mRNA_H-paniculata_contig3087.8353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3087.8353.1
Unique NamemRNA_H-paniculata_contig3087.8353.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: D7G395_ECTSI (Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G395_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.960e-24
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 2
Query:    2 SAEERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALLL 235
            S EERR+LLLFITGTDRLPEA CE LSIEI F +PG     E+    R  A K LG +PTAHTCDN+LELPNYW LL+
Sbjct: 2366 SPEERRRLLLFITGTDRLPEAGCETLSIEIPFEVPGGSKDIETA---RLAATKSLGQVPTAHTCDNILELPNYWMLLM 2440          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A7S2G9P9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G9P9_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 3.950e-14
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2
Query:    2 SAEERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALL 232
            S  ++RKL+ F+TG+ RLP    E L +++LF   G  T+  +           LGT+P AHTCDN+LE+PNYWA L
Sbjct:    1 STADKRKLVKFVTGSGRLPPPGTEVLRVQVLFEEEGEATTAAA-----------LGTLPQAHTCDNLLEVPNYWAAL 66          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A835ZDJ6_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.290e-13
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 2
Query:    8 EERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALLL 235
            +E+  LLLFITG  RLP    E ++IE+ +  P AR     + S    A+  LG +P AHTCDN+LE+P+YW  L+
Sbjct:   64 QEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALV 139          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A7S4BF61_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BF61_CHRCT)

HSP 1 Score: 67.8 bits (164), Expect = 1.890e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 2
Query:    2 SAEERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALL 232
            S +++R +L F+TG++R P A  E +SI++ F L  A T+          A   LGT+P AHTCDNMLELPNY A L
Sbjct:  608 STKDKRMVLQFVTGSERRPAAWTEAISIQMPFELDAADTT---------SATHMLGTLPQAHTCDNMLELPNYLAAL 675          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A7S3ZUA9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.920e-11
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 2
Query:   11 ERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALLL 235
            +RRKLL+F+TG  RLP    E L++E+ F        P   D    E R+ L  +P +HTCDN+LELPNYW  LL
Sbjct: 1535 QRRKLLVFVTGVSRLPARHAEFLTVELPF-------LPFGVD----EQRRMLAMVPQSHTCDNILELPNYWEALL 1598          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A250X7M0_9CHLO (HECT domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7M0_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 8.950e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 2
Query:    2 SAEERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALLL 235
            S E++++ L+F+TG+ RLP    E L +E  F   GA            E +  LG +P AHTCDN+LE+PNYW  LL
Sbjct:  690 SLEKKKQFLVFVTGSSRLPLPGSELLKVEAPFVALGAA-----------EHKAHLGMVPQAHTCDNLLEVPNYWEALL 756          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A7S1XCL5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XCL5_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-10
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 2
Query:    8 EERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALLL 235
            E +RK +LF TG+DRLP    E L +E+ F    A            + +K LG +P AHTC+N+LELPNYW  +L
Sbjct:  111 ELKRKFVLFCTGSDRLPLPGTELLRVELPFVAFSA-----------SDQKKMLGMLPQAHTCENVLELPNYWEAVL 175          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A7R9TSF4_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TSF4_9VIRI)

HSP 1 Score: 65.1 bits (157), Expect = 1.570e-10
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:    2 SAEERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWA 226
            SA  +RK L+F+TG+DRLP    E L +E+ F   GA            + R+++G +P AHTC+N+LELP+Y+A
Sbjct:  326 SAPMKRKFLVFVTGSDRLPAPGAELLKVEMPFVALGAA-----------DLREQMGMLPQAHTCENILELPDYYA 389          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A7R9TTY4_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TTY4_9VIRI)

HSP 1 Score: 65.1 bits (157), Expect = 1.650e-10
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:    2 SAEERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWA 226
            SA  +RK L+F+TG+DRLP    E L +E+ F   GA            + R+++G +P AHTC+N+LELP+Y+A
Sbjct:  519 SAPMKRKFLVFVTGSDRLPAPGAELLKVEMPFVALGAA-----------DLREQMGMLPQAHTCENILELPDYYA 582          
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Match: A0A024U1P8_9STRA (HECT-type E3 ubiquitin transferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1P8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.690e-10
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 2
Query:    2 SAEERRKLLLFITGTDRLPEASCEDLSIEILFGLPGARTSPESTDSTRKEARKELGTIPTAHTCDNMLELPNYWALL 232
            ++ ++RK + F+TG D+LP    E L IE+ F   G             E +K+L  +P +HTCDN+LELPNYWA L
Sbjct: 1065 ASTDQRKFVKFVTGIDKLPSPGTEFLRIEVPFTAIG-----------NSERQKQLLLLPQSHTCDNILELPNYWAAL 1130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3087.8353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G395_ECTSI1.960e-2466.67Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S2G9P9_9EUKA3.950e-1444.16Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A835ZDJ6_9STRA2.290e-1344.74HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S4BF61_CHRCT1.890e-1146.75Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3ZUA9_9STRA1.920e-1146.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A250X7M0_9CHLO8.950e-1142.31HECT domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A7S1XCL5_9CHLO1.390e-1043.42Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7R9TSF4_9VIRI1.570e-1042.67Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7R9TTY4_9VIRI1.650e-1042.67Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A024U1P8_9STRA1.690e-1041.56HECT-type E3 ubiquitin transferase n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3087contigH-paniculata_contig3087:5478..6180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.374369-CDS-H-paniculata_contig3087:5477..55651622929948.374369-CDS-H-paniculata_contig3087:5477..5565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 5478..5565 +
1691481082.1057467-CDS-H-paniculata_contig3087:5477..55651691481082.1057467-CDS-H-paniculata_contig3087:5477..5565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 5478..5565 +
1622929948.3894784-CDS-H-paniculata_contig3087:6031..61801622929948.3894784-CDS-H-paniculata_contig3087:6031..6180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 6032..6180 +
1691481082.1155932-CDS-H-paniculata_contig3087:6031..61801691481082.1155932-CDS-H-paniculata_contig3087:6031..6180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 6032..6180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3087.8353.1prot_H-paniculata_contig3087.8353.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3087 5478..6180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3087.8353.1

>prot_H-paniculata_contig3087.8353.1 ID=prot_H-paniculata_contig3087.8353.1|Name=mRNA_H-paniculata_contig3087.8353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
LCGRAPKVVIVHHRYGSTTGGELRGSVDRDSIWIARRKNLPRKYGLDSQG
SAKGARNDSHSTHVRQHVRAAELLGIAT*
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mRNA from alignment at H-paniculata_contig3087:5478..6180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3087.8353.1 ID=mRNA_H-paniculata_contig3087.8353.1|Name=mRNA_H-paniculata_contig3087.8353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at H-paniculata_contig3087:5478..6180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGCGGAAGAGCGCCGAAAGTTGTTATTGTTCATCACCGGTACGGATC GACTACCGGAGGCGAGCTGCGAGGATCTGTCGATCGAGGTGAGCGTGTTT ATCGCTATCGCACCTAGTCATCCTTCAAACCGTGAAATATGTGTTGCTAT ATTGCTGTCGTCATTGTTATTCCATTTGCAATCCGACAATGTACAGACTC GGATGCAGCGTTCAAAAGCAGGAAAGATCACACTAAACGCGTAAATTGAA AATGAGTCACTACGGCATAGATCACGCTGGTGTCCTATGTGCATGGATAG TCCGAAATCCAAGATCTCAGATCCCAAACTATTCTGAATAAAGCGCTATG TAACACAACACCCTTCACTTCCAGGTGCTGCCTTACTGCCCCCCCCCCCC TCCCCGTTGCAGAATTCGGGATATATAGTTGATCAGCTCTGGTGCGCCCC TGTCGCCGATTATTTCCGCTGTTCCTCCCCCCGCTCCCCGCTCCCCGCCT GCTGCATCCCATCCACTTAATTACGGCGGCATACACGAAATTGCGGTGGG GTAGATTCTATTTGGATTGCCCGGCGCAAGAACCTCCCCCGAAAGTACGG ACTCGACTCGCAAGGAAGCGCGAAAGGAGCTCGGAACGATTCCCACAGCA CACACGTGCGACAACATGTTAGAGCTGCCGAATTACTGGGCATTGCTACT TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3087:5478..6180+

>mRNA_H-paniculata_contig3087.8353.1 ID=mRNA_H-paniculata_contig3087.8353.1|Name=mRNA_H-paniculata_contig3087.8353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig3087:5478..6180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGCGGAAGAGCGCCGAAAGTTGTTATTGTTCATCACCGGTACGGATC
GACTACCGGAGGCGAGCTGCGAGGATCTGTCGATCGAGCTCTGCGGAAGA
GCGCCGAAAGTTGTTATTGTTCATCACCGGTACGGATCGACTACCGGAGG
CGAGCTGCGAGGATCTGTCGATCGAGATTCTATTTGGATTGCCCGGCGCA
AGAACCTCCCCCGAAAGTACGGACTCGACTCGCAAGGAAGCGCGAAAGGA
GCTCGGAACGATTCCCACAGCACACACGTGCGACAACATGTTAGAGCTGC
CGAATTACTGGGCATTGCTACTTAGATTCTATTTGGATTGCCCGGCGCAA
GAACCTCCCCCGAAAGTACGGACTCGACTCGCAAGGAAGCGCGAAAGGAG
CTCGGAACGATTCCCACAGCACACACGTGCGACAACATGTTAGAGCTGCC
GAATTACTGGGCATTGCTACTTAG
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