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Homology
BLAST of mRNA_H-paniculata_contig3079.8340.1 vs. uniprot
Match: A0A6H5KRQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ1_9PHAE) HSP 1 Score: 122 bits (307), Expect = 5.060e-26 Identity = 147/416 (35.34%), Postives = 192/416 (46.15%), Query Frame = 1
Query: 124 ALSHAGDCEYIASILSSLRRELRSHLQSAAGAAFAATLEGKFSGTFRRLASSXXXXXXXXXXXDALSAYVNALGAYLETEEACVRRLRERASSDESKLSAVADEMNQYEGLGMPSLAVGLRAEMEKISVNIREDRMAEHTMVEQARCEAIKLAESLSFNAAAASSSRASKGFRYEAPPVG-----RTSPFASGGGSG-AGSDRLR----GAXXXSENAVNDXXXXXXXXXXXXXXXXGAGVMELGMVEDRKLRRVWELFSFLGIGNKGEDIPIVVNVGASYGSNGDXXXXXXXXGVFVSEFSVATTAT---TAAVAAATSAAAPSXXXXXXXXXXXXTASDNATMAARESDPYSAPAGSVVEVAAGGPERTRGDEVTAPAKARKVPPSRIRGGVRLPSPSRDGGRSLGGHLNWLNN 1332
A+S+A +C+ I S+ S+LRR L S L SA L G F G S+ AL AY ++L AY ETE CVRRLRERA +DE++++AV E+ +YEGL MP+L GLRA M+++ + EDR AEH ++ QAR + L +LS A S+R + A G A+G GSG AG D R A + GAG +E G L RV ELF+ L + GE+ P+ V XXXXXXXX T AA +A P+ T A + + P+ AG + + GP R +G+ + R PSRIRGGVRLPSPSR GG SL G LNWL+N
Sbjct: 667 AVSYARECQNIPSVYSNLRRYLDSQLASA--------LNGVFPGGGGEAKSA-----------SALGAYTDSLQAYFETEAECVRRLRERARADEAEVAAVEKELVEYEGLDMPTLTTGLRARMQQLRNEVAEDREAEHAIMSQARHQFTVLESTLS----AYDSTRTTGCLVSAAEGCGGGGDXXXXXVAAGIGSGTAGLDYPRPPDVSAATVKKIPGTSAAASAAGGVSGANGRVGAGSLE-GSAAAAGLARVRELFALLEVVGSGEEEPLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGEAAGGAALPPAG-----------TRDSRAQSSGVAATPFGQ-AGELEDHQ--GPNRRQGNSHGNGGRPRNPAPSRIRGGVRLPSPSRGGGNSLQGRLNWLDN 1044
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1401 |
| Cds size | 1401 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3079.8340.1 >prot_H-paniculata_contig3079.8340.1 ID=prot_H-paniculata_contig3079.8340.1|Name=mRNA_H-paniculata_contig3079.8340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=467bp
DSKIEAEQQRREQMLEQAKVTRAKYDAQRAAELDNLDRWENALSHAGDCE
YIASILSSLRRELRSHLQSAAGAAFAATLEGKFSGTFRRLASSSETTAAG
GGGGDALSAYVNALGAYLETEEACVRRLRERASSDESKLSAVADEMNQYE
GLGMPSLAVGLRAEMEKISVNIREDRMAEHTMVEQARCEAIKLAESLSFN
AAAASSSRASKGFRYEAPPVGRTSPFASGGGSGAGSDRLRGAGGGSENAV
NDGSGGGGVNGDVSGPNGGAGVMELGMVEDRKLRRVWELFSFLGIGNKGE
DIPIVVNVGASYGSNGDGGGGGGGRGVFVSEFSVATTATTAAVAAATSAA
