mRNA_H-paniculata_contig3070.8322.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3070.8322.1 vs. uniprot
Match: D8LAT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT1_ECTSI) HSP 1 Score: 317 bits (812), Expect = 4.560e-93 Identity = 235/584 (40.24%), Postives = 299/584 (51.20%), Query Frame = 1
Query: 139 LVFAKGEGESGKPPAEPEPTLPSGFSAILNAEEEEIYPADAKIRVVLAEGSLGGRGRRQAAELHQSLQQVVATAAIYSHLIRKHGSSGISRRRSASDAGSGEARGVAVPVR------CGCGGADGPCKAISNLLRDELAKVTDVAEAERRGALLKKLRQAERRSGGLCNPAQLHR-------EASTSSLNAADPLPDLSGAVPVAPVAPV---LDSPRRGLSSWGGGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSSPVGVVSKRPADVPWADNMLTAVNRKRHGSMLKARGRDLAKRLSVIVPPAAGELQAVAARLPPWGEIDTEGEGASVSFQKGRWLCRGGVQQLSLHGNTKGNSHIHSNNSANRTTNPSGPVTSTQSPADQPPASXXXXXXXXXXXXXVSSSLPPAPSRAATVPLENDPKFTQPKAIFGTNEGARR--GSRLGPSLGSDGGELVVVD---------ARKQQQDWKLSAQELSMINKEEELVMPPEVLGKLLSAGAVIESHQQRDFWDIFSRLEIVTRTEALLNIALRGGKGCPARAGRMGRELCMSLTSVVLDAIAAVK 1809
LVFA+ + + P +EPEPTLPSGFSA LNAEEE+IYPA+AKIRV++AEGSL GR RRQAAELHQ+LQQVV AAIY+HL+ KHG G + + +G A VA + CGCGG G CKAIS+LL+ E+ KV AE ER+G +LKK +Q ERRSGGLCNP L E S S +A P +P D+ R L+S G G S G VS DVPWA++ML RKRH ++LK RGR LAK L+ ++ + + VA+RLPPW E + + E ++G L R + +I S + S +S S AP+ AA++ P A GS P+ R ++QDWKLSAQELS+I KEEE VM P+VL LL+ GA + QQ DFWD+F+RLE+ TRTEALLNIA+RGG+GC AR+GRMGRELC++LTSVVL+A+ AV+
Sbjct: 47 LVFARAKEPA--PASEPEPTLPSGFSATLNAEEEKIYPAEAKIRVLVAEGSLLGRNRRQAAELHQALQQVVGAAAIYNHLLVKHGGLGTKPKECKTSNDTGAAAAVAGTEKNDNRMVCGCGGGSGSCKAISSLLKSEMDKVVAAAEKERKGEMLKKFKQVERRSGGLCNPDLLENIVRSTGGEGSGESSPSAXXXXXXXXXXXXPPRSPDHKGQDAAIRALNS-------------------------LVVVDVEKDERGGIAGVGGSG-GAVSSGAQDVPWAEDMLCRSVRKRHAAVLKTRGRALAKGLARMLKGVSNDXXXVASRLPPWEECEDDDEDKPTPQEEGAELDR-----------IRSRGNIFSAPTHEXXXXXXXXXXXXXXXXXXXXXSYVSAATSEDGNERLSLSSDTAPT-AASISSNGSAAIRSPVAAMAXXXXXXXSPGSDAVPAAXXXXXXXXXXXXXXXXAANCVRSRRQDWKLSAQELSLIKKEEERVMKPDVLTTLLAKGASLGCLQQADFWDVFARLEVATRTEALLNIAIRGGRGCAARSGRMGRELCINLTSVVLEALNAVE 590
BLAST of mRNA_H-paniculata_contig3070.8322.1 vs. uniprot
Match: A0A6H5KYX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX3_9PHAE) HSP 1 Score: 169 bits (427), Expect = 9.200e-41 Identity = 153/460 (33.26%), Postives = 201/460 (43.70%), Query Frame = 1
Query: 538 KVTDVAEAERRGALLKKLRQAERRSGGLCNPAQLHR-------EASTSSLNAADPLPDLSGAVPVAPVAPV---LDSPRRGLSSWGGGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSSPVGVVSKRPADVPWADNMLTAVNRKRHGSMLKARGRDLAKRLSVIVPPAAGELQAVAARLPPWGEIDTEGE----GASVSFQKGRWLCRGGVQQLSLHGNTKGNSHIHSNNSANRTTNPSGPVTSTQSPADQPPASXXXXXXXXXXXXXVSSSLPPAPSRAATVPLENDPKFTQPKAIFGTNEGARRGSRLGPSLGSDGGELVV------------VDARKQQQDWKLSAQELSMINKEEELVMPPEVLGKLLSAGAVIESHQQRDFWDIFSRLEIVTRTEALLNIALRGGKGCPARAGRMGRELCMSLTSVVLDAIAAVKKKQDLMPTHA 1839
KV AE ER+G +LKK +Q ERRSGGLCNP L E S S +A P +P D+ R L+S G G S GV S DVPWA++ML RKRH ++LK RGR LAK L+ ++ + +L+ VA+RLPPW E + + E G ++ R L G + H V++ S +S S AP+ A+ V++R+Q DWKLSAQELS+I KEEE VM P+VL LL+ GA + QQ DFWD+F+RLE+ TRTEALLNIA+RGG+GC AR+GRMGRELC++LTSVVL+A+ AV++ Q H+
Sbjct: 3 KVVAAAEKERKGEMLKKFKQVERRSGGLCNPDLLENIVRSTGGEGSGESSPSAXXXXXXXXXXXXPPRSPDHKGQDAAIRALNS-------------------------LVVVDVEKDERGGVAGVGGSGGGV-SSGAQDVPWAEDMLCRSVRKRHAAVLKTRGRALAKGLARMLKGVSNDLKGVASRLPPWEECEDDDEDKPXGGGAELERIRSL--GNIFSAPTHEXXXXXXXXXXXXXXXXXXXXXSCVSAVTS---------------EDGNERLSLSSDNAPTAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADCVNSRRQ--DWKLSAQELSLIKKEEERVMKPDVLTTLLAKGASLGCLQQADFWDVFARLEVATRTEALLNIAIRGGRGCAARSGRMGRELCINLTSVVLEALNAVEQAQRKAQLHS 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3070.8322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3070.8322.1 >prot_H-paniculata_contig3070.8322.1 ID=prot_H-paniculata_contig3070.8322.1|Name=mRNA_H-paniculata_contig3070.8322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=631bp MVAVDDDDDFIVQPPGEGDGAEAADGSNRGQQQQGASRYFLQGFRRLVFAback to top mRNA from alignment at H-paniculata_contig3070:7414..18386+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3070.8322.1 ID=mRNA_H-paniculata_contig3070.8322.1|Name=mRNA_H-paniculata_contig3070.8322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10973bp|location=Sequence derived from alignment at H-paniculata_contig3070:7414..18386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3070:7414..18386+ >mRNA_H-paniculata_contig3070.8322.1 ID=mRNA_H-paniculata_contig3070.8322.1|Name=mRNA_H-paniculata_contig3070.8322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig3070:7414..18386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |