mRNA_H-paniculata_contig307.8317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig307.8317.1
Unique NamemRNA_H-paniculata_contig307.8317.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig307.8317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig307contigH-paniculata_contig307:14084..14475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size394
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.9833562-UTR-H-paniculata_contig307:14083..141061622929943.9833562-UTR-H-paniculata_contig307:14083..14106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig307 14084..14106 +
1691481080.3091755-UTR-H-paniculata_contig307:14083..141061691481080.3091755-UTR-H-paniculata_contig307:14083..14106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig307 14084..14106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.9998865-CDS-H-paniculata_contig307:14106..144751622929943.9998865-CDS-H-paniculata_contig307:14106..14475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 14107..14475 +
1691481080.3206642-CDS-H-paniculata_contig307:14106..144751691481080.3206642-CDS-H-paniculata_contig307:14106..14475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 14107..14475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig307.8317.1prot_H-paniculata_contig307.8317.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig307 14107..14475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig307.8317.1

>prot_H-paniculata_contig307.8317.1 ID=prot_H-paniculata_contig307.8317.1|Name=mRNA_H-paniculata_contig307.8317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MVALYPRLSNVSCPPSDTTNMLTPLASSTALCVVKLVAADITALAMPFLF
PLITISCPSPTLITSAQDTSLERKNWQTPWTSLAPSTAVFRSLHMAIDDP
HGIFVDEEEDVLPPTPVLEPEPE
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mRNA from alignment at H-paniculata_contig307:14084..14475+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig307.8317.1 ID=mRNA_H-paniculata_contig307.8317.1|Name=mRNA_H-paniculata_contig307.8317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=392bp|location=Sequence derived from alignment at H-paniculata_contig307:14084..14475+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGCACTCCGCGAACGGGAGTAATGGTGGCCTTGTATCCTAGGCTATCC
AACGTAAGCTGTCCACCTTCGGACACGACGAACATGCTAACGCCCTTGGC
GTCCTCGACCGCACTCTGTGTAGTGAAGTTGGTAGCGGCAGATATCACAG
CATTGGCGATGCCGTTCCTCTTCCCGCTGATCACAATCTCCTGTCCTTCA
CCCACGTTGATAACCTCGGCGCAAGACACGTCCCTCGAGAGGAAGAATTG
GCAGACGCCCTGGACTTCCTTGGCGCCCTCCACAGCAGTCTTTAGATCTT
TACATATGGCAATCGACGATCCACACGGGATATTTGTCGACGAGGAAGAA
GATGTGCTACCTCCAACGCCGGTGCTTGAGCCAGAGCCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig307:14084..14475+

>mRNA_H-paniculata_contig307.8317.1 ID=mRNA_H-paniculata_contig307.8317.1|Name=mRNA_H-paniculata_contig307.8317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig307:14084..14475+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCCTTGTATCCTAGGCTATCCAACGTAAGCTGTCCACCTTCGGA
CACGACGAACATGCTAACGCCCTTGGCGTCCTCGACCGCACTCTGTGTAG
TGAAGTTGGTAGCGGCAGATATCACAGCATTGGCGATGCCGTTCCTCTTC
CCGCTGATCACAATCTCCTGTCCTTCACCCACGTTGATAACCTCGGCGCA
AGACACGTCCCTCGAGAGGAAGAATTGGCAGACGCCCTGGACTTCCTTGG
CGCCCTCCACAGCAGTCTTTAGATCTTTACATATGGCAATCGACGATCCA
CACGGGATATTTGTCGACGAGGAAGAAGATGTGCTACCTCCAACGCCGGT
GCTTGAGCCAGAGCCGGAGATGGTGGCCTTGTATCCTAGGCTATCCAACG
TAAGCTGTCCACCTTCGGACACGACGAACATGCTAACGCCCTTGGCGTCC
TCGACCGCACTCTGTGTAGTGAAGTTGGTAGCGGCAGATATCACAGCATT
GGCGATGCCGTTCCTCTTCCCGCTGATCACAATCTCCTGTCCTTCACCCA
CGTTGATAACCTCGGCGCAAGACACGTCCCTCGAGAGGAAGAATTGGCAG
ACGCCCTGGACTTCCTTGGCGCCCTCCACAGCAGTCTTTAGATCTTTACA
TATGGCAATCGACGATCCACACGGGATATTTGTCGACGAGGAAGAAGATG
TGCTACCTCCAACGCCGGTGCTTGAGCCAGAGCCGGAG
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