mRNA_H-paniculata_contig307.8318.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig307.8318.1
Unique NamemRNA_H-paniculata_contig307.8318.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig307.8318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig307contigH-paniculata_contig307:17600..19132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size691
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.9185648-CDS-H-paniculata_contig307:17601..178531622929943.9185648-CDS-H-paniculata_contig307:17601..17853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 17602..17853 -
1691481080.2898233-CDS-H-paniculata_contig307:17601..178531691481080.2898233-CDS-H-paniculata_contig307:17601..17853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 17602..17853 -
1622929943.9372687-CDS-H-paniculata_contig307:18697..191321622929943.9372687-CDS-H-paniculata_contig307:18697..19132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 18698..19132 -
1691481080.2991686-CDS-H-paniculata_contig307:18697..191321691481080.2991686-CDS-H-paniculata_contig307:18697..19132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 18698..19132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig307.8318.1prot_H-paniculata_contig307.8318.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig307 17602..19132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig307.8318.1

>prot_H-paniculata_contig307.8318.1 ID=prot_H-paniculata_contig307.8318.1|Name=mRNA_H-paniculata_contig307.8318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
AIVVASCAQLKNEVEAAAAGDTAEQLVLELGGADPIVCRDNIYIPPSQAV
RIEGAGRTGKTKVLLDAKAIYEGDGRDNVGNLFTTWGDLELHNLEFNFDP
EANSTTKMGAYGTRIVQNYGNAVVTDCSFVGSQSAADQKYVLGQAVKSDE
TENTTPSCSIKGLTYDNRSPSQSVIRASGGPMSVEDSSFVMGSDAVTSQN
FGTRAFVIYCGHKVELTVSRCRFSSGGNV
back to top

mRNA from alignment at H-paniculata_contig307:17600..19132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig307.8318.1 ID=mRNA_H-paniculata_contig307.8318.1|Name=mRNA_H-paniculata_contig307.8318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1533bp|location=Sequence derived from alignment at H-paniculata_contig307:17600..19132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATCGTAGTCGCAAGCTGCGCACAATTGAAAAATGAAGTAGAGGCGGC
GGCAGCTGGGGATACTGCTGAGCAGTTGGTGCTCGAGCTCGGAGGAGCCG
ACCCCATCGTCTGCCGCGACAATATCTACATACCACCTTCTCAGGCAGTT
CGTATCGAAGGCGCAGGCAGAACCGGTAAGACCAAGGTGCTCTTGGATGC
CAAAGCTATATATGAAGGAGACGGGAGGGACAATGTCGGGAATCTATTCA
CCACGTGGGGTGACCTCGAGCTACATAACTTGGAGTTCAACTTTGACCCT
GAGGCCAATTCAACAACTAAGATGGGTGCATACGGCACGCGGATTGTCCA
AAACTATGGTAATGCTGTTGTTACAGACTGCAGCTTCGTGGGCTCGCAGA
GCGCCGCCGACCAGAAGTATGTGCTAGGTCAAGCGGTGAGTATCTCGTTA
TTGGTTGGCGAGTAAGCTTATGGTCCGTCGTTTCCTTGTTGCATCAATTT
TTCTTCGAGCATATTTTGATTTGTCCTCTCTGATGAGATTGCACGTTCAA
CTTGGATTATTGGCAGCCAGGGTCCTGGGTTGGTCACGGATGTTATGTAG
CGGAATTGCCTTTAATTCTGTTGTCGCTTCCAACAATGAACAGTAGTGAC
AGGAATGGCCGTGAGTGCTCCGGGCGGGACGAGACACCATCGTTTCGACT
ATAGATCAACCTATAAATTTCCCAAAAAGTTTTCATGTGTGAGAACTGTA
TGGATTTGGTGGTGATCTGTGACTTGCTAGATGGTATTAAAAAATGTTGA
GTTTTCGATAAAAAGAAACTGACTTTAACAATTAATTCTGTCATGCAGGT
CATGCAAGCAGAACAGCCCGAACAGCCCGTGACTCGATTACCATTGACCT
CGCCATACATTCGACACACTGCAGCACCAACCAATCGCAACGCATTTAGC
ATGATTTAGATCCTATACCAGTAGAGTAGTCAGATATCCAAAGCTCCTGT
GGACCCCGACCCTGATTTAGAATTACCTGCTCACCACGGAACACACCTCG
TGCAATTAGTTCTGCGAGCAGTGAGGGGTACATTCTGCTGTTAATAGATG
CCCGCACACGTGCCCGGCATCACAAGGCCTGGTGCTGCACCGTTGTCGCC
TCGTTTTCGCGTGTTCTCCCTGTGTATAAACATGTGGTTTTACGGTTCTG
AGGATTTGTACATATATCTCGAACGTTCTGTCTCGGTTGTTCGTTTCGTT
CGCGTTGGTACCGACAATGGAGAGAGCAGGTCAAATCGGACGAGACCGAG
AATACCACCCCGTCGTGTTCCATCAAAGGCCTGACATACGACAACCGCAG
TCCGTCACAATCGGTGATTCGGGCTTCTGGTGGCCCCATGTCGGTCGAAG
ACTCTTCGTTCGTGATGGGCAGCGACGCCGTGACGAGCCAGAACTTCGGT
ACCCGTGCGTTCGTAATTTACTGCGGTCACAAGGTGGAACTCACGGTTTC
CAGGTGCCGCTTCTCGTCTGGCGGCAACGTAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig307:17600..19132-

>mRNA_H-paniculata_contig307.8318.1 ID=mRNA_H-paniculata_contig307.8318.1|Name=mRNA_H-paniculata_contig307.8318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig307:17600..19132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATCGTAGTCGCAAGCTGCGCACAATTGAAAAATGAAGTAGAGGCGGC
GGCAGCTGGGGATACTGCTGAGCAGTTGGTGCTCGAGCTCGGAGGAGCCG
ACCCCATCGTCTGCCGCGACAATATCTACATACCACCTTCTCAGGCAGTT
CGTATCGAAGGCGCAGGCAGAACCGGTAAGACCAAGGTGCTCTTGGATGC
CAAAGCTATATATGAAGGAGACGGGAGGGACAATGTCGGGAATCTATTCA
CCACGTGGGGTGACCTCGAGCTACATAACTTGGAGTTCAACTTTGACCCT
GAGGCCAATTCAACAACTAAGATGGGTGCATACGGCACGCGGATTGTCCA
AAACTATGGTAATGCTGTTGTTACAGACTGCAGCTTCGTGGGCTCGCAGA
GCGCCGCCGACCAGAAGTATGTGCTAGGTCAAGCGGCGATCGTAGTCGCA
AGCTGCGCACAATTGAAAAATGAAGTAGAGGCGGCGGCAGCTGGGGATAC
TGCTGAGCAGTTGGTGCTCGAGCTCGGAGGAGCCGACCCCATCGTCTGCC
GCGACAATATCTACATACCACCTTCTCAGGCAGTTCGTATCGAAGGCGCA
GGCAGAACCGGTAAGACCAAGGTGCTCTTGGATGCCAAAGCTATATATGA
AGGAGACGGGAGGGACAATGTCGGGAATCTATTCACCACGTGGGGTGACC
TCGAGCTACATAACTTGGAGTTCAACTTTGACCCTGAGGCCAATTCAACA
ACTAAGATGGGTGCATACGGCACGCGGATTGTCCAAAACTATGGTAATGC
TGTTGTTACAGACTGCAGCTTCGTGGGCTCGCAGAGCGCCGCCGACCAGA
AGTATGTGCTAGGTCAAGCGGTCAAATCGGACGAGACCGAGAATACCACC
CCGTCGTGTTCCATCAAAGGCCTGACATACGACAACCGCAGTCCGTCACA
ATCGGTGATTCGGGCTTCTGGTGGCCCCATGTCGGTCGAAGACTCTTCGT
TCGTGATGGGCAGCGACGCCGTGACGAGCCAGAACTTCGGTACCCGTGCG
TTCGTAATTTACTGCGGTCACAAGGTGGAACTCACGGTTTCCAGGTGCCG
CTTCTCGTCTGGCGGCAACGTAGTCAAATCGGACGAGACCGAGAATACCA
CCCCGTCGTGTTCCATCAAAGGCCTGACATACGACAACCGCAGTCCGTCA
CAATCGGTGATTCGGGCTTCTGGTGGCCCCATGTCGGTCGAAGACTCTTC
GTTCGTGATGGGCAGCGACGCCGTGACGAGCCAGAACTTCGGTACCCGTG
CGTTCGTAATTTACTGCGGTCACAAGGTGGAACTCACGGTTTCCAGGTGC
CGCTTCTCGTCTGGCGGCAACGTA
back to top