mRNA_H-paniculata_contig30885.8356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30885.8356.1
Unique NamemRNA_H-paniculata_contig30885.8356.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30885.8356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30885contigH-paniculata_contig30885:29..1640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30885.8356.1prot_H-paniculata_contig30885.8356.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30885 29..1627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.8222282-CDS-H-paniculata_contig30885:28..2061622929948.8222282-CDS-H-paniculata_contig30885:28..206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30885 29..206 -
1691481082.2759802-CDS-H-paniculata_contig30885:28..2061691481082.2759802-CDS-H-paniculata_contig30885:28..206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30885 29..206 -
1622929948.8375633-CDS-H-paniculata_contig30885:624..7221622929948.8375633-CDS-H-paniculata_contig30885:624..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30885 625..722 -
1691481082.285178-CDS-H-paniculata_contig30885:624..7221691481082.285178-CDS-H-paniculata_contig30885:624..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30885 625..722 -
1622929948.855481-CDS-H-paniculata_contig30885:1540..16271622929948.855481-CDS-H-paniculata_contig30885:1540..1627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30885 1541..1627 -
1691481082.2944427-CDS-H-paniculata_contig30885:1540..16271691481082.2944427-CDS-H-paniculata_contig30885:1540..1627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30885 1541..1627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.8712044-UTR-H-paniculata_contig30885:1627..16401622929948.8712044-UTR-H-paniculata_contig30885:1627..1640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30885 1628..1640 -
1691481082.303861-UTR-H-paniculata_contig30885:1627..16401691481082.303861-UTR-H-paniculata_contig30885:1627..1640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30885 1628..1640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30885.8356.1

>prot_H-paniculata_contig30885.8356.1 ID=prot_H-paniculata_contig30885.8356.1|Name=mRNA_H-paniculata_contig30885.8356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MTRLGVGAYGEVWLTSMEDLKFALKILNVSEVANDEDGNSERAIRRSIAR
ESMAREMVVFTRMSFHPNIIQAHALDDGIARKQILLEIADCDLLDLLNTV
LTQDDDEASYGGRSGQGSQAN
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mRNA from alignment at H-paniculata_contig30885:29..1640-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30885.8356.1 ID=mRNA_H-paniculata_contig30885.8356.1|Name=mRNA_H-paniculata_contig30885.8356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1612bp|location=Sequence derived from alignment at H-paniculata_contig30885:29..1640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGAGAAGAAGATGACACGCTTGGGGGTCGGAGCATATGGGGAAGTGT
GGTTGACGAGCATGGAAGATTTGAAATTCGCGCTGAAGATCCTGAATGTG
GTGAGATGTGGTAGTCACAGCGCGGTGCTGATTGATTGAATACAATACAG
TGTTATTAAGGCCTCTTCGCGATCGGAAACCGATCGATGGTTCGAAAAGT
AGAACATGACCTTTCTGTAATGTAAGTATGAAGACTCTTTCACGTGAGCG
GTTAGTCAGGTCAGTGTTGGGATACTGTTATTGTTATTGTTATTGCAAGG
GAAGAGAAGGATGAGGACAGTGGTTCGTAGAGAAGTACGCGTTGGCAATA
ATTAATTCAGTCAGCACTGATTGTATGACCACCAACTTCAAACAGACCGC
TTTCTCTACACCTGCGAGAAACGGATGCCCCTAACCGATAATGTTTCGAT
GCCGTCGGTTAGCCAACCCCGAGTAAAGAACCACAACCGTATGTGCAAGT
CAATCGGGGCGCGAGGGGGCATGTAGGGCTATGTACTCGCTATTCACGGG
GAAGTTAATTCGACCTTTGGTAGTAACTCACGACTGCACAGTTATTCCGC
CCGCGTTGCCAACATCTTGCATACCAAGGCGCTCGATTTTGAGACCCGAT
CAGCTTTATTCTAGCCGGAACACGACGGCGAATACCCACATAAAACACCG
TCAGCCATGAACACAGCACCCCTGCTCTTTACCAGTGGTATAGTCATGCA
GCATACGTTGAGCATGATATTGCTAGGTTGCATGTCTTGGCAGTTGCATG
GGAATTCAACCCTGGCCTTGGTCTCGACCCAAAACAAATGATTTAAATAG
CCCATCAGGTGAGGAATCTCTAATTGCTGAACTGTACTCTTATTCTTCGC
CGGTCCGATGTTACTCAGAGCGAAGTCGCCAACGATGAGGACGGGAATTC
GGAGAGAGCGATTCGGAGGAGCATCGCCCGAGAATCCATGGCCCGGGAGA
TGGTTGTCTTTACACGGTGAGCTAGCTGCTGTAACGTAAAACACACGACA
ACCAGGTTTGACGTAGTGTTGATAGATCAAGACTTACTATTGTATTGAGA
GCTCGTCCGCTACTGCAGTCTGCAGTCTGACGAATAGAATATTCTATCGC
TCAGGGACGAGGTGTGTTGTGTTGACTACTGTACCTTGAATAGTGTTTGA
TGCTGTTGACTCCATGTGTTTTGTGTTGGCGTTGAGCGCGGCTTGCGCGT
GTATCGTCGGCGGTAAGCGGATGGCAGTGTCGTGCTCCAGAATAATAGAT
ATTATCCGACGTTTCTGTAACCCCATTTCTCCCACGAGCAAATACGGGCA
TCTCGGCATGTTACACGGTAGAGTTTAGAGACTGATCTGAATATCACAAT
GTTATGTGCGTTTACTTTTTCACCATCCCGACAGCATGAGCTTCCATCCG
AACATCATCCAAGCGCATGCCCTGGACGACGGGATTGCTCGTAAGCAAAT
CTTATTGGAGATTGCCGATTGCGATCTTTTGGACTTACTCAACACGGTCT
TGACCCAAGACGACGACGAAGCTTCCTACGGAGGGCGAAGCGGGCAGGGA
AGCCAAGCTAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig30885:29..1640-

>mRNA_H-paniculata_contig30885.8356.1 ID=mRNA_H-paniculata_contig30885.8356.1|Name=mRNA_H-paniculata_contig30885.8356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig30885:29..1640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACGCTTGGGGGTCGGAGCATATGGGGAAGTGTGGTTGACGAGCAT
GGAAGATTTGAAATTCGCGCTGAAGATCCTGAATGTGATGACACGCTTGG
GGGTCGGAGCATATGGGGAAGTGTGGTTGACGAGCATGGAAGATTTGAAA
TTCGCGCTGAAGATCCTGAATGTGAGCGAAGTCGCCAACGATGAGGACGG
GAATTCGGAGAGAGCGATTCGGAGGAGCATCGCCCGAGAATCCATGGCCC
GGGAGATGGTTGTCTTTACACGAGCGAAGTCGCCAACGATGAGGACGGGA
ATTCGGAGAGAGCGATTCGGAGGAGCATCGCCCGAGAATCCATGGCCCGG
GAGATGGTTGTCTTTACACGCATGAGCTTCCATCCGAACATCATCCAAGC
GCATGCCCTGGACGACGGGATTGCTCGTAAGCAAATCTTATTGGAGATTG
CCGATTGCGATCTTTTGGACTTACTCAACACGGTCTTGACCCAAGACGAC
GACGAAGCTTCCTACGGAGGGCGAAGCGGGCAGGGAAGCCAAGCTAACCA
TGAGCTTCCATCCGAACATCATCCAAGCGCATGCCCTGGACGACGGGATT
GCTCGTAAGCAAATCTTATTGGAGATTGCCGATTGCGATCTTTTGGACTT
ACTCAACACGGTCTTGACCCAAGACGACGACGAAGCTTCCTACGGAGGGC
GAAGCGGGCAGGGAAGCCAAGCTAAC
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