APSAAAPTTAAPAAATASDNATMAARESDPYSAPAGSVVEVAAGGPERTR
GDEVTAPAKARKVPPSRIRGGVRLPSPSRDGGRSLGGHLNWLNNNNTSTT
NSTTSANTRSSSAGSAA back to topmRNA from alignment at H-paniculata_contig3079:13397..18120- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3079.8340.1 ID=mRNA_H-paniculata_contig3079.8340.1|Name=mRNA_H-paniculata_contig3079.8340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4724bp|location=Sequence derived from alignment at H-paniculata_contig3079:13397..18120- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCCAAGATCGAGGCGGAGCAGCAGCGGCGTGAGCAAATGTTGGAACA
AGCGAAGGTCACACGCGCTAAGTACGACGCCCAACGAGCGGCGGAGTTGG
ATAATCTCGACAGATGGGAGAACGCGCTCAGGTACCTACCGCGGTACAAT
AGGTTACTACTGTCGTCTGATCCCATGTTACGACTGACAAGTAAATATAT
ACACGGAAGAACTCTCACCGAACAAGCTTCAGTCTCGTGACATGATATAG
TAGCGACAGGTCTTCTCCCGAGAATGCGTGGTCAATGGTCTGACAATTAT
GTATTCAAAATATGAGCACGCCTCCCTCTCTCGTCGCACGACCGTCGGGG
TGTAGCGTTCTGTAGCTATGTGGTAATAATATTGAACATATCAAACAGTT
CTTGAAAATTGCGGGCGACGACTTACTCTTCTCGAGCACAACTTATGTAC
GTACTCGAGTATGTACTTCTTATATATGTACATATATATATATATATATA
TATATATTGTATTTTCCGACACAAAACCGTTGTTGTTACCTTCTTCCTTT
TGCATTGCTGTTTTCACTGTTCCTTTCGGCCTGCACTATTTACATTGAAA
GCCACGCTGGAGATTGCGAGTATATCGCTTCGATCCTGTCCAGCCTGCGC
CGAGAGCTGCGCTCGCATCTGCAATCTGCTGCGGGCGCGGCGTTCGCGGC
AACGCTCGAAGGAAAGTTCTCAGGAACGTTCCGTAGACTCGCGTCTTCGT
CTGAGACCACCGCTGCCGGCGGGGGGGGCGGAGATGCGCTTAGTGCTTAC
GTCAATGCCTTGGGGGTAAGATGTGAAATTACTATGTATATATCATATGA
CTCATTGCGCAAAGTTATTATTTACTTCACAAGACCGGACAAAAAAGAGA
GCCAAGGATGTCGCCTGTTTGATATGGATTTTCGAAGGAATTTCTTCATG
ATGTACCGTTTCTAGGATAGGAGATCGACGATTGTGATTTAAATAGTTTG
CGCTTGCCCTTTCCTTGGCAACAGCCCAGCCGGGTCCAACACTGTTTGCA
CATTCTCGGAAGGCGTAATAATGATACAATCAATATTTCTATATACATAT
TATTATACATATTGAAAAATGGGAGTAATGGCTGCTTCGGAACGTTTTGT
TTTACCCCGTACGGGGGTAAAATATCAAATTGGAATCTTGAAGGGCATTG
TGCCCAGTTTACATCCCCTTGTGGTGGGTCGTTTCGCGTGGATCAAAGAC
AAGACAAGGCGAACATCGCGACGCTGGCGTAATTGTAGCTTCACAACCAC
TGACTGCGGTACTGTGCTGTTAGGCGTTGCTCTTGATTTTCTCTCTAATA
CATGTTACGCGAACGTACCGGCTGAGAAAAAAAATCAATGTAAACAATGA
ACAAGAGTCTCGATAAATCCTGGTCATTCTCCAAACGTATTCCACTTTTT
TTTTTTAGTATCGTATGAGGAAGCAACACGCGGATAAATACACATGCTAT
ATAGCTATAAATTATATATCCCTTCTTACAGTGGTGTAGTGCAAATTTTG
GGCTTCCACCCGACGTAACCGAAAGACGTTTTTTATGTGCTTCTTGTTTC
