mRNA_H-paniculata_contig30863.8351.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30863.8351.1
Unique NamemRNA_H-paniculata_contig30863.8351.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30863.8351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30863contigH-paniculata_contig30863:43..711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size669
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30863.8351.1prot_H-paniculata_contig30863.8351.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30863 44..400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.2871618-UTR-H-paniculata_contig30863:42..431622929948.2871618-UTR-H-paniculata_contig30863:42..43Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30863 43..43 +
1691481082.072555-UTR-H-paniculata_contig30863:42..431691481082.072555-UTR-H-paniculata_contig30863:42..43Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30863 43..43 +
1622929948.3214386-UTR-H-paniculata_contig30863:400..7111622929948.3214386-UTR-H-paniculata_contig30863:400..711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30863 401..711 +
1691481082.0945857-UTR-H-paniculata_contig30863:400..7111691481082.0945857-UTR-H-paniculata_contig30863:400..711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30863 401..711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.307209-CDS-H-paniculata_contig30863:43..4001622929948.307209-CDS-H-paniculata_contig30863:43..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30863 44..400 +
1691481082.0820057-CDS-H-paniculata_contig30863:43..4001691481082.0820057-CDS-H-paniculata_contig30863:43..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30863 44..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30863.8351.1

>prot_H-paniculata_contig30863.8351.1 ID=prot_H-paniculata_contig30863.8351.1|Name=mRNA_H-paniculata_contig30863.8351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MERLRRLLVRAPADRAWRRRGLLVMCRAFLDKDGFGSISNQPLSDEVDEA
ASEDGTNKHGKTEGSVGSKADSDVDTTSKATASIETTGAEASCRLRGVEA
WVINLEQDELFRLIISFL*
back to top

mRNA from alignment at H-paniculata_contig30863:43..711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30863.8351.1 ID=mRNA_H-paniculata_contig30863.8351.1|Name=mRNA_H-paniculata_contig30863.8351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=669bp|location=Sequence derived from alignment at H-paniculata_contig30863:43..711+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGGAGCGCTTGCGCAGGCTGTTAGTGCGCGCTCCGGCGGATAGGGCAT
GGCGTCGACGGGGCTTACTGGTCATGTGTCGCGCTTTTCTGGACAAGGAT
GGGTTCGGCTCTATCAGCAATCAACCACTGAGTGACGAAGTTGATGAGGC
CGCTAGCGAAGATGGCACTAATAAACATGGTAAGACAGAGGGGTCTGTCG
GCTCAAAGGCGGATAGTGATGTTGACACGACAAGCAAGGCTACGGCGAGC
ATCGAGACTACTGGAGCCGAGGCTTCTTGTAGGCTGCGTGGTGTGGAAGC
TTGGGTGATAAACCTGGAGCAGGACGAGCTTTTCCGTCTCATCATAAGCT
TTTTGTAGATGGTGAGCTCGTGCTCGGTATGTTTTTCTTCAAAGCGTTCT
GTTTGTGTCAGCAACGCGTATAATATATTAGTGGGTTCCTTTCGAAGTGC
CCAAAAGTTTCCCTTATACTACAGTGGGTCAAGTGCGGTACCGCACTGAA
ATGGAGAAATCGTTGTAACCTCGACCCTTTACCCAGAACACACCAGCGTC
AAACAAAAGTATTATTGAGGCGGTGGGGACATTTCAATTGCGTCAGTGCT
GGTGTCATGCTAATAAGAGATGTCTCACGCTTGCTTTTGTGAGGAGCCTT
GATTCTTTCTATCCTGTCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30863:43..711+

>mRNA_H-paniculata_contig30863.8351.1 ID=mRNA_H-paniculata_contig30863.8351.1|Name=mRNA_H-paniculata_contig30863.8351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig30863:43..711+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGCTTGCGCAGGCTGTTAGTGCGCGCTCCGGCGGATAGGGCATG
GCGTCGACGGGGCTTACTGGTCATGTGTCGCGCTTTTCTGGACAAGGATG
GGTTCGGCTCTATCAGCAATCAACCACTGAGTGACGAAGTTGATGAGGCC
GCTAGCGAAGATGGCACTAATAAACATGGTAAGACAGAGGGGTCTGTCGG
CTCAAAGGCGGATAGTGATGTTGACACGACAAGCAAGGCTACGGCGAGCA
TCGAGACTACTGGAGCCGAGGCTTCTTGTAGGCTGCGTGGTGTGGAAGCT
TGGGTGATAAACCTGGAGCAGGACGAGCTTTTCCGTCTCATCATAAGCTT
TTTGTAGATGGAGCGCTTGCGCAGGCTGTTAGTGCGCGCTCCGGCGGATA
GGGCATGGCGTCGACGGGGCTTACTGGTCATGTGTCGCGCTTTTCTGGAC
AAGGATGGGTTCGGCTCTATCAGCAATCAACCACTGAGTGACGAAGTTGA
TGAGGCCGCTAGCGAAGATGGCACTAATAAACATGGTAAGACAGAGGGGT
CTGTCGGCTCAAAGGCGGATAGTGATGTTGACACGACAAGCAAGGCTACG
GCGAGCATCGAGACTACTGGAGCCGAGGCTTCTTGTAGGCTGCGTGGTGT
GGAAGCTTGGGTGATAAACCTGGAGCAGGACGAGCTTTTCCGTCTCATCA
TAAGCTTTTTGTAG
back to top