mRNA_H-paniculata_contig30694.8312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30694.8312.1
Unique NamemRNA_H-paniculata_contig30694.8312.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30694.8312.1 vs. uniprot
Match: D7FQ13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ13_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.020e-18
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 2 
Query:   77 EPVEWHPSTDFTVTSEGGSVFES--VDLSDEAEWTDYCEKSAAPVSIMEVEHKFE 235
            EP+EWHPSTDF VTSEGG+V+ S  VDLS+E +W+DYCEKSAAP+SIME+EHKFE
Sbjct:  108 EPIEWHPSTDFAVTSEGGTVYASDGVDLSEE-DWSDYCEKSAAPISIMEIEHKFE 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30694.8312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ13_ECTSI5.020e-1876.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30694contigH-paniculata_contig30694:797..2705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size995
Cds size156
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30694.8312.1prot_H-paniculata_contig30694.8312.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30694 1636..2705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.3757982-UTR-H-paniculata_contig30694:796..16351622929943.3757982-UTR-H-paniculata_contig30694:796..1635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30694 797..1635 -
1691481080.0592353-UTR-H-paniculata_contig30694:796..16351691481080.0592353-UTR-H-paniculata_contig30694:796..1635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30694 797..1635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.3880134-CDS-H-paniculata_contig30694:1635..17141622929943.3880134-CDS-H-paniculata_contig30694:1635..1714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30694 1636..1714 -
1691481080.0673153-CDS-H-paniculata_contig30694:1635..17141691481080.0673153-CDS-H-paniculata_contig30694:1635..1714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30694 1636..1714 -
1622929943.40384-CDS-H-paniculata_contig30694:2628..27051622929943.40384-CDS-H-paniculata_contig30694:2628..2705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30694 2629..2705 -
1691481080.074652-CDS-H-paniculata_contig30694:2628..27051691481080.074652-CDS-H-paniculata_contig30694:2628..2705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30694 2629..2705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30694.8312.1

>prot_H-paniculata_contig30694.8312.1 ID=prot_H-paniculata_contig30694.8312.1|Name=mRNA_H-paniculata_contig30694.8312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
EQVTTAGEIKGNQSGEFVPVLALDCRAGRMAPIDGLHGDERGRERVRIGR
S*
