mRNA_H-paniculata_contig30887.8357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30887.8357.1
Unique NamemRNA_H-paniculata_contig30887.8357.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30887.8357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30887contigH-paniculata_contig30887:768..1251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size484
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30887.8357.1prot_H-paniculata_contig30887.8357.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30887 854..1189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.9145818-UTR-H-paniculata_contig30887:767..8531622929948.9145818-UTR-H-paniculata_contig30887:767..853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30887 768..853 +
1691481082.3138742-UTR-H-paniculata_contig30887:767..8531691481082.3138742-UTR-H-paniculata_contig30887:767..853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30887 768..853 +
1622929948.9530072-UTR-H-paniculata_contig30887:1189..12511622929948.9530072-UTR-H-paniculata_contig30887:1189..1251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30887 1190..1251 +
1691481082.3343508-UTR-H-paniculata_contig30887:1189..12511691481082.3343508-UTR-H-paniculata_contig30887:1189..1251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30887 1190..1251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.933909-CDS-H-paniculata_contig30887:853..11891622929948.933909-CDS-H-paniculata_contig30887:853..1189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30887 854..1189 +
1691481082.3246205-CDS-H-paniculata_contig30887:853..11891691481082.3246205-CDS-H-paniculata_contig30887:853..1189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30887 854..1189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30887.8357.1

>prot_H-paniculata_contig30887.8357.1 ID=prot_H-paniculata_contig30887.8357.1|Name=mRNA_H-paniculata_contig30887.8357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MITRWASAVLTERNKKILHVQVRLFGHRVDPVQCRRSTGKQVTTTPEYQH
GLHPDGADAPEMVMNTKIVRVPIPTSYRVLWPETIVGTGGVSTLELSIRF
STPLRRLLSMK*
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mRNA from alignment at H-paniculata_contig30887:768..1251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30887.8357.1 ID=mRNA_H-paniculata_contig30887.8357.1|Name=mRNA_H-paniculata_contig30887.8357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=484bp|location=Sequence derived from alignment at H-paniculata_contig30887:768..1251+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTATGATAACGTGACCCCTGTAATGACCTTCGCTGTGAAAGCTGCATG
TGTGTTGACATTCTTAGGTGCTAGCTCCAGGTCGAGATGATCACTCGTTG
GGCAAGTGCTGTTCTTACGGAGAGGAACAAAAAGATCCTTCATGTCCAAG
TACGATTGTTTGGACATCGTGTTGACCCCGTTCAGTGCCGCCGTTCAACT
GGAAAACAGGTGACGACCACGCCCGAGTACCAGCATGGCTTGCATCCGGA
CGGAGCGGACGCCCCCGAGATGGTCATGAACACAAAAATAGTCAGGGTGC
CAATACCAACGTCATACAGGGTGTTGTGGCCGGAGACGATAGTGGGGACT
GGAGGAGTCAGCACATTAGAGTTGTCCATTCGATTCTCGACACCGTTGAG
ACGCTTATTATCAATGAAGTGAGATGAGGCGCCGCAGTCGGATGTCATGC
AGAATTTGACGGGTAACTCATTATCGACGGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig30887:768..1251+

>mRNA_H-paniculata_contig30887.8357.1 ID=mRNA_H-paniculata_contig30887.8357.1|Name=mRNA_H-paniculata_contig30887.8357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig30887:768..1251+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCACTCGTTGGGCAAGTGCTGTTCTTACGGAGAGGAACAAAAAGAT
CCTTCATGTCCAAGTACGATTGTTTGGACATCGTGTTGACCCCGTTCAGT
GCCGCCGTTCAACTGGAAAACAGGTGACGACCACGCCCGAGTACCAGCAT
GGCTTGCATCCGGACGGAGCGGACGCCCCCGAGATGGTCATGAACACAAA
AATAGTCAGGGTGCCAATACCAACGTCATACAGGGTGTTGTGGCCGGAGA
CGATAGTGGGGACTGGAGGAGTCAGCACATTAGAGTTGTCCATTCGATTC
TCGACACCGTTGAGACGCTTATTATCAATGAAGTGAATGATCACTCGTTG
GGCAAGTGCTGTTCTTACGGAGAGGAACAAAAAGATCCTTCATGTCCAAG
TACGATTGTTTGGACATCGTGTTGACCCCGTTCAGTGCCGCCGTTCAACT
GGAAAACAGGTGACGACCACGCCCGAGTACCAGCATGGCTTGCATCCGGA
CGGAGCGGACGCCCCCGAGATGGTCATGAACACAAAAATAGTCAGGGTGC
CAATACCAACGTCATACAGGGTGTTGTGGCCGGAGACGATAGTGGGGACT
GGAGGAGTCAGCACATTAGAGTTGTCCATTCGATTCTCGACACCGTTGAG
ACGCTTATTATCAATGAAGTGA
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