)

HSP 1 Score: 58.9 bits (141), Expect = 1.380e-7
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:  586 GFETWRSDSAATFHMTGSKEYMRDIRPS-NDQVRIGDYQLIDVECVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLS 819
            G E W  D+  + HMTG KE++ +I  S ++++++ D  +I  E VG + I     +G+ T+ +EDV YVP +KYNLLS
Sbjct:   10 GRENWFLDTRCSNHMTGHKEWLSNIDTSRSNKIKLADDNMIRAEGVGNVVI---KKDGKETMVIEDVLYVPGIKYNLLS 85
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BLAST of mRNA_H-paniculata_contig30888.8358.1 vs. uniprot
Match: A0A6D2J390_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J390_9BRAS)

HSP 1 Score: 56.2 bits (134), Expect = 2.020e-5
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:  406 CRRCKLPGHFWYECKARVIP-----AQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGSKEYMRDIRPS-NDQVRIGDYQLIDVECVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLSL 822
            C RC   GH+  +C  R++      AQ    +  +   E++    V ++          E   + G   W  D+ A+ HMTG++ Y ++I  S   +VR GD   +D++  G+  I+F S NGE  + L DV ++P LK N+ SL
Sbjct:  224 CYRCDKYGHYASDCPDRLLKLKLQEAQENEDNNDTQEAEKLMMHEVVMLKERNVKQKDFEANSD-GDNVWYLDNGASNHMTGNRNYFKEIDESMTGKVRFGDDSRLDIKGKGS--ILFYSKNGEKKM-LADVYFIPELKSNITSL 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30888.8358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00092F1DB22.470e-823.49uncharacterized protein LOC109362714 n=1 Tax=Lupin... [more]
UPI001CDB8C504.150e-829.75uncharacterized protein LOC122853856 n=1 Tax=Aphid... [more]
UPI00101722101.380e-740.51uncharacterized protein LOC114170345 n=1 Tax=Vigna... [more]
A0A6D2J390_9BRAS2.020e-530.34CCHC-type domain-containing protein n=1 Tax=Microt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30888contigH-paniculata_contig30888:1120..1995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue1e-07
Seed eggNOG ortholog4432.XP_010277694.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37TJU@33090,3GHKT@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size822
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.9981456-CDS-H-paniculata_contig30888:1119..15411622929948.9981456-CDS-H-paniculata_contig30888:1119..1541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30888 1120..1541 -
1691481082.3478825-CDS-H-paniculata_contig30888:1119..15411691481082.3478825-CDS-H-paniculata_contig30888:1119..1541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30888 1120..1541 -
1622929949.0140703-CDS-H-paniculata_contig30888:1595..19951622929949.0140703-CDS-H-paniculata_contig30888:1595..1995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30888 1596..1995 -
1691481082.3572931-CDS-H-paniculata_contig30888:1595..19951691481082.3572931-CDS-H-paniculata_contig30888:1595..1995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30888 1596..1995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30888.8358.1prot_H-paniculata_contig30888.8358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30888 1120..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30888.8358.1

>prot_H-paniculata_contig30888.8358.1 ID=prot_H-paniculata_contig30888.8358.1|Name=mRNA_H-paniculata_contig30888.8358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp
RIEEWEEKYETISMKRGEDPMKLFARTDEIVSVLESLGQTVTESSVNRKL
VRALTSDYEMEQRTILYKETVTRSEIEHVVRQRYMQLPKSRSVGQALVAE
SQLGRGFGKGKWRGRGFGKKNSNSGENSSGGKQRKCRRCKLPGHFWYECK
ARVIPAQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETW
RSDSAATFHMTGSKEYMRDIRPSNDQVRIGDYQLIDVECVGTLTIVFPSV
NGEVTLRLEDVAYVPRLKYNLLSL
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mRNA from alignment at H-paniculata_contig30888:1120..1995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30888.8358.1 ID=mRNA_H-paniculata_contig30888.8358.1|Name=mRNA_H-paniculata_contig30888.8358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=876bp|location=Sequence derived from alignment at H-paniculata_contig30888:1120..1995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATAGAAGAGTGGGAAGAAAAGTACGAGACAATTTCGATGAAACGGGG
CGAAGATCCCATGAAATTGTTCGCCCGCACAGACGAGATCGTTTCTGTAC
TGGAGTCACTAGGACAGACTGTAACAGAGTCAAGCGTGAATCGGAAGTTA
GTTCGAGCTTTGACATCGGACTATGAGATGGAACAGCGCACAATTCTCTA
CAAAGAGACTGTAACAAGGTCAGAAATTGAGCACGTAGTAAGACAAAGGT
ACATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTCTTGTAGCCGAG
TCACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGCGGCAGAGGGTT
TGGGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGGTGGTAAGCAGA
GTAACCGGGCTGGTACAAAGAGTGAAACTTCATTGGTTCCGGAAGACATG
AGAGGGAAGTGTAGACGATGCAAGCTGCCGGGACATTTTTGGTACGAGTG
CAAGGCGCGTGTCATCCCTGCGCAGACTCAGGTGCAAGATGCATCAAGCA
CCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAGCAGTTCT
GGGAGTCACAATGATGGTGATGAATTTGGGCTAGAGACGGGTTTTGAGAC
GTGGAGAAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAAAGAGT
ATATGAGAGACATACGCCCGTCCAACGACCAGGTCCGAATAGGAGACTAT
CAACTCATTGATGTGGAGTGTGTAGGTACTTTAACTATTGTCTTTCCGAG
TGTGAACGGTGAAGTAACCCTGAGACTGGAAGACGTGGCGTATGTTCCAA
GGTTAAAGTACAATCTGCTGTCTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig30888:1120..1995-

>mRNA_H-paniculata_contig30888.8358.1 ID=mRNA_H-paniculata_contig30888.8358.1|Name=mRNA_H-paniculata_contig30888.8358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig30888:1120..1995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATAGAAGAGTGGGAAGAAAAGTACGAGACAATTTCGATGAAACGGGG
CGAAGATCCCATGAAATTGTTCGCCCGCACAGACGAGATCGTTTCTGTAC
TGGAGTCACTAGGACAGACTGTAACAGAGTCAAGCGTGAATCGGAAGTTA
GTTCGAGCTTTGACATCGGACTATGAGATGGAACAGCGCACAATTCTCTA
CAAAGAGACTGTAACAAGGTCAGAAATTGAGCACGTAGTAAGACAAAGGT
ACATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTCTTGTAGCCGAG
TCACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGCGGCAGAGGGTT
TGGGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGGTGGTAAGCAGA
CGGATAGAAGAGTGGGAAGAAAAGTACGAGACAATTTCGATGAAACGGGG
CGAAGATCCCATGAAATTGTTCGCCCGCACAGACGAGATCGTTTCTGTAC
TGGAGTCACTAGGACAGACTGTAACAGAGTCAAGCGTGAATCGGAAGTTA
GTTCGAGCTTTGACATCGGACTATGAGATGGAACAGCGCACAATTCTCTA
CAAAGAGACTGTAACAAGGTCAGAAATTGAGCACGTAGTAAGACAAAGGT
ACATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTCTTGTAGCCGAG
TCACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGCGGCAGAGGGTT
TGGGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGGTGGTAAGCAGA
GGAAGTGTAGACGATGCAAGCTGCCGGGACATTTTTGGTACGAGTGCAAG
GCGCGTGTCATCCCTGCGCAGACTCAGGTGCAAGATGCATCAAGCACCAG
CGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAGCAGTTCTGGGA
GTCACAATGATGGTGATGAATTTGGGCTAGAGACGGGTTTTGAGACGTGG
AGAAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAAAGAGTATAT
GAGAGACATACGCCCGTCCAACGACCAGGTCCGAATAGGAGACTATCAAC
TCATTGATGTGGAGTGTGTAGGTACTTTAACTATTGTCTTTCCGAGTGTG
AACGGTGAAGTAACCCTGAGACTGGAAGACGTGGCGTATGTTCCAAGGTT
AAAGTACAATCTGCTGTCTCTGGGAAGTGTAGACGATGCAAGCTGCCGGG
ACATTTTTGGTACGAGTGCAAGGCGCGTGTCATCCCTGCGCAGACTCAGG
TGCAAGATGCATCAAGCACCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTT
GCGTTGATTAGCAGTTCTGGGAGTCACAATGATGGTGATGAATTTGGGCT
AGAGACGGGTTTTGAGACGTGGAGAAGTGATAGTGCAGCTACGTTTCACA
TGACCGGTTCAAAAGAGTATATGAGAGACATACGCCCGTCCAACGACCAG
GTCCGAATAGGAGACTATCAACTCATTGATGTGGAGTGTGTAGGTACTTT
AACTATTGTCTTTCCGAGTGTGAACGGTGAAGTAACCCTGAGACTGGAAG
ACGTGGCGTATGTTCCAAGGTTAAAGTACAATCTGCTGTCTCTG
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