TTTATTTACTCGACGTGGATACATACTTTCTCTACACGCGAACAGGCCTA
CTTGGAGACGGAGGAGGCGTGTGTAAGGCGGCTCCGCGAGCGTGCGTCCT
CTGACGAGAGTAAGCTGTCTGCCGTCGCTGACGAGATGAACCAGTACGAG
GGACTCGGCATGCCTTCGCTGGTGAGCGGTCTAATTACACCGTGACGCTT
TTTAAGAGCTTCTGAGCTCGCTTGCCGCGCGATCTTTCTGGTGGTTGAAA
CAAGCGTGTGAATGGTGTTTCGGGGGTTAGCGATGCGTATACATTTTCAA
ATCTTCGGCTGTATACAGCAACATAAGGTCCTTTTATTACCTATATGGTG
GTTGTTTATTTTTTTATCTACAAATGCATGGACTCAAGCGACGAGAAGCT
GAAAAGGGAAACGTCGTTTGCTTTGTCCTTGCTGCTCGCTGCCCTGGAGA
TTTTTTGTTCGCCCGATGTTTTTGTTTTCAAGCACGATCGTGGGAGGCAC
ATATGTGTTGAGAAAAATTACCTTACTTATTGCGCATATATATATACATT
ATGTACTAGCAATTGACACTCGAGTGATGGATTATTATCAGGGGCTGCCA
ACATTTCTGCCCCCCGCCCCCCCCCAAACCCGTAAAAACAATGTGGTACT
AAAAACAAACATATGACATGACCCAAGTGGTGATACTTCTTTCTTTTCAA
TCCAAAAAATCTCAGGCAAGGTAACCGGTTTCTGTGCCAAGGCAACGAAA
AGAGCGTGGACACGCAAAAAACCATCAAAACCAAGCTTCTCATATCTCCG
AGGATGAGATGTACCGAGGACAGACCAAAGTAAACGATAGAGACATAAAA
CATGAGTACATAGGCCTCGTGGCCGCCAATCGGTTCATAGCTCAAACGTT
TTTTCGTGGCTCCAGCCCCCGTCCCCTCACCCGCTCTCCTACGCTACCCA
TTTCCACACACCTTCATCTCATTTCTTCTCCCGTCTAATAAAACAGGCCG
TCGGTCTGCGTGCCGAAATGGAGAAAATATCCGTCAACATCAGAGAAGAC
CGAATGGCGGAGCACACCATGGTCGAGCAAGCCCGGTGCGAGGCCATCAA
ACTCGCCGAGTCTCTCTCCTTCAACGCCGCCGCCGCCAGCAGCAGTCGCG
CCTCCAAGGGTTTCCGCTACGAAGCACCCCCGGTTGGCAGAACTAGCCCC
TTCGCTAGCGGCGGCGGGAGCGGTGCCGGCAGCGACAGACTCCGCGGCGC
AGGTGGTGGTTCTGAAAACGCGGTCAATGATGGGTCTGGAGGTGGAGGCG
TTAACGGCGACGTATCTGGACCGAACGGTGGCGCCGGCGTAATGGAGCTC
GGTATGGTTGAGGACAGGAAACTCCGTCGGGTGTGGGAGCTGTTTTCGTT
CCTCGGGATAGGGAACAAGGGTGAAGACATCCCGATCGTCGTGAATGTAG
GGGCTAGTTACGGGAGCAACGGCGATGGGGGTGGTGGTGGTGGCGGCAGG
GGGGTATTTGTTTCGGAATTTTCTGTCGCCACCACCGCCACCACCGCGGC
CGTCGCCGCCGCCACCAGCGCCGCCGCTCCCAGCGCCGCCGCCCCCACCA
CGGCCGCTCCAGCCGCCGCCACCGCCTCTGACAACGCGACGATGGCTGCA
CGGGAATCCGATCCCTATTCGGCACCCGCGGGCTCGGTGGTTGAAGTGGC
TGCTGGGGGCCCGGAGCGAACGCGCGGGGACGAAGTTACTGCGCCTGCAA
AAGGTGTCCCAGACCAGGTACCAGCAACAAACCTCAAAACAGAAACAACC
GCCATTTTAATTGTTGTTGTTATTGATGCTGCCCGTTGGCCCATCTGCCA
GCCATATCCACATTACCATACCCTTGTGCTTGTTTCGAAAGTGGTGTTGT
ACTCTCGCACTTGCAGTAGCAGTAGTTAGTACTAGTAATGAACGGTGGTT
AATAGTATTAGGGCGAAAACTTGGTGTGCGCTAGGTTCCCCGAGGTTCTC
AAGCACCCGACGCGACCCTCTATTTGTGGACGAACGAAAGCTCTTTGCGA
GTAACTCTTGGGTCAGTTTTTCCGAGAACTTTATGTACTCTATAAACCGC
CCAACGCCCCGTTTTGATGCTTACAAGCTCTGACGAGTAGACTCCCCAAT
