mRNA_H-paniculata_contig308.8342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig308.8342.1
Unique NamemRNA_H-paniculata_contig308.8342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig308.8342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig308contigH-paniculata_contig308:4923..5342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.8953528-UTR-H-paniculata_contig308:4922..49401622929946.8953528-UTR-H-paniculata_contig308:4922..4940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig308 4923..4940 +
1691481081.3850672-UTR-H-paniculata_contig308:4922..49401691481081.3850672-UTR-H-paniculata_contig308:4922..4940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig308 4923..4940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.907332-CDS-H-paniculata_contig308:4940..53421622929946.907332-CDS-H-paniculata_contig308:4940..5342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig308 4941..5342 +
1691481081.4063108-CDS-H-paniculata_contig308:4940..53421691481081.4063108-CDS-H-paniculata_contig308:4940..5342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig308 4941..5342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig308.8342.1prot_H-paniculata_contig308.8342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig308 4941..5342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig308.8342.1

>prot_H-paniculata_contig308.8342.1 ID=prot_H-paniculata_contig308.8342.1|Name=mRNA_H-paniculata_contig308.8342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MRTRSRIKPARSDGVPNKRHCPIEGGMMMEVYIQCLGGEGYSAYPSGVTK
TPQESSSPDGGWAVWRSCVDIDTMGLTHTSRICFLGSSFRPFFQCKIDDL
WWKKNITVTIQGKERSLILCEKSLDQFVGIWSPA
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mRNA from alignment at H-paniculata_contig308:4923..5342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig308.8342.1 ID=mRNA_H-paniculata_contig308.8342.1|Name=mRNA_H-paniculata_contig308.8342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig308:4923..5342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAAACCAACCCTTGCATGCGGACACGCAGTCGCATCAAACCGGCGCG
GAGTGATGGTGTACCAAATAAACGCCATTGTCCAATTGAAGGAGGGATGA
TGATGGAAGTGTACATCCAATGTTTAGGGGGGGAGGGATATTCCGCGTAT
CCATCGGGAGTAACAAAAACTCCCCAAGAATCATCATCCCCCGATGGGGG
GTGGGCGGTATGGCGAAGCTGTGTTGACATCGACACTATGGGGCTCACGC
ATACGTCGAGAATATGTTTTCTGGGATCTTCTTTTCGGCCATTCTTCCAA
TGCAAGATAGATGATTTATGGTGGAAAAAAAACATAACGGTGACAATACA
GGGGAAGGAGAGATCTCTCATCCTGTGTGAGAAGAGCCTTGATCAATTTG
TCGGCATTTGGTCCCCGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig308:4923..5342+

>mRNA_H-paniculata_contig308.8342.1 ID=mRNA_H-paniculata_contig308.8342.1|Name=mRNA_H-paniculata_contig308.8342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig308:4923..5342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGACACGCAGTCGCATCAAACCGGCGCGGAGTGATGGTGTACCAAA
TAAACGCCATTGTCCAATTGAAGGAGGGATGATGATGGAAGTGTACATCC
AATGTTTAGGGGGGGAGGGATATTCCGCGTATCCATCGGGAGTAACAAAA
ACTCCCCAAGAATCATCATCCCCCGATGGGGGGTGGGCGGTATGGCGAAG
CTGTGTTGACATCGACACTATGGGGCTCACGCATACGTCGAGAATATGTT
TTCTGGGATCTTCTTTTCGGCCATTCTTCCAATGCAAGATAGATGATTTA
TGGTGGAAAAAAAACATAACGGTGACAATACAGGGGAAGGAGAGATCTCT
CATCCTGTGTGAGAAGAGCCTTGATCAATTTGTCGGCATTTGGTCCCCGG
CCATGCGGACACGCAGTCGCATCAAACCGGCGCGGAGTGATGGTGTACCA
AATAAACGCCATTGTCCAATTGAAGGAGGGATGATGATGGAAGTGTACAT
CCAATGTTTAGGGGGGGAGGGATATTCCGCGTATCCATCGGGAGTAACAA
AAACTCCCCAAGAATCATCATCCCCCGATGGGGGGTGGGCGGTATGGCGA
AGCTGTGTTGACATCGACACTATGGGGCTCACGCATACGTCGAGAATATG
TTTTCTGGGATCTTCTTTTCGGCCATTCTTCCAATGCAAGATAGATGATT
TATGGTGGAAAAAAAACATAACGGTGACAATACAGGGGAAGGAGAGATCT
CTCATCCTGTGTGAGAAGAGCCTTGATCAATTTGTCGGCATTTGGTCCCC
GGCC
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