mRNA_H-paniculata_contig30711.8326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: D8LC08_ECTSI (Bardet-Biedl syndrome protein 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC08_ECTSI) HSP 1 Score: 171 bits (434), Expect = 2.750e-47 Identity = 88/126 (69.84%), Postives = 103/126 (81.75%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCITDTFQVTPVSA 378
VIHFSMKPLSLH R+H RPMN+LVLRG+FTMQV+HDWLAMCLP+VPPR+S ++ TL FENVFT G+LTA+YRRG AV+ SDSASTLAIVKE++SKEAT+RRV ITDTFQV + A
Sbjct: 501 VIHFSMKPLSLHHRVHAM--PRNLQARPMNALVLRGNFTMQVIHDWLAMCLPDVPPRISAEAEDATLNFENVFTGGILTASYRRGAAVVSSDSASTLAIVKELISKEATSRRVHITDTFQVEVMGA 624
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: A0A7S1C5K1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5K1_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.510e-26 Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCITDTFQV 363
++ +KPLSLH RLH + +G RPMN L L G+FT+ MH+W+A CLP+VP RV E DE + F NVF L+A+Y++GEAV SDS ST+AI+KEV++K ATAR+V + +F++
Sbjct: 491 IVRLQIKPLSLHHRLHGDI--DG---RPMNRLRLAGAFTLGQMHEWVANCLPDVPSRVME--DEVRMVFRNVFLGTQLSASYKKGEAVFLSDSISTIAILKEVITKAATARKVRVELSFEI 604
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: A0A835YQP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQP2_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.310e-23 Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLHDQLGTEGFTRRP--------MNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCITDTFQ 360
V+ F ++PLSLH R+H + G E P MN L L G FT+ V+HDW+A CLP VPP +D L+F N FT +LT YR+GEAV RSDSAS LAI++E A RR+ ++ +Q
Sbjct: 660 VVKFKIRPLSLHHRVHAERGQEEKWPEPGEEAPGPPMNELRLTGGFTLGVVHDWVAQCLPGVPPEAQ--SDTMNLKFRNAFTGSVLTCRYRKGEAVARSDSASALAILREAFETGAIQRRIHLSHNYQ 785
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: H2ZZ55_LATCH (Bardet-Biedl syndrome 7 protein homolog n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZZ55_LATCH) HSP 1 Score: 102 bits (253), Expect = 1.960e-22 Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLH--DQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCITDTFQVTPVSARGAIGATCKRFSFILL 426
V + +KPLSLH+R H DQ RPMN+L LRG F+ +H W+ CLPEVP +V + T F+N F L TYR+GE + +SD+ ST++I+K+V+SKEAT R++ + ++ V S + + F LL
Sbjct: 483 VRQYQIKPLSLHQRSHIIDQ-------NRPMNTLTLRGQFSFAEVHSWVVFCLPEVPEKVP-AEESVTFYFQNTFLDTQLECTYRKGEGIFKSDNISTISILKDVLSKEATKRKINLNISYDVNEESVNHTLKLIHPKLEFQLL 618
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: A0A8K1CBX7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBX7_PYTOL) HSP 1 Score: 101 bits (252), Expect = 2.640e-22 Identity = 51/114 (44.74%), Postives = 77/114 (67.54%), Query Frame = 1
Query: 4 IHFSMKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCI 345
+ F +KPLSLH R+++ E + PMN+L L G FT+ +H+W+++CLPEVP R+ E D+ + ++N + LL YR+GEA S S S +AI+KEV++KEATAR+V +
Sbjct: 446 VRFYVKPLSLHHRINEV--DENELKGPMNALHLSGQFTLLQIHEWVSLCLPEVPSRLQE--DDVVMYYKNTYVGNLLVCRYRKGEASFSSPSVSVIAILKEVITKEATARKVTL 555
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: UPI001B887627 (Bardet-Biedl syndrome 7 protein homolog isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887627) HSP 1 Score: 101 bits (252), Expect = 2.670e-22 Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLH--DQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCITDTFQVTPVSARGAIGATCKRFSFILL 426
V + +KPLSLH+R H D +RP N+L L GSF++ MH+W+ CLPE+P R G D T FE+ F + L YR+GEA RSD+ ST++I+K+V+SKEAT +++ + T++V S +G R LL