TTAACCTACAGGTAGAAACTACACAAATAAACAGACCAATGAATGTTAAC
GACCCATAGCTCCATCCCCTCGAGGACTCTTGGTCAATGGCCGAACAAGT
ACCCATTAAGAACACGAGTACGTCCCCCCACCCCCTTCCCCCTCCCGCCC
CGTCTTTTGTGCGTGAATATGAACGACCTCTCCCTCCGCGCTCATGTGCA
GCGTTCGTTTGCGCAAGCCGTAGCGCCGTCCCGATTTTCTCTGTTCTGTG
GACAGTCCCCGGAATCCGTAGCATCTCCCGGCGCGGCTACCACACCCCAA
GAGGCTAGCGCACCCCGCGGCGGAGGCAATGGCACCGTCAACGGCAGCAG
GTGATACGCATGGTTTTGTCGAGATTTATCTTGTGGCTACTGAATATGGT
GTAGAGAGAAAAGTGTACCGTTTTAGAGTGGGAACGAGACCCCATCTTCT
AGTTTCAGGGGATATCAGGGGAGAGTAAATATTGAGTCTATCGTTTGTTG
CTCTCGGGGGTTGAGACTACACGGAATCCAAGTCCTTGGCAAAAGATTCT
TCGGACAAGTGACGCTGGTTGTTCGTGTACGATCGCTCTTAGTTTTCCCC
GGAGTGCCGTGTTTCTTGTTTGTTCTTCCCGAACCCGAAAGAAGCGCCGC
CCCCAAAGTAACGACTGAGTCCGTTTCACCTACTCGACTGTCAGCAATTA
AAACGTCGTCCGGTATACAATGCTTACGATAGCTCCGGTGTAATATTACC
CCCCTTTTCCCTCCCCCCGTTTACGCCCGCGAAATGAAACCTTACGTAGA
GCGCGCAAGGTGCCCCCGTCGAGGATCCGTGGCGGTGTGCGCCTACCCTC
ACCATCTCGCGATGGCGGTCGCTCACTCGGGGGACACCTTAATTGGCTCA
ACAACAACAACACCTCCACCACGAATTCCACCACCAGCGCAAACACCCGT
AGTAGCTCTGCTGGATCAGCCGCT back to topCoding sequence (CDS) from alignment at H-paniculata_contig3079:13397..18120- >mRNA_H-paniculata_contig3079.8340.1 ID=mRNA_H-paniculata_contig3079.8340.1|Name=mRNA_H-paniculata_contig3079.8340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2802bp|location=Sequence derived from alignment at H-paniculata_contig3079:13397..18120- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCCAAGATCGAGGCGGAGCAGCAGCGGCGTGAGCAAATGTTGGAACA
AGCGAAGGTCACACGCGCTAAGTACGACGCCCAACGAGCGGCGGAGTTGG
ATAATCTCGACAGATGGGAGAACGCGCTCAGGATTCCAAGATCGAGGCGG
AGCAGCAGCGGCGTGAGCAAATGTTGGAACAAGCGAAGGTCACACGCGCT
AAGTACGACGCCCAACGAGCGGCGGAGTTGGATAATCTCGACAGATGGGA
GAACGCGCTCAGCCACGCTGGAGATTGCGAGTATATCGCTTCGATCCTGT
CCAGCCTGCGCCGAGAGCTGCGCTCGCATCTGCAATCTGCTGCGGGCGCG
GCGTTCGCGGCAACGCTCGAAGGAAAGTTCTCAGGAACGTTCCGTAGACT
CGCGTCTTCGTCTGAGACCACCGCTGCCGGCGGGGGGGGCGGAGATGCGC
TTAGTGCTTACGTCAATGCCTTGGGGCCACGCTGGAGATTGCGAGTATAT
CGCTTCGATCCTGTCCAGCCTGCGCCGAGAGCTGCGCTCGCATCTGCAAT
CTGCTGCGGGCGCGGCGTTCGCGGCAACGCTCGAAGGAAAGTTCTCAGGA
ACGTTCCGTAGACTCGCGTCTTCGTCTGAGACCACCGCTGCCGGCGGGGG
GGGCGGAGATGCGCTTAGTGCTTACGTCAATGCCTTGGGGGCCTACTTGG
AGACGGAGGAGGCGTGTGTAAGGCGGCTCCGCGAGCGTGCGTCCTCTGAC
