mRNA_H-paniculata_contig30786.8338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30786.8338.1
Unique NamemRNA_H-paniculata_contig30786.8338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.030e-19
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DDR+QRP+RKL+RE NG+RVL+GLLRYRRQ   AD VRLRAALCLLGLAHD  IAQ+
Sbjct: 1117 DDRLQRPMRKLIRESNGLRVLVGLLRYRRQVVAADAVRLRAALCLLGLAHDVHIAQM 1173
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.790e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DDR+QRP+RKL+RE NG+RVL+GLLRYRRQ   AD VRLRAA+CLLGLAHD  IAQ+
Sbjct: 1155 DDRLQRPMRKLIRESNGLRVLVGLLRYRRQVVAADAVRLRAAMCLLGLAHDVHIAQM 1211
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BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: A0A5D6YBX6_9STRA (LisH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBX6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.750e-11
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL A   LLGL+ D QIAQ+
Sbjct:  783 DDKMLRPVRKLARERNAIKVCVQLLRYKRSVQNADAIRLLATRALLGLSRDKQIAQI 839
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: M4BJU9_HYAAE (LisH domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJU9_HYAAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.230e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL A   LLGL+ D  I+Q+
Sbjct:  272 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADVIRLLATRALLGLSRDRHISQI 328
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: A0A8J5IYG7_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IYG7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.230e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL A   LLGL+ D  I+Q+
Sbjct:  636 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQI 692
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: A0A225WHN8_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHN8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.240e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL A   LLGL+ D  I+Q+
Sbjct:  780 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADVIRLLATRALLGLSRDRHISQI 836
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: G5A448_PHYSP (LisH domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A448_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 6.240e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL A   LLGL+ D  I+Q+
Sbjct:  790 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQI 846
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: A0A484EBA6_BRELC (LisH domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBA6_BRELC)

HSP 1 Score: 62.4 bits (150), Expect = 6.240e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL A   LLGL+ D  I+Q+
Sbjct:  785 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQI 841
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: A0A0P1AL32_PLAHL (HIV-1 Vpr-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AL32_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 8.520e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL A   LLGL+ D  I+Q+
Sbjct:  781 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRSLLGLSRDRHISQI 837
[Close]
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Match: A0A425C4X6_9STRA (LisH domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C4X6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.580e-9
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DDRMQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQIAQV 171
            DD+M RPVRKL RERN I+V + LLRY+R    AD +RL +   LLGL+ D  I+Q+
Sbjct:  492 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLSTRALLGLSRDRHISQI 548
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30786.8338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FHI0_ECTSI2.030e-1977.19LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDL7_9PHAE3.790e-1975.44LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5D6YBX6_9STRA3.750e-1159.65LisH domain-containing protein n=1 Tax=Pythium bra... [more]
M4BJU9_HYAAE6.230e-1056.14LisH domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A8J5IYG7_9STRA6.230e-1056.14LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A225WHN8_9STRA6.240e-1056.14LisH domain-containing protein n=1 Tax=Phytophthor... [more]
G5A448_PHYSP6.240e-1056.14LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A484EBA6_BRELC6.240e-1056.14LisH domain-containing protein n=1 Tax=Bremia lact... [more]
A0A0P1AL32_PLAHL8.520e-1056.14HIV-1 Vpr-binding protein n=1 Tax=Plasmopara halst... [more]
A0A425C4X6_9STRA1.580e-954.39LisH domain-containing protein n=1 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30786contigH-paniculata_contig30786:2358..2528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue5.4e-14
Seed eggNOG ortholog2880.D7FHI0
Preferred nameVPRBP
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone kinase activity (H2A-T120 specific)
EggNOG OGsKOG1832@1,KOG1832@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-25_002300.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko04121
Exons1
Model size171
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.535221-CDS-H-paniculata_contig30786:2357..25191622929946.535221-CDS-H-paniculata_contig30786:2357..2519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30786 2358..2519 -
1691481081.2634668-CDS-H-paniculata_contig30786:2357..25191691481081.2634668-CDS-H-paniculata_contig30786:2357..2519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30786 2358..2519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.5493248-UTR-H-paniculata_contig30786:2519..25281622929946.5493248-UTR-H-paniculata_contig30786:2519..2528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30786 2520..2528 -
1691481081.2733765-UTR-H-paniculata_contig30786:2519..25281691481081.2733765-UTR-H-paniculata_contig30786:2519..2528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30786 2520..2528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30786.8338.1prot_H-paniculata_contig30786.8338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30786 2358..2519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30786.8338.1

>prot_H-paniculata_contig30786.8338.1 ID=prot_H-paniculata_contig30786.8338.1|Name=mRNA_H-paniculata_contig30786.8338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MQRPVRKLVRERNGIRVLLGLLRYRRQAAMADTVRLRAALCLLGLAHDGQ
IAQV
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mRNA from alignment at H-paniculata_contig30786:2358..2528-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30786.8338.1 ID=mRNA_H-paniculata_contig30786.8338.1|Name=mRNA_H-paniculata_contig30786.8338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig30786:2358..2528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACCGGATGCAGCGTCCCGTGCGTAAGCTAGTCCGAGAGCGCAACGG
GATCCGTGTGCTGCTGGGATTGCTAAGGTACCGGAGGCAGGCGGCCATGG
CAGACACAGTCAGGCTGAGAGCGGCGCTGTGTTTGCTGGGGCTGGCGCAC
GACGGTCAGATCGCGCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig30786:2358..2528-

>mRNA_H-paniculata_contig30786.8338.1 ID=mRNA_H-paniculata_contig30786.8338.1|Name=mRNA_H-paniculata_contig30786.8338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig30786:2358..2528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGTCCCGTGCGTAAGCTAGTCCGAGAGCGCAACGGGATCCGTGT
GCTGCTGGGATTGCTAAGGTACCGGAGGCAGGCGGCCATGGCAGACACAG
TCAGGCTGAGAGCGGCGCTGTGTTTGCTGGGGCTGGCGCACGACGGTCAG
ATCGCGCAGGTAATGCAGCGTCCCGTGCGTAAGCTAGTCCGAGAGCGCAA
CGGGATCCGTGTGCTGCTGGGATTGCTAAGGTACCGGAGGCAGGCGGCCA
TGGCAGACACAGTCAGGCTGAGAGCGGCGCTGTGTTTGCTGGGGCTGGCG
CACGACGGTCAGATCGCGCAGGTA
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