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mRNA from alignment at H-paniculata_contig30694:797..2705-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30694.8312.1 ID=mRNA_H-paniculata_contig30694.8312.1|Name=mRNA_H-paniculata_contig30694.8312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1909bp|location=Sequence derived from alignment at H-paniculata_contig30694:797..2705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGTGACGACGGCGGGTGAGATCAAGGGGAACCAGTCGGGTGAATT
CGTGCCCGTGCTGGCGTTAGACTGCAGGTGGGTGTGATTCAACAAACGTA
TCCCTTTGACGAGAACAAAATGACGCGGAATAGAATGACACCATTCAGCT
AACGTCAGATGAAGAAGAGAGTCAGGGTTGCCCTGTTAACCTCCCAAGTC
CCCCCCCCCCCCCCCCCGCCCTTCCACCCACCGACCGTCCGGACGACTGT
GGATACTTGGAATGAGGGAGACGATTTTTTGTTTTTAAAGGACTCGTCCG
AGTTTCGTCATGTGTGGGATGGTACATACATATAATTAAGCGTTCAACCC
CTGTCTTTCTTTTCGTTTTACGGTCATCTTTTAGAAATACCAATATGAGA
TCGGGAACAGGGCAAGGATGGGGCAGGTAGGCCCAGTAACACTAAGTGAA
GAAGCAATAGCCTGCTACAACTATCTGTAATTATGCGAAAGTGATGCGCG
GTCTAGGAAATGGGGCTTCTTTCTCGTCAAAGTGACAATTCGCTGCAGTC
ATAGGTAGGTATAGTCCAGGGCACGCACAATAATGATCATATGCTCAATC
ATATTTAACCTTCATTTTTTTTTTTTTTTCTTGTCTAAACTATTCATGGT
TTATTGGGAGTCCTCGCCAACCTTCTTCGTCATCATGGTCATCGTCATCG
TCATCGTCGTCGTCGTCGTCGTATCTCAGAGACGTATATGAATGGTACCG
ATATACCAGTGTCTATACGCACTATGTACAGGAAGGAATATTGTACAAAG
CACTGCAGACGTATCATCAGATGAACAAACTATTTTTCAATACACAAGGT
AAATTAATAGCAGAACGGTGCGCGCACATGGCTATTAATTAGCACACCCA
GCTTGCACGTTTGACAAAAAAAAAAAAAATGGTTTCTTTGTGACGAACTC
TTCTTTTTTCTTTCTTGACGCGCCTGGGTGCAGGGGGTTAGAGCCGGTAG
AATGGCACCCATCGACGGACTTCACGGTGACGAGCGAGGGAGGGAGCGTG
TTCGAATCGGTAGATCTTAGTGATGAAGCGGAGTGGACGGATTACTGCGA
AAAATCGGCGGCGCCTGTAAGCATAATGGAAGTAGAGCACAAATTCGAGC
CAATCTAAAAAGAAGAAAAATAAATAAATATATATATATATATAGAGAGA
GAGAGAGAGAGAGAGAGAGAGATGATCATGACTAAATGATTGTTTTCGGC
TAAGAGCTGAACCGTGCATGAGTAATGGTGATAAGAGCACAATGTTGAGC
TAGCCTTGAATTATAAAGCTGAAGTTAAAAAAAGATATCTCGTGGTGGTA
TATAGCTTGTTTTGGAGGAGGCTGGGATTGTAAAGGAGTGAGAGAGCTAA
ATTTAACTACTGATGGGTTTTCGCGGCGTGTGTTTGAGCCTGTCTTATGT
TTCGGGGAGGAGGAGGAATGACTAGTACGCGTACGCTGGATTTTGCGTGA
AGGCTTCGATTGTGTGTATTGTTTGTCGGTGACTATCTTGGCTGTCAGGG
GAATTGTAGAATGAGGCGTGCATGTGGTTTCTCTGGAGGCTGCTTGTTTT
TTCGATCTATTCCATGACAGGGAAGACGGAAGATGCATAGTAAATATCTG
GTAGCGTTTAATATATTCATAGTATATCTTAACACGGGGTGGTGGAAGAT
TGTAGGTACGAGTTATGTACTTGGTGATTTTGAGAGAAAGGGGACGCCTG
AATGGTAGACCGCTGACTTGAAGTAGTGGTGGGTTGTTACACCATCCGGC
CAGCATATGCAAGTATGGTATCGTTCGTCACAATATAAAATCGGTTTTAT
TCACTACACGTTCTTGTATTAATTTTGCATGCAAAAATATATATATATCT
TTGAAAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig30694:797..2705-

>mRNA_H-paniculata_contig30694.8312.1 ID=mRNA_H-paniculata_contig30694.8312.1|Name=mRNA_H-paniculata_contig30694.8312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig30694:797..2705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGTGACGACGGCGGGTGAGATCAAGGGGAACCAGTCGGGTGAATT
CGTGCCCGTGCTGGCGTTAGACTGCAGGAGCAGGTGACGACGGCGGGTGA
GATCAAGGGGAACCAGTCGGGTGAATTCGTGCCCGTGCTGGCGTTAGACT
GCAGAGCCGGTAGAATGGCACCCATCGACGGACTTCACGGTGACGAGCGA
GGGAGGGAGCGTGTTCGAATCGGTAGATCTTAGAGCCGGTAGAATGGCAC
CCATCGACGGACTTCACGGTGACGAGCGAGGGAGGGAGCGTGTTCGAATC
GGTAGATCTTAG
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