GAGAGTAAGCTGTCTGCCGTCGCTGACGAGATGAACCAGTACGAGGGACT
CGGCATGCCTTCGCTGGCCTACTTGGAGACGGAGGAGGCGTGTGTAAGGC
GGCTCCGCGAGCGTGCGTCCTCTGACGAGAGTAAGCTGTCTGCCGTCGCT
GACGAGATGAACCAGTACGAGGGACTCGGCATGCCTTCGCTGGCCGTCGG
TCTGCGTGCCGAAATGGAGAAAATATCCGTCAACATCAGAGAAGACCGAA
TGGCGGAGCACACCATGGTCGAGCAAGCCCGGTGCGAGGCCATCAAACTC
GCCGAGTCTCTCTCCTTCAACGCCGCCGCCGCCAGCAGCAGTCGCGCCTC
CAAGGGTTTCCGCTACGAAGCACCCCCGGTTGGCAGAACTAGCCCCTTCG
CTAGCGGCGGCGGGAGCGGTGCCGGCAGCGACAGACTCCGCGGCGCAGGT
GGTGGTTCTGAAAACGCGGTCAATGATGGGTCTGGAGGTGGAGGCGTTAA
CGGCGACGTATCTGGACCGAACGGTGGCGCCGGCGTAATGGAGCTCGGTA
TGGTTGAGGACAGGAAACTCCGTCGGGTGTGGGAGCTGTTTTCGTTCCTC
GGGATAGGGAACAAGGGTGAAGACATCCCGATCGTCGTGAATGTAGGGGC
TAGTTACGGGAGCAACGGCGATGGGGGTGGTGGTGGTGGCGGCAGGGGGG
TATTTGTTTCGGAATTTTCTGTCGCCACCACCGCCACCACCGCGGCCGTC
GCCGCCGCCACCAGCGCCGCCGCTCCCAGCGCCGCCGCCCCCACCACGGC
CGCTCCAGCCGCCGCCACCGCCTCTGACAACGCGACGATGGCTGCACGGG
AATCCGATCCCTATTCGGCACCCGCGGGCTCGGTGGTTGAAGTGGCTGCT
GGGGGCCCGGAGCGAACGCGCGGGGACGAAGTTACTGCGCCTGCAAAAGG
CCGTCGGTCTGCGTGCCGAAATGGAGAAAATATCCGTCAACATCAGAGAA
GACCGAATGGCGGAGCACACCATGGTCGAGCAAGCCCGGTGCGAGGCCAT
CAAACTCGCCGAGTCTCTCTCCTTCAACGCCGCCGCCGCCAGCAGCAGTC
GCGCCTCCAAGGGTTTCCGCTACGAAGCACCCCCGGTTGGCAGAACTAGC
CCCTTCGCTAGCGGCGGCGGGAGCGGTGCCGGCAGCGACAGACTCCGCGG
CGCAGGTGGTGGTTCTGAAAACGCGGTCAATGATGGGTCTGGAGGTGGAG
GCGTTAACGGCGACGTATCTGGACCGAACGGTGGCGCCGGCGTAATGGAG
CTCGGTATGGTTGAGGACAGGAAACTCCGTCGGGTGTGGGAGCTGTTTTC
GTTCCTCGGGATAGGGAACAAGGGTGAAGACATCCCGATCGTCGTGAATG
TAGGGGCTAGTTACGGGAGCAACGGCGATGGGGGTGGTGGTGGTGGCGGC
AGGGGGGTATTTGTTTCGGAATTTTCTGTCGCCACCACCGCCACCACCGC
GGCCGTCGCCGCCGCCACCAGCGCCGCCGCTCCCAGCGCCGCCGCCCCCA
CCACGGCCGCTCCAGCCGCCGCCACCGCCTCTGACAACGCGACGATGGCT
GCACGGGAATCCGATCCCTATTCGGCACCCGCGGGCTCGGTGGTTGAAGT
GGCTGCTGGGGGCCCGGAGCGAACGCGCGGGGACGAAGTTACTGCGCCTG
CAAAAGCGCGCAAGGTGCCCCCGTCGAGGATCCGTGGCGGTGTGCGCCTA
CCCTCACCATCTCGCGATGGCGGTCGCTCACTCGGGGGACACCTTAATTG
GCTCAACAACAACAACACCTCCACCACGAATTCCACCACCAGCGCAAACA
CCCGTAGTAGCTCTGCTGGATCAGCCGCTCGCGCAAGGTGCCCCCGTCGA
GGATCCGTGGCGGTGTGCGCCTACCCTCACCATCTCGCGATGGCGGTCGC
TCACTCGGGGGACACCTTAATTGGCTCAACAACAACAACACCTCCACCAC
GAATTCCACCACCAGCGCAAACACCCGTAGTAGCTCTGCTGGATCAGCCG
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