Sbjct: 480 VKQYLIKPLSLHQRTHVFDD-------KRPYNTLKLTGSFSLAEMHNWVCFCLPELPERTPAG-DTATFHFESTFLNTQLECCYRKGEATFRSDNISTISILKDVLSKEATKKKIRLDITYEVNDDSVSHTLGLIHPRLESQLL 615
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: A0A8C9LCR3_PAVCR (Bardet-Biedl syndrome 7 n=2 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9LCR3_PAVCR) HSP 1 Score: 100 bits (250), Expect = 4.520e-22 Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCITDTFQVTPVSAR 381
V + +KPLSLH+R H + + RPMN+L+L+G F+ +H W+ CLPEVP R G D T F+N F L +TYR GE +SD+ ST++I+K+V+SKEAT R++ + +F + S R
Sbjct: 344 VYQYQIKPLSLHQRTHS-IDHD----RPMNTLMLKGQFSFAEIHSWVVFCLPEVPERTPPG-DSVTFYFQNTFLGTQLESTYRIGEGCFKSDNISTISILKDVLSKEATKRKINLNISFDINEESVR 464
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: A0A6G1RSE6_9GRUI (Bardet-Biedl syndrome 7 (Fragment) n=2 Tax=Gruiformes TaxID=9108 RepID=A0A6G1RSE6_9GRUI) HSP 1 Score: 98.2 bits (243), Expect = 4.550e-22 Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCITDTFQVTPVSAR 381
V + +KPLSLH+R H RPMN+L L+G F+ +H W+ CLPEVP + G + T F+N F L TYR+GE +SD+ ST++I+K+V+SKEAT R++ + ++ V S R
Sbjct: 57 VHQYQIKPLSLHQRTHSVDHD-----RPMNTLTLKGQFSFAEIHSWVVFCLPEVPEKTPSG-ESITFYFQNTFLDTQLECTYRKGEGCFKSDNISTISILKDVLSKEATKRKINLNISYDVNEESVR 177
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: UPI000C6DCF1C (Bardet-Biedl syndrome 7 protein homolog n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DCF1C) HSP 1 Score: 99.4 bits (246), Expect = 4.900e-22 Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = 1
Query: 1 VIHFSMKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCI 345
V + +KPLSLHRR H ++P+N+L LRG FT+ MH W+ CLPEVP R G D +L F + F +L+ +Y++GEA +SDS ST++I+K+V+SKEAT +++ +
Sbjct: 218 VRQYQIKPLSLHRRTHTF-----DDKKPLNTLTLRGMFTLGEMHAWIVFCLPEVPERTPAG-DYASLYFVSTFLDTVLSCSYKKGEATFKSDSISTISILKDVLSKEATRKKISL 326
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Match: A0A5D6XJS9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJS9_9STRA) HSP 1 Score: 100 bits (249), Expect = 6.790e-22 Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 4 IHFSMKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPPRVSEGTDETTLQFENVFTSGLLTATYRRGEAVLRSDSASTLAIVKEVVSKEATARRVCI 345
I F +KPLSLH R++ E ++P N+L G+FT+ +H+W+AMCLPEVP R+ + +E T+ ++N F LT YR+GEA S S S +AI+KEVV+KEAT R+V +
Sbjct: 491 IRFFVKPLSLHHRVNAV--DESELKKPTNTLQFSGAFTLVQIHEWVAMCLPEVPGRLQD--EEVTMCYKNTFLGNYLTCRYRKGEATFASPSVSVIAILKEVVTKEATTRKVTL 600 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30711.8326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30711.8326.1 >prot_H-paniculata_contig30711.8326.1 ID=prot_H-paniculata_contig30711.8326.1|Name=mRNA_H-paniculata_contig30711.8326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp MKPLSLHRRLHDQLGTEGFTRRPMNSLVLRGSFTMQVMHDWLAMCLPEVPback to top mRNA from alignment at H-paniculata_contig30711:290..1272+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30711.8326.1 ID=mRNA_H-paniculata_contig30711.8326.1|Name=mRNA_H-paniculata_contig30711.8326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=983bp|location=Sequence derived from alignment at H-paniculata_contig30711:290..1272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30711:290..1272+ >mRNA_H-paniculata_contig30711.8326.1 ID=mRNA_H-paniculata_contig30711.8326.1|Name=mRNA_H-paniculata_contig30711.8326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig30711:290